Wall clock time and date at job start Tue Mar 31 2020 13:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47458 * 2 1 4 4 C 1.53004 * 109.46982 * 120.00013 * 2 1 3 5 5 H 1.08997 * 109.47008 * 53.02506 * 4 2 1 6 6 O 1.42898 * 109.47275 * 293.01864 * 4 2 1 7 7 C 1.53008 * 109.47116 * 173.02008 * 4 2 1 8 8 C 1.52995 * 109.46818 * 307.54673 * 7 4 2 9 9 C 1.53001 * 109.46650 * 67.54228 * 7 4 2 10 10 C 1.52999 * 109.46998 * 187.54414 * 7 4 2 11 11 N 1.46501 * 109.46656 * 180.02562 * 10 7 4 12 12 C 1.34775 * 119.99349 * 179.97438 * 11 10 7 13 13 O 1.21588 * 120.00750 * 0.02562 * 12 11 10 14 14 C 1.47643 * 119.99656 * 179.97438 * 12 11 10 15 15 C 1.40016 * 119.89797 * 359.73172 * 14 12 11 16 16 C 1.36314 * 120.11028 * 179.71709 * 15 14 12 17 17 C 1.40889 * 119.89027 * 0.57504 * 16 15 14 18 18 C 1.41108 * 120.10691 * 179.67348 * 17 16 15 19 19 H 1.07996 * 120.00330 * 210.88142 * 18 17 16 20 20 C 1.40233 * 119.99738 * 30.88450 * 18 17 16 21 21 N 1.30648 * 119.99515 * 8.15382 * 20 18 17 22 22 Si 1.86790 * 120.00103 * 188.15358 * 20 18 17 23 23 H 1.48503 * 109.47081 * 60.00046 * 22 20 18 24 24 H 1.48502 * 109.47261 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47243 * 299.99959 * 22 20 18 26 26 C 1.40892 * 119.79394 * 359.69769 * 17 16 15 27 27 C 1.36320 * 119.89172 * 359.97438 * 26 17 16 28 28 H 1.08997 * 109.46959 * 300.00356 * 1 2 3 29 29 H 1.08994 * 109.46874 * 59.99975 * 1 2 3 30 30 H 1.08997 * 109.47541 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46972 * 239.99430 * 2 1 3 32 32 H 1.08999 * 109.47293 * 84.92264 * 3 2 1 33 33 H 1.08995 * 109.47181 * 204.92385 * 3 2 1 34 34 H 1.09003 * 109.46994 * 324.91791 * 3 2 1 35 35 H 0.96695 * 113.99987 * 300.00694 * 6 4 2 36 36 H 1.08996 * 109.47864 * 60.00307 * 8 7 4 37 37 H 1.09009 * 109.46959 * 179.97438 * 8 7 4 38 38 H 1.09000 * 109.47363 * 299.99097 * 8 7 4 39 39 H 1.08999 * 109.47130 * 35.42434 * 9 7 4 40 40 H 1.09007 * 109.46519 * 155.41642 * 9 7 4 41 41 H 1.08994 * 109.47472 * 275.41523 * 9 7 4 42 42 H 1.09001 * 109.47133 * 300.00112 * 10 7 4 43 43 H 1.09000 * 109.47003 * 59.99915 * 10 7 4 44 44 H 0.96992 * 120.00265 * 359.97438 * 11 10 7 45 45 H 1.07998 * 119.94154 * 359.97438 * 15 14 12 46 46 H 1.07997 * 120.05971 * 180.24765 * 16 15 14 47 47 H 0.97009 * 119.99494 * 179.97438 * 21 20 18 48 48 H 1.07996 * 120.05849 * 179.97438 * 26 17 16 49 49 H 1.07993 * 119.94684 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5783 -1.7065 1.3138 6 8 1.7020 0.0402 2.4103 7 6 3.5600 -0.8749 1.1647 8 6 3.9334 -1.5240 -0.1694 9 6 4.2180 0.5029 1.2635 10 6 4.0482 -1.7570 2.3156 11 7 5.5036 -1.9035 2.2349 12 6 6.1581 -2.6430 3.1521 13 8 5.5408 -3.1888 4.0461 14 6 7.6249 -2.7912 3.0706 15 6 8.3329 -2.1672 2.0363 16 6 9.6878 -2.2964 1.9602 17 6 10.3743 -3.0693 2.9174 18 6 11.7760 -3.2117 2.8390 19 1 12.2472 -4.1178 3.1901 20 6 12.5571 -2.1767 2.3050 21 7 12.0111 -1.0224 2.0284 22 14 14.3780 -2.4482 1.9895 23 1 14.5522 -3.5635 1.0246 24 1 14.9730 -1.2096 1.4263 25 1 15.0564 -2.7877 3.2661 26 6 9.6568 -3.7000 3.9530 27 6 8.3028 -3.5595 4.0248 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5140 -0.8900 32 1 2.0755 1.8153 1.0236 33 1 3.0398 1.4743 -0.4330 34 1 1.3683 2.0654 -0.5907 35 1 2.0797 0.9303 2.4205 36 1 3.5857 -0.8957 -0.9893 37 1 5.0164 -1.6331 -0.2298 38 1 3.4647 -2.5056 -0.2397 39 1 3.6465 1.1303 1.9475 40 1 5.2365 0.3931 1.6361 41 1 4.2398 0.9666 0.2773 42 1 3.7820 -1.2945 3.2660 43 1 3.5793 -2.7385 2.2452 44 1 5.9961 -1.4684 1.5216 45 1 7.8052 -1.5791 1.3000 46 1 10.2336 -1.8114 1.1644 47 1 12.5515 -0.3063 1.6594 48 1 10.1787 -4.2938 4.6888 49 1 7.7520 -4.0422 4.8185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270593251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:32 Heat of formation + Delta-G solvation = -98.580774 kcal Electronic energy + Delta-G solvation = -27156.412284 eV Core-core repulsion = 23467.906302 eV Total energy + Delta-G solvation = -3688.505982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.39786 -40.39803 -38.88428 -36.65594 -35.61745 -34.88168 -33.64853 -31.88797 -31.31371 -29.45530 -28.33813 -27.42832 -27.01742 -26.26083 -23.63143 -22.78562 -21.43041 -21.12962 -20.09312 -19.35234 -18.68019 -17.66318 -17.33983 -16.96676 -16.63313 -16.23111 -15.88683 -15.75301 -15.70091 -15.03387 -14.94507 -14.53851 -14.40837 -14.04486 -13.86099 -13.67289 -13.62975 -13.30145 -13.28350 -13.21218 -12.88131 -12.85142 -12.83055 -12.62594 -12.56808 -12.38419 -12.36032 -11.84805 -11.76146 -11.57725 -11.39683 -11.33411 -11.23915 -11.17779 -10.84176 -10.49285 -10.04811 -9.58472 -9.33377 -8.71351 -6.49994 0.41754 1.12605 1.40459 1.44859 1.52209 2.13298 2.19789 2.37631 2.81312 3.41273 3.63252 3.66470 3.68245 3.82746 4.04561 4.10925 4.20830 4.24293 4.29043 4.42794 4.44315 4.56932 4.65811 4.74451 4.80966 4.82553 4.84404 4.91356 4.95265 5.01287 5.03403 5.05403 5.08013 5.12638 5.14767 5.27111 5.29267 5.32036 5.40875 5.53759 5.56529 5.59134 5.60790 5.80053 5.93204 5.99460 6.23546 6.54863 6.69863 6.78994 6.79218 6.88214 7.42909 8.23105 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022653 B = 0.002560 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.730601 B =10934.595261 C =11762.957795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C -0.163 4.163 4 C 0.125 3.875 5 H 0.091 0.909 6 O -0.573 6.573 7 C -0.093 4.093 8 C -0.147 4.147 9 C -0.162 4.162 10 C 0.137 3.863 11 N -0.717 5.717 12 C 0.568 3.432 13 O -0.608 6.608 14 C -0.284 4.284 15 C -0.055 4.055 16 C -0.186 4.186 17 C 0.102 3.898 18 C -0.479 4.479 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.811 5.811 22 Si 0.990 3.010 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.261 1.261 26 C -0.246 4.246 27 C -0.038 4.038 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.094 0.906 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.379 0.621 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.407 0.593 45 H 0.123 0.877 46 H 0.117 0.883 47 H 0.294 0.706 48 H 0.105 0.895 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 7.501 -10.199 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.219 4.219 4 C 0.066 3.934 5 H 0.109 0.891 6 O -0.384 6.384 7 C -0.094 4.094 8 C -0.204 4.204 9 C -0.219 4.219 10 C 0.013 3.987 11 N -0.370 5.370 12 C 0.361 3.639 13 O -0.492 6.492 14 C -0.288 4.288 15 C -0.074 4.074 16 C -0.206 4.206 17 C 0.099 3.901 18 C -0.507 4.507 19 H 0.102 0.898 20 C -0.183 4.183 21 N -0.435 5.435 22 Si 0.810 3.190 23 H -0.182 1.182 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.265 4.265 27 C -0.058 4.058 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.245 0.755 45 H 0.141 0.859 46 H 0.135 0.865 47 H 0.106 0.894 48 H 0.123 0.877 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.086 6.867 -9.533 19.121 hybrid contribution 1.302 0.345 -0.021 1.347 sum -13.784 7.212 -9.553 18.256 Atomic orbital electron populations 1.21796 0.94679 1.01707 1.01882 1.21819 0.96522 0.97607 0.98320 1.22326 1.02223 0.95143 1.02223 1.21914 0.91136 0.95065 0.85313 0.89081 1.86607 1.76876 1.31330 1.43585 1.21367 0.97006 0.96127 0.94880 1.22015 1.01773 1.01122 0.95466 1.22468 1.00296 0.95206 1.03901 1.21261 0.79483 0.99016 0.98910 1.45793 1.08150 1.52389 1.30669 1.18461 0.87630 0.77242 0.80591 1.90621 1.70171 1.51106 1.37345 1.19241 0.91539 1.13607 1.04418 1.20724 0.94211 0.96594 0.95917 1.21070 0.93155 1.05382 1.00970 1.18168 0.94068 0.88915 0.88994 1.20034 0.92067 1.02805 1.35769 0.89847 1.26884 1.06211 0.93561 0.91616 1.69730 1.40594 1.03136 1.30065 0.85125 0.75025 0.79155 0.79729 1.18183 1.18881 1.18577 1.20936 0.93897 1.10259 1.01441 1.20532 0.93933 0.95044 0.96267 0.93083 0.91772 0.93071 0.88792 0.92373 0.90562 0.92032 0.76776 0.89392 0.92713 0.92367 0.91506 0.93484 0.88662 0.93185 0.93254 0.75485 0.85886 0.86530 0.89449 0.87717 0.88016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.97 71.98 0.65 -1.16 16 2 C -0.12 -1.50 2.40 -10.79 -0.03 -1.53 16 3 C -0.16 -1.63 7.84 71.98 0.56 -1.06 16 4 C 0.13 2.11 2.25 30.60 0.07 2.18 16 5 H 0.09 1.71 8.13 -2.39 -0.02 1.69 16 6 O -0.57 -11.33 12.40 -148.98 -1.85 -13.18 16 7 C -0.09 -1.70 0.40 -52.18 -0.02 -1.72 16 8 C -0.15 -2.34 7.62 71.98 0.55 -1.79 16 9 C -0.16 -2.61 7.15 71.98 0.51 -2.10 16 10 C 0.14 3.83 4.47 86.38 0.39 4.22 16 11 N -0.72 -23.13 4.64 -466.16 -2.16 -25.29 16 12 C 0.57 24.34 7.76 86.73 0.67 25.01 16 13 O -0.61 -30.00 16.32 -3.99 -0.07 -30.06 16 14 C -0.28 -13.02 5.89 -19.93 -0.12 -13.13 16 15 C -0.06 -2.41 9.47 22.25 0.21 -2.20 16 16 C -0.19 -9.15 8.58 22.47 0.19 -8.96 16 17 C 0.10 5.29 5.54 -21.28 -0.12 5.17 16 18 C -0.48 -24.25 9.05 23.46 0.21 -24.04 16 19 H 0.08 4.05 7.86 -2.91 -0.02 4.03 16 20 C 0.03 1.60 5.29 85.35 0.45 2.05 16 21 N -0.81 -38.86 10.84 21.87 0.24 -38.62 16 22 Si 0.99 35.12 29.57 68.60 2.03 37.15 16 23 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 25 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 26 C -0.25 -12.28 9.73 22.47 0.22 -12.07 16 27 C -0.04 -1.87 9.52 22.25 0.21 -1.66 16 28 H 0.05 0.74 7.88 -2.39 -0.02 0.72 16 29 H 0.06 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.99 5.91 -2.38 -0.01 0.97 16 32 H 0.06 0.57 4.89 -2.39 -0.01 0.56 16 33 H 0.08 0.67 5.40 -2.39 -0.01 0.66 16 34 H 0.06 0.56 7.89 -2.39 -0.02 0.54 16 35 H 0.38 5.62 4.74 -74.06 -0.35 5.27 16 36 H 0.09 0.99 6.14 -2.39 -0.01 0.98 16 37 H 0.05 0.97 6.86 -2.38 -0.02 0.95 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 0.95 4.91 -2.39 -0.01 0.94 16 40 H 0.05 0.94 6.54 -2.38 -0.02 0.93 16 41 H 0.09 1.12 5.10 -2.39 -0.01 1.11 16 42 H 0.05 1.60 7.90 -2.39 -0.02 1.58 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.41 11.34 4.34 -92.71 -0.40 10.94 16 45 H 0.12 4.32 6.37 -2.91 -0.02 4.30 16 46 H 0.12 5.80 6.27 -2.91 -0.02 5.78 16 47 H 0.29 12.63 8.29 -92.70 -0.77 11.86 16 48 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 49 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 Total: -1.00 -63.34 370.70 3.04 -60.31 By element: Atomic # 1 Polarization: 42.24 SS G_CDS: 0.23 Total: 42.47 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: 4.62 Total: -32.77 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -1.93 Total: -63.91 kcal Atomic # 8 Polarization: -41.33 SS G_CDS: -1.91 Total: -43.24 kcal Atomic # 14 Polarization: 35.12 SS G_CDS: 2.03 Total: 37.15 kcal Total: -63.34 3.04 -60.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270593251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.275 kcal (2) G-P(sol) polarization free energy of solvation -63.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds