Wall clock time and date at job start Tue Mar 31 2020 12:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 113.99802 * 2 1 4 4 H 1.08998 * 109.47141 * 29.99389 * 3 2 1 5 5 C 1.50708 * 109.47086 * 269.99911 * 3 2 1 6 6 O 1.21283 * 119.99760 * 342.67031 * 5 3 2 7 7 N 1.34775 * 120.00254 * 162.67295 * 5 3 2 8 8 C 1.46495 * 119.99905 * 4.15330 * 7 5 3 9 9 C 1.50695 * 109.47249 * 95.48965 * 8 7 5 10 10 H 1.08008 * 119.99714 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00319 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00183 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 119.99828 * 359.97438 * 11 9 8 14 14 H 1.48503 * 109.46856 * 90.00653 * 13 11 9 15 15 H 1.48500 * 109.47464 * 210.00039 * 13 11 9 16 16 H 1.48500 * 109.47563 * 330.00413 * 13 11 9 17 17 C 1.46501 * 120.00028 * 184.15690 * 7 5 3 18 18 C 1.53000 * 109.46994 * 89.99636 * 17 7 5 19 19 C 1.53000 * 109.47017 * 179.97438 * 18 17 7 20 20 C 1.52992 * 109.47339 * 174.99974 * 19 18 17 21 21 C 1.52999 * 109.47503 * 295.00353 * 19 18 17 22 22 C 1.50697 * 109.47682 * 149.99986 * 3 2 1 23 23 C 1.38244 * 119.99810 * 45.82187 * 22 3 2 24 24 C 1.38230 * 119.99943 * 179.81189 * 23 22 3 25 25 C 1.38242 * 119.99886 * 0.40645 * 24 23 22 26 26 C 1.38239 * 120.00117 * 359.84446 * 25 24 23 27 27 C 1.38226 * 119.99652 * 359.96746 * 26 25 24 28 28 H 1.09006 * 109.46486 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47239 * 299.99842 * 1 2 3 30 30 H 1.08994 * 109.47166 * 60.00940 * 1 2 3 31 31 H 1.08999 * 109.47360 * 215.48734 * 8 7 5 32 32 H 1.09006 * 109.47521 * 335.48826 * 8 7 5 33 33 H 0.96996 * 120.00122 * 179.97438 * 12 11 9 34 34 H 1.08993 * 109.47136 * 209.99851 * 17 7 5 35 35 H 1.09001 * 109.47112 * 330.00020 * 17 7 5 36 36 H 1.09002 * 109.47421 * 299.99953 * 18 17 7 37 37 H 1.09001 * 109.46878 * 60.00240 * 18 17 7 38 38 H 1.09000 * 109.47143 * 55.00361 * 19 18 17 39 39 H 1.09006 * 109.47530 * 59.99975 * 20 19 18 40 40 H 1.08998 * 109.47483 * 179.97438 * 20 19 18 41 41 H 1.09002 * 109.47547 * 300.00370 * 20 19 18 42 42 H 1.09001 * 109.47113 * 59.99676 * 21 19 18 43 43 H 1.08998 * 109.47446 * 180.02562 * 21 19 18 44 44 H 1.09000 * 109.46927 * 300.00140 * 21 19 18 45 45 H 1.07996 * 119.99914 * 0.02562 * 23 22 3 46 46 H 1.07997 * 120.00457 * 180.22894 * 24 23 22 47 47 H 1.08001 * 119.99950 * 179.83567 * 25 24 23 48 48 H 1.08001 * 120.00131 * 179.97438 * 26 25 24 49 49 H 1.08006 * 120.00034 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5137 5 6 2.2145 1.7644 -1.4209 6 8 2.1980 0.9582 -2.3268 7 7 2.4155 3.0707 -1.6849 8 6 2.5263 4.0317 -0.5848 9 6 3.9802 4.2547 -0.2571 10 1 4.7452 3.7325 -0.8125 11 6 4.3338 5.1247 0.7525 12 7 5.6026 5.3197 1.0381 13 14 3.0106 6.0274 1.7135 14 1 2.6129 5.2148 2.8912 15 1 3.5384 7.3376 2.1718 16 1 1.8286 6.2473 0.8419 17 6 2.5232 3.5295 -3.0720 18 6 1.1343 3.9004 -3.5957 19 6 1.2468 4.3802 -5.0442 20 6 -0.1528 4.6324 -5.6081 21 6 2.0566 5.6776 -5.0903 22 6 3.3385 1.2641 0.7104 23 6 4.2402 0.2539 0.4317 24 6 5.4603 0.2181 1.0804 25 6 5.7754 1.1878 2.0140 26 6 4.8716 2.1950 2.2965 27 6 3.6532 2.2329 1.6449 28 1 -0.3632 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.0715 4.9769 -0.8808 32 1 2.0119 3.6402 0.2930 33 1 5.8514 5.9320 1.7481 34 1 3.1734 4.4031 -3.1163 35 1 2.9425 2.7330 -3.6867 36 1 0.4840 3.0268 -3.5515 37 1 0.7150 4.6970 -2.9810 38 1 1.7473 3.6182 -5.6415 39 1 -0.6535 5.3945 -5.0108 40 1 -0.0727 4.9747 -6.6399 41 1 -0.7298 3.7082 -5.5753 42 1 3.0538 5.4979 -4.6886 43 1 2.1364 6.0196 -6.1222 44 1 1.5561 6.4396 -4.4930 45 1 3.9928 -0.5053 -0.2954 46 1 6.1662 -0.5689 0.8601 47 1 6.7276 1.1583 2.5228 48 1 5.1176 2.9522 3.0262 49 1 2.9469 3.0196 1.8659 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272885509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:45 Heat of formation + Delta-G solvation = -72.626663 kcal Electronic energy + Delta-G solvation = -28841.179390 eV Core-core repulsion = 25153.798863 eV Total energy + Delta-G solvation = -3687.380527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55671 -39.65572 -38.57422 -37.62543 -36.45728 -34.44291 -33.14068 -31.65189 -30.86650 -29.50996 -28.26373 -27.99410 -26.87741 -24.54336 -24.27853 -23.34450 -22.43312 -20.89541 -20.14657 -18.97954 -18.47290 -17.91828 -17.83328 -16.81102 -16.55882 -16.27630 -16.18272 -15.60491 -15.36367 -15.32795 -15.26774 -14.66950 -14.60559 -14.41063 -14.36242 -13.96515 -13.76493 -13.59655 -13.31437 -13.21350 -13.10415 -12.93045 -12.70088 -12.56040 -12.34548 -12.17183 -12.13684 -11.94297 -11.79758 -11.73921 -11.61154 -11.54468 -11.53621 -11.40541 -10.70258 -10.38028 -9.55719 -9.50127 -9.40958 -8.16219 -6.17442 0.51041 0.73179 1.36651 1.43276 1.47417 1.61080 2.07463 2.37438 2.76146 3.09212 3.15455 3.60482 3.77403 3.87363 3.93919 3.97604 4.05668 4.21213 4.28109 4.29870 4.36798 4.47933 4.49205 4.54752 4.64717 4.66771 4.73979 4.74871 4.77464 4.82066 4.84996 4.88914 4.93025 5.03050 5.09977 5.13219 5.18100 5.27262 5.30663 5.46477 5.49537 5.50396 5.63464 5.68203 5.72475 5.80855 6.04219 6.24257 6.27300 6.60311 6.80993 7.20853 7.41280 8.98594 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010106 B = 0.006076 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2769.840365 B = 4607.014944 C = 6167.134012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.375 6.375 3 C 0.128 3.872 4 H 0.100 0.900 5 C 0.497 3.503 6 O -0.578 6.578 7 N -0.588 5.588 8 C 0.211 3.789 9 C -0.514 4.514 10 H 0.028 0.972 11 C 0.051 3.949 12 N -0.918 5.918 13 Si 0.896 3.104 14 H -0.253 1.253 15 H -0.289 1.289 16 H -0.244 1.244 17 C 0.117 3.883 18 C -0.115 4.115 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.148 4.148 22 C -0.099 4.099 23 C -0.105 4.105 24 C -0.139 4.139 25 C -0.114 4.114 26 C -0.113 4.113 27 C -0.051 4.051 28 H 0.110 0.890 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.111 0.889 46 H 0.140 0.860 47 H 0.136 0.864 48 H 0.113 0.887 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.261 -2.724 -2.011 10.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.293 6.293 3 C 0.067 3.933 4 H 0.117 0.883 5 C 0.285 3.715 6 O -0.459 6.459 7 N -0.319 5.319 8 C 0.089 3.911 9 C -0.552 4.552 10 H 0.046 0.954 11 C -0.150 4.150 12 N -0.557 5.557 13 Si 0.720 3.280 14 H -0.178 1.178 15 H -0.215 1.215 16 H -0.168 1.168 17 C -0.006 4.006 18 C -0.153 4.153 19 C -0.111 4.111 20 C -0.197 4.197 21 C -0.205 4.205 22 C -0.100 4.100 23 C -0.123 4.123 24 C -0.157 4.157 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.069 4.069 28 H 0.129 0.871 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.129 0.871 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.131 0.869 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.053 -3.199 -2.363 10.811 hybrid contribution -0.033 0.944 0.421 1.034 sum -10.086 -2.255 -1.943 10.516 Atomic orbital electron populations 1.23093 0.79191 1.04617 1.00550 1.87962 1.21729 1.25062 1.94523 1.20669 0.94543 0.86550 0.91538 0.88295 1.21324 0.76285 0.82234 0.91680 1.90576 1.53565 1.53712 1.48087 1.48015 1.68773 1.07012 1.08103 1.19841 0.96689 0.88879 0.85668 1.21071 0.90795 1.25344 1.18019 0.95382 1.25271 0.96377 0.96261 0.97089 1.70012 1.17522 1.36767 1.31353 0.86520 0.81375 0.79172 0.80940 1.17775 1.21535 1.16780 1.21481 0.98243 0.99411 0.81417 1.21885 0.95839 1.00605 0.96984 1.21035 0.97667 0.97890 0.94462 1.21778 0.95080 1.01628 1.01223 1.21884 0.99586 0.96785 1.02249 1.19143 0.94537 0.97710 0.98608 1.20907 0.94154 0.97878 0.99347 1.21203 0.96624 1.00234 0.97646 1.21307 0.99372 0.94498 0.97970 1.20946 0.93892 0.97676 1.00585 1.20710 0.97462 0.94964 0.93775 0.87150 0.91881 0.94659 0.94036 0.94220 0.92591 0.90442 0.92490 0.93037 0.91537 0.91627 0.92355 0.91388 0.92906 0.93569 0.91345 0.92465 0.87093 0.84257 0.84633 0.86919 0.86995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 10.81 113.37 1.23 1.78 16 2 O -0.38 -13.46 9.48 -130.54 -1.24 -14.70 16 3 C 0.13 4.87 2.00 29.10 0.06 4.93 16 4 H 0.10 3.36 6.06 -2.39 -0.01 3.35 16 5 C 0.50 21.11 6.83 87.66 0.60 21.71 16 6 O -0.58 -27.32 16.15 15.40 0.25 -27.07 16 7 N -0.59 -24.16 2.46 -826.17 -2.03 -26.19 16 8 C 0.21 8.81 3.72 85.63 0.32 9.12 16 9 C -0.51 -25.57 7.15 25.60 0.18 -25.39 16 10 H 0.03 1.68 8.06 -2.91 -0.02 1.65 16 11 C 0.05 2.53 4.51 84.66 0.38 2.91 16 12 N -0.92 -49.81 13.96 21.45 0.30 -49.51 16 13 Si 0.90 36.70 26.22 68.60 1.80 38.50 16 14 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 15 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 17 C 0.12 4.33 5.21 86.38 0.45 4.78 16 18 C -0.11 -3.41 5.01 30.59 0.15 -3.26 16 19 C -0.09 -2.23 2.92 -10.80 -0.03 -2.26 16 20 C -0.14 -2.75 9.19 71.98 0.66 -2.09 16 21 C -0.15 -3.44 8.95 71.98 0.64 -2.80 16 22 C -0.10 -4.02 4.43 -19.86 -0.09 -4.10 16 23 C -0.10 -4.16 9.30 22.27 0.21 -3.95 16 24 C -0.14 -4.99 10.05 22.27 0.22 -4.76 16 25 C -0.11 -4.13 10.05 22.27 0.22 -3.90 16 26 C -0.11 -4.50 9.90 22.27 0.22 -4.28 16 27 C -0.05 -2.07 5.90 22.27 0.13 -1.94 16 28 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 29 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 30 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.67 7.17 -2.39 -0.02 1.66 16 32 H 0.04 1.57 3.59 -2.38 -0.01 1.56 16 33 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 34 H 0.08 2.93 6.49 -2.39 -0.02 2.91 16 35 H 0.06 2.27 7.37 -2.39 -0.02 2.25 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.21 6.56 -2.39 -0.02 1.20 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.11 4.46 7.95 -2.91 -0.02 4.43 16 46 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 47 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 48 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 49 H 0.11 4.46 4.98 -2.91 -0.01 4.44 16 Total: -1.00 -62.56 385.17 5.50 -57.06 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: 0.86 Total: 35.40 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 5.56 Total: -13.49 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.73 Total: -75.70 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.99 Total: -41.77 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 1.80 Total: 38.50 kcal Total: -62.56 5.50 -57.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272885509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.571 kcal (2) G-P(sol) polarization free energy of solvation -62.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds