Wall clock time and date at job start Tue Mar 31 2020 12:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.99880 * 89.99779 * 9 8 7 11 11 C 1.52999 * 109.47116 * 90.00184 * 10 9 8 12 12 C 1.53001 * 109.46931 * 59.99770 * 11 10 9 13 13 C 1.52995 * 109.47541 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.47190 * 300.00656 * 11 10 9 15 15 C 1.34777 * 120.00266 * 270.00518 * 9 8 7 16 16 O 1.21682 * 119.99988 * 359.97438 * 15 9 8 17 17 C 1.46376 * 119.99811 * 179.97438 * 15 9 8 18 18 H 1.07999 * 120.00151 * 359.97438 * 17 15 9 19 19 C 1.40050 * 119.99871 * 179.97438 * 17 15 9 20 20 N 1.30676 * 119.99970 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00162 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47102 * 119.99507 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99862 * 21 19 17 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 28 28 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.08997 * 109.47355 * 210.00390 * 10 9 8 37 37 H 1.09005 * 109.47024 * 330.01005 * 10 9 8 38 38 H 1.09006 * 109.46890 * 60.00505 * 12 11 10 39 39 H 1.08999 * 109.47116 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.47229 * 300.00445 * 12 11 10 41 41 H 1.08998 * 109.47080 * 59.99622 * 13 11 10 42 42 H 1.08999 * 109.47475 * 180.02562 * 13 11 10 43 43 H 1.09006 * 109.46918 * 299.99885 * 13 11 10 44 44 H 1.08998 * 109.47395 * 59.99294 * 14 11 10 45 45 H 1.08999 * 109.47071 * 179.97438 * 14 11 10 46 46 H 1.09005 * 109.46535 * 299.99469 * 14 11 10 47 47 H 0.96996 * 119.99793 * 180.02562 * 20 19 17 48 48 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 49 49 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 6.3443 6.8575 -1.4387 11 6 6.8530 6.8859 -2.8813 12 6 6.2776 8.1072 -3.6011 13 6 8.3809 6.9659 -2.8819 14 6 6.4092 5.6123 -3.6038 15 6 4.1468 7.9103 -1.4367 16 8 2.9317 7.8462 -1.4367 17 6 4.8109 9.2148 -1.4351 18 1 5.8894 9.2717 -1.4347 19 6 4.0477 10.3891 -1.4341 20 7 2.7427 10.3202 -1.4351 21 14 4.8951 12.0538 -1.4313 22 1 6.3674 11.8598 -1.4311 23 1 4.4967 12.8141 -2.6431 24 1 4.4949 12.8108 -0.2181 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 6.6604 7.7649 -0.9240 37 1 6.7542 5.9873 -0.9260 38 1 6.5937 9.0147 -3.0864 39 1 6.6404 8.1277 -4.6287 40 1 5.1891 8.0498 -3.6007 41 1 8.7905 6.0956 -2.3692 42 1 8.7433 6.9866 -3.9096 43 1 8.6974 7.8732 -2.3671 44 1 5.3208 5.5548 -3.6034 45 1 6.7713 5.6327 -4.6317 46 1 6.8192 4.7421 -3.0910 47 1 2.2142 11.1335 -1.4347 48 1 1.3340 4.5114 0.0143 49 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274660160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:40 Heat of formation + Delta-G solvation = -62.332306 kcal Electronic energy + Delta-G solvation = -27600.978697 eV Core-core repulsion = 23914.044567 eV Total energy + Delta-G solvation = -3686.934130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.08657 -38.74908 -37.57463 -35.96200 -33.85171 -32.36641 -31.58125 -30.94819 -28.63744 -27.50631 -26.83588 -26.56515 -25.60006 -24.99656 -22.82461 -22.49318 -20.69282 -19.14620 -18.44641 -18.12013 -16.33701 -16.08730 -15.79204 -15.63321 -15.49941 -14.62515 -14.54914 -14.26786 -14.04810 -13.86984 -13.57953 -13.39744 -13.09690 -12.81352 -12.63208 -12.34763 -12.16807 -12.00533 -11.93688 -11.74892 -11.57291 -11.31742 -11.10638 -11.02509 -10.98212 -10.80687 -10.74936 -10.64362 -10.51836 -10.37501 -10.19007 -10.09464 -9.95914 -9.56989 -8.88951 -8.82172 -8.02182 -7.52888 -7.12558 -6.16401 -4.56643 1.45200 1.54877 3.12437 3.21792 3.23509 3.24545 3.86741 4.10468 4.57295 4.58854 4.82455 4.93799 5.00812 5.04791 5.26230 5.30846 5.35904 5.37982 5.46021 5.53156 5.54780 5.68827 5.76364 5.78391 5.94787 6.00227 6.05050 6.07809 6.14537 6.18433 6.21491 6.34517 6.37033 6.40306 6.49375 6.52302 6.54046 6.63167 6.68668 6.75971 6.83027 6.91106 6.95898 6.98982 7.36404 7.41069 7.49749 7.70671 8.19802 8.41088 9.06181 9.47877 10.61407 10.80711 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003367 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.414288 B = 8313.694561 C = 9664.539683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.323 6.323 3 C 0.110 3.890 4 C -0.152 4.152 5 C -0.082 4.082 6 C -0.100 4.100 7 C -0.093 4.093 8 C 0.132 3.868 9 N -0.638 5.638 10 C 0.140 3.860 11 C -0.087 4.087 12 C -0.131 4.131 13 C -0.137 4.137 14 C -0.137 4.137 15 C 0.560 3.440 16 O -0.578 6.578 17 C -0.536 4.536 18 H 0.076 0.924 19 C 0.087 3.913 20 N -0.768 5.768 21 Si 0.897 3.103 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.278 1.278 25 C -0.073 4.073 26 C -0.205 4.205 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.071 0.929 41 H 0.047 0.953 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.265 0.735 48 H 0.129 0.871 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.339 -14.411 1.138 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.236 6.236 3 C 0.066 3.934 4 C -0.171 4.171 5 C -0.100 4.100 6 C -0.101 4.101 7 C -0.132 4.132 8 C 0.008 3.992 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.088 4.088 12 C -0.188 4.188 13 C -0.194 4.194 14 C -0.194 4.194 15 C 0.366 3.634 16 O -0.461 6.461 17 C -0.572 4.572 18 H 0.094 0.906 19 C -0.132 4.132 20 N -0.398 5.398 21 Si 0.722 3.278 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.203 1.203 25 C -0.091 4.091 26 C -0.223 4.223 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.147 0.853 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.551 -14.522 1.136 14.788 hybrid contribution 0.192 0.949 -0.023 0.968 sum 2.743 -13.573 1.113 13.892 Atomic orbital electron populations 1.23005 0.78723 1.03539 1.01415 1.86028 1.21138 1.27291 1.89185 1.18996 0.92383 0.83928 0.98102 1.20346 0.91238 0.98453 1.07029 1.20871 0.99731 0.90966 0.98396 1.19954 0.93557 0.95533 1.01066 1.21039 0.99841 0.92356 0.99984 1.21064 0.98398 0.85948 0.93815 1.48021 1.04729 1.05057 1.79626 1.21230 0.82168 1.01056 0.94089 1.21007 0.94240 0.96124 0.97440 1.21997 1.02667 0.96964 0.97207 1.21810 0.95518 1.01117 1.00997 1.21915 1.01875 0.96617 0.99008 1.18194 0.86234 0.82907 0.76041 1.90599 1.14106 1.86360 1.54993 1.21110 0.93801 0.89012 1.53312 0.90595 1.25696 0.94449 1.00147 0.92886 1.70031 1.05291 1.28558 1.35880 0.86473 0.80441 0.82680 0.78173 1.18721 1.20282 1.20317 1.21007 0.94391 0.97152 0.96573 1.21215 0.99808 0.92379 1.08931 0.92693 0.88549 0.92768 0.85635 0.85529 0.90542 0.91789 0.92450 0.91185 0.90333 0.93415 0.91704 0.95373 0.90984 0.93404 0.93277 0.92751 0.92023 0.93827 0.93723 0.92374 0.85345 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -3.96 10.50 -19.44 -0.20 -4.17 16 3 C 0.11 1.49 6.69 -39.21 -0.26 1.22 16 4 C -0.15 -1.97 9.99 -39.43 -0.39 -2.37 16 5 C -0.08 -1.09 9.69 -39.61 -0.38 -1.47 16 6 C -0.10 -1.53 5.14 -104.60 -0.54 -2.06 16 7 C -0.09 -1.59 5.67 -27.88 -0.16 -1.75 16 8 C 0.13 2.48 4.29 -4.04 -0.02 2.47 16 9 N -0.64 -13.48 2.00 -175.35 -0.35 -13.83 16 10 C 0.14 2.48 4.51 -4.04 -0.02 2.46 16 11 C -0.09 -1.40 0.84 -154.51 -0.13 -1.53 16 12 C -0.13 -2.46 6.88 37.16 0.26 -2.21 16 13 C -0.14 -1.82 8.47 37.16 0.31 -1.51 16 14 C -0.14 -2.07 7.22 37.16 0.27 -1.80 16 15 C 0.56 14.90 6.21 -12.99 -0.08 14.82 16 16 O -0.58 -17.82 14.60 5.21 0.08 -17.74 16 17 C -0.54 -14.05 6.58 -35.63 -0.23 -14.28 16 18 H 0.08 1.84 4.39 -52.49 -0.23 1.61 16 19 C 0.09 2.34 5.50 -17.36 -0.10 2.25 16 20 N -0.77 -22.36 11.83 55.55 0.66 -21.70 16 21 Si 0.90 19.65 29.56 -169.99 -5.02 14.62 16 22 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.07 -1.11 9.69 -39.61 -0.38 -1.49 16 26 C -0.20 -2.76 9.04 -39.43 -0.36 -3.12 16 27 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 31 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.08 1.52 8.08 -51.93 -0.42 1.10 16 33 H 0.06 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.06 0.95 6.05 -51.93 -0.31 0.63 16 35 H 0.07 1.51 7.42 -51.92 -0.39 1.13 16 36 H 0.08 1.49 6.09 -51.93 -0.32 1.17 16 37 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 38 H 0.06 1.27 6.22 -51.93 -0.32 0.95 16 39 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.07 1.62 6.01 -51.93 -0.31 1.31 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 1.05 5.99 -51.93 -0.31 0.74 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 47 H 0.27 7.09 8.29 -40.82 -0.34 6.75 16 48 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 49 H 0.12 1.40 6.30 -52.49 -0.33 1.07 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -32.15 383.46 -8.22 -40.38 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.94 Total: 5.80 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -1.22 Total: -9.14 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.31 Total: -35.53 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.13 Total: -21.91 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.15 -8.22 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274660160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.956 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds