Wall clock time and date at job start Tue Mar 31 2020 12:11:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53005 * 109.46919 * 2 1
4 4 C 1.53000 * 109.46919 * 179.97438 * 3 2 1
5 5 C 1.53005 * 109.46919 * 180.02562 * 4 3 2
6 6 C 1.52994 * 109.47127 * 300.00132 * 3 2 1
7 7 C 1.53003 * 109.46964 * 300.00233 * 6 3 2
8 8 O 1.42904 * 109.47135 * 180.02562 * 7 6 3
9 9 C 1.53004 * 109.46869 * 60.00202 * 3 2 1
10 10 N 1.46500 * 109.47366 * 60.00036 * 9 3 2
11 11 C 1.34770 * 119.99919 * 179.97438 * 10 9 3
12 12 O 1.21589 * 120.00262 * 0.02562 * 11 10 9
13 13 C 1.47637 * 120.00188 * 179.97438 * 11 10 9
14 14 C 1.40015 * 119.89267 * 359.72515 * 13 11 10
15 15 C 1.36325 * 120.10545 * 179.75492 * 14 13 11
16 16 C 1.40884 * 119.89009 * 0.52210 * 15 14 13
17 17 C 1.41113 * 120.10062 * 179.71557 * 16 15 14
18 18 H 1.07993 * 119.99861 * 155.08486 * 17 16 15
19 19 C 1.40221 * 119.99884 * 335.07934 * 17 16 15
20 20 N 1.30649 * 120.00389 * 342.21212 * 19 17 16
21 21 Si 1.86799 * 119.99789 * 162.20689 * 19 17 16
22 22 H 1.48499 * 109.47266 * 94.66450 * 21 19 17
23 23 H 1.48501 * 109.47227 * 214.66323 * 21 19 17
24 24 H 1.48501 * 109.47273 * 334.66411 * 21 19 17
25 25 C 1.40886 * 119.79632 * 359.73454 * 16 15 14
26 26 C 1.36318 * 119.88999 * 0.02562 * 25 16 15
27 27 H 1.09001 * 109.46996 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47141 * 299.99851 * 1 2 3
29 29 H 1.08994 * 109.47227 * 59.99777 * 1 2 3
30 30 H 1.08997 * 109.47141 * 240.00149 * 2 1 3
31 31 H 1.09003 * 109.46812 * 119.99827 * 2 1 3
32 32 H 1.09004 * 109.47168 * 300.00236 * 4 3 2
33 33 H 1.08997 * 109.47141 * 60.00149 * 4 3 2
34 34 H 1.09002 * 109.46656 * 179.97438 * 5 4 3
35 35 H 1.08994 * 109.46696 * 299.99777 * 5 4 3
36 36 H 1.08997 * 109.47093 * 60.00119 * 5 4 3
37 37 H 1.08993 * 109.47170 * 59.99856 * 6 3 2
38 38 H 1.09001 * 109.47409 * 180.02562 * 6 3 2
39 39 H 1.09007 * 109.46978 * 299.99670 * 7 6 3
40 40 H 1.08997 * 109.47308 * 60.00217 * 7 6 3
41 41 H 0.96698 * 114.00339 * 179.97438 * 8 7 6
42 42 H 1.09001 * 109.46510 * 180.02562 * 9 3 2
43 43 H 1.08995 * 109.46806 * 299.99435 * 9 3 2
44 44 H 0.97006 * 119.99702 * 359.97438 * 10 9 3
45 45 H 1.08000 * 119.94560 * 0.02614 * 14 13 11
46 46 H 1.08004 * 120.04808 * 180.23504 * 15 14 13
47 47 H 0.97002 * 119.99779 * 180.02562 * 20 19 17
48 48 H 1.07996 * 120.05859 * 179.97438 * 25 16 15
49 49 H 1.08000 * 119.94508 * 179.97438 * 26 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 3.5700 1.4426 0.0006
5 6 4.0799 2.8851 0.0013
6 6 1.5299 2.1638 -1.2492
7 6 2.0399 1.4425 -2.4984
8 8 1.5640 2.1164 -3.6652
9 6 1.5299 2.1637 1.2493
10 7 2.0183 1.4732 2.4455
11 6 1.6931 1.9339 3.6695
12 8 0.9940 2.9224 3.7811
13 6 2.1848 1.2376 4.8750
14 6 2.9840 0.0955 4.7440
15 6 3.4445 -0.5479 5.8542
16 6 3.1058 -0.0682 7.1348
17 6 3.5751 -0.7342 8.2869
18 1 3.6775 -0.1961 9.2176
19 6 3.9084 -2.0947 8.2234
20 7 3.4731 -2.8284 7.2339
21 14 4.9749 -2.8582 9.5534
22 1 4.1083 -3.4756 10.5892
23 1 5.8463 -3.8995 8.9522
24 1 5.8181 -1.8063 10.1763
25 6 2.2969 1.0783 7.2616
26 6 1.8452 1.7178 6.1456
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8899
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 3.9329 0.9288 0.8909
33 1 3.9337 0.9286 -0.8891
34 1 5.1700 2.8851 0.0022
35 1 3.7170 3.3991 -0.8887
36 1 3.7162 3.3987 0.8913
37 1 0.4400 2.1637 -1.2492
38 1 1.8936 3.1913 -1.2495
39 1 3.1300 1.4425 -2.4985
40 1 1.6766 0.4149 -2.4984
41 1 1.8497 1.7132 -4.4964
42 1 1.8929 3.1915 1.2490
43 1 0.4400 2.1637 1.2492
44 1 2.5758 0.6843 2.3564
45 1 3.2397 -0.2738 3.7618
46 1 4.0641 -1.4266 5.7520
47 1 3.7034 -3.7697 7.1902
48 1 2.0343 1.4495 8.2412
49 1 1.2247 2.5965 6.2418
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000270394941.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:11:44
Heat of formation + Delta-G solvation = -97.239825 kcal
Electronic energy + Delta-G solvation = -27234.448711 eV
Core-core repulsion = 23546.000877 eV
Total energy + Delta-G solvation = -3688.447834 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-40.06711 -38.54952 -37.08755 -36.52549 -33.86621 -33.36251 -32.38601 -30.30161
-29.80873 -29.44328 -27.63815 -25.91490 -25.26392 -23.15568 -22.07082 -21.66100
-20.90403 -19.58892 -18.38629 -17.77967 -17.52041 -16.63209 -16.21855 -15.60649
-15.59326 -15.20520 -14.75213 -14.07174 -14.02424 -13.97335 -13.67469 -13.59882
-13.20226 -13.05083 -12.79027 -12.70307 -12.23325 -12.10246 -12.04761 -11.90914
-11.84905 -11.60035 -11.56486 -11.36148 -11.25960 -11.01273 -10.96480 -10.64432
-10.54472 -10.50486 -10.23857 -10.05918 -10.03164 -9.56437 -9.35081 -8.94365
-8.50667 -7.72056 -7.53601 -7.04024 -4.60260 2.24385 2.89927 2.93865
3.00228 3.03322 3.68453 3.73419 3.89171 4.13417 4.49096 4.55013
4.60091 4.66864 4.89957 5.09966 5.13581 5.19059 5.25859 5.38549
5.41320 5.48381 5.55759 5.58829 5.70465 5.78064 5.81209 5.86443
5.90134 5.99896 6.02908 6.03914 6.14570 6.15086 6.23778 6.24384
6.32230 6.44665 6.76577 6.82509 6.96716 7.07924 7.13483 7.34893
7.43520 7.65756 7.79330 7.85849 8.07144 8.27390 8.39640 8.63039
8.75206 9.11740 9.88130
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.020175 B = 0.002713 C = 0.002588
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1387.488905 B =10316.336222 C =10816.305326
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C -0.118 4.118
3 C -0.066 4.066
4 C -0.117 4.117
5 C -0.158 4.158
6 C -0.110 4.110
7 C 0.073 3.927
8 O -0.577 6.577
9 C 0.132 3.868
10 N -0.737 5.737
11 C 0.571 3.429
12 O -0.577 6.577
13 C -0.283 4.283
14 C -0.062 4.062
15 C -0.178 4.178
16 C 0.129 3.871
17 C -0.443 4.443
18 H 0.084 0.916
19 C 0.075 3.925
20 N -0.773 5.773
21 Si 0.912 3.088
22 H -0.267 1.267
23 H -0.273 1.273
24 H -0.257 1.257
25 C -0.239 4.239
26 C -0.022 4.022
27 H 0.053 0.947
28 H 0.062 0.938
29 H 0.056 0.944
30 H 0.063 0.937
31 H 0.067 0.933
32 H 0.066 0.934
33 H 0.063 0.937
34 H 0.052 0.948
35 H 0.056 0.944
36 H 0.062 0.938
37 H 0.075 0.925
38 H 0.075 0.925
39 H 0.048 0.952
40 H 0.048 0.952
41 H 0.377 0.623
42 H 0.064 0.936
43 H 0.064 0.936
44 H 0.396 0.604
45 H 0.087 0.913
46 H 0.119 0.881
47 H 0.286 0.714
48 H 0.098 0.902
49 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.401 0.896 -16.341 16.425
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C -0.155 4.155
3 C -0.066 4.066
4 C -0.155 4.155
5 C -0.215 4.215
6 C -0.147 4.147
7 C -0.004 4.004
8 O -0.382 6.382
9 C 0.008 3.992
10 N -0.391 5.391
11 C 0.365 3.635
12 O -0.459 6.459
13 C -0.287 4.287
14 C -0.081 4.081
15 C -0.197 4.197
16 C 0.125 3.875
17 C -0.471 4.471
18 H 0.102 0.898
19 C -0.146 4.146
20 N -0.396 5.396
21 Si 0.735 3.265
22 H -0.192 1.192
23 H -0.198 1.198
24 H -0.181 1.181
25 C -0.258 4.258
26 C -0.042 4.042
27 H 0.072 0.928
28 H 0.081 0.919
29 H 0.075 0.925
30 H 0.082 0.918
31 H 0.085 0.915
32 H 0.085 0.915
33 H 0.082 0.918
34 H 0.072 0.928
35 H 0.075 0.925
36 H 0.081 0.919
37 H 0.093 0.907
38 H 0.093 0.907
39 H 0.066 0.934
40 H 0.067 0.933
41 H 0.223 0.777
42 H 0.082 0.918
43 H 0.082 0.918
44 H 0.232 0.768
45 H 0.105 0.895
46 H 0.137 0.863
47 H 0.097 0.903
48 H 0.116 0.884
49 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 0.622 1.732 -15.908 16.014
hybrid contribution 0.972 -1.361 0.080 1.674
sum 1.593 0.371 -15.828 15.912
Atomic orbital electron populations
1.21888 0.95544 1.01741 1.02314 1.21642 0.96538 0.95187 1.02133
1.20787 0.95696 0.95791 0.94331 1.21641 0.93861 0.97872 1.02114
1.21890 1.00699 0.96552 1.02335 1.21515 1.01850 0.99954 0.91429
1.22339 0.97569 0.95239 0.85270 1.86473 1.77749 1.57714 1.16269
1.21247 0.98941 0.95862 0.83135 1.45900 1.55378 1.32587 1.05194
1.18566 0.78675 0.83179 0.83052 1.90634 1.40254 1.27802 1.87193
1.18915 1.14832 1.03135 0.91821 1.20447 0.96610 0.94145 0.96947
1.20967 1.04826 1.02307 0.91647 1.17778 0.86665 0.89904 0.93110
1.19834 1.35961 0.94037 0.97273 0.89752 1.26089 0.94164 0.97570
0.96815 1.69747 1.32726 1.07968 1.29138 0.86226 0.80239 0.79292
0.80704 1.19245 1.19755 1.18098 1.20721 1.06397 1.02120 0.96584
1.20365 0.95592 0.96674 0.91541 0.92811 0.91928 0.92536 0.91798
0.91454 0.91487 0.91794 0.92848 0.92523 0.91928 0.90652 0.90668
0.93364 0.93337 0.77651 0.91771 0.91769 0.76807 0.89540 0.86271
0.90292 0.88419 0.88144
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.65 9.21 37.16 0.34 -1.31 16
2 C -0.12 -1.17 4.46 -26.73 -0.12 -1.29 16
3 C -0.07 -0.67 0.11 -154.51 -0.02 -0.69 16
4 C -0.12 -1.15 4.46 -26.73 -0.12 -1.27 16
5 C -0.16 -1.60 9.21 37.16 0.34 -1.26 16
6 C -0.11 -1.07 3.94 -26.73 -0.11 -1.17 16
7 C 0.07 0.61 6.34 37.16 0.24 0.84 16
8 O -0.58 -5.16 13.66 -35.23 -0.48 -5.65 16
9 C 0.13 1.82 3.86 -4.04 -0.02 1.81 16
10 N -0.74 -11.96 4.91 -61.32 -0.30 -12.26 16
11 C 0.57 12.04 7.76 -12.43 -0.10 11.94 16
12 O -0.58 -13.76 16.32 5.29 0.09 -13.68 16
13 C -0.28 -6.42 5.89 -104.73 -0.62 -7.04 16
14 C -0.06 -1.37 9.47 -39.60 -0.38 -1.74 16
15 C -0.18 -4.33 8.63 -39.27 -0.34 -4.67 16
16 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16
17 C -0.44 -11.00 9.04 -37.75 -0.34 -11.34 16
18 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16
19 C 0.07 1.73 5.13 -17.31 -0.09 1.64 16
20 N -0.77 -18.38 10.97 55.56 0.61 -17.77 16
21 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16
22 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16
23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16
24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16
25 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16
26 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16
27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16
29 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16
30 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16
31 H 0.07 0.74 6.86 -51.93 -0.36 0.38 16
32 H 0.07 0.71 6.86 -51.93 -0.36 0.36 16
33 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16
34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16
35 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16
36 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16
37 H 0.07 0.78 6.43 -51.93 -0.33 0.45 16
38 H 0.07 0.77 6.43 -51.93 -0.33 0.44 16
39 H 0.05 0.36 6.43 -51.93 -0.33 0.03 16
40 H 0.05 0.37 6.43 -51.93 -0.33 0.04 16
41 H 0.38 1.65 9.12 45.56 0.42 2.07 16
42 H 0.06 0.94 6.43 -51.93 -0.33 0.61 16
43 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16
44 H 0.40 5.83 4.16 -40.82 -0.17 5.66 16
45 H 0.09 1.60 6.37 -52.49 -0.33 1.27 16
46 H 0.12 2.93 6.17 -52.48 -0.32 2.60 16
47 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16
48 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16
49 H 0.10 2.31 7.63 -52.49 -0.40 1.91 16
LS Contribution 373.99 15.07 5.64 5.64
Total: -1.00 -29.22 373.99 -8.50 -37.72
By element:
Atomic # 1 Polarization: 20.14 SS G_CDS: -6.35 Total: 13.79 kcal
Atomic # 6 Polarization: -17.27 SS G_CDS: -2.67 Total: -19.94 kcal
Atomic # 7 Polarization: -30.34 SS G_CDS: 0.31 Total: -30.03 kcal
Atomic # 8 Polarization: -18.93 SS G_CDS: -0.39 Total: -19.32 kcal
Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -29.22 -8.50 -37.72 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000270394941.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -59.519 kcal
(2) G-P(sol) polarization free energy of solvation -29.222 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds