Wall clock time and date at job start Tue Mar 31 2020 12:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 N 1.46496 * 109.47378 * 179.97438 * 8 7 6 10 10 C 1.46504 * 119.99880 * 89.99779 * 9 8 7 11 11 C 1.52999 * 109.47116 * 90.00184 * 10 9 8 12 12 C 1.53001 * 109.46931 * 59.99770 * 11 10 9 13 13 C 1.52995 * 109.47541 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.47190 * 300.00656 * 11 10 9 15 15 C 1.34777 * 120.00266 * 270.00518 * 9 8 7 16 16 O 1.21682 * 119.99988 * 359.97438 * 15 9 8 17 17 C 1.46376 * 119.99811 * 179.97438 * 15 9 8 18 18 H 1.07999 * 120.00151 * 359.97438 * 17 15 9 19 19 C 1.40050 * 119.99871 * 179.97438 * 17 15 9 20 20 N 1.30676 * 119.99970 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00162 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47102 * 119.99507 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99862 * 21 19 17 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 28 28 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 1.08997 * 109.47355 * 210.00390 * 10 9 8 37 37 H 1.09005 * 109.47024 * 330.01005 * 10 9 8 38 38 H 1.09006 * 109.46890 * 60.00505 * 12 11 10 39 39 H 1.08999 * 109.47116 * 179.97438 * 12 11 10 40 40 H 1.08998 * 109.47229 * 300.00445 * 12 11 10 41 41 H 1.08998 * 109.47080 * 59.99622 * 13 11 10 42 42 H 1.08999 * 109.47475 * 180.02562 * 13 11 10 43 43 H 1.09006 * 109.46918 * 299.99885 * 13 11 10 44 44 H 1.08998 * 109.47395 * 59.99294 * 14 11 10 45 45 H 1.08999 * 109.47071 * 179.97438 * 14 11 10 46 46 H 1.09005 * 109.46535 * 299.99469 * 14 11 10 47 47 H 0.96996 * 119.99793 * 180.02562 * 20 19 17 48 48 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 49 49 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 7 4.8813 6.7803 -1.4383 10 6 6.3443 6.8575 -1.4387 11 6 6.8530 6.8859 -2.8813 12 6 6.2776 8.1072 -3.6011 13 6 8.3809 6.9659 -2.8819 14 6 6.4092 5.6123 -3.6038 15 6 4.1468 7.9103 -1.4367 16 8 2.9317 7.8462 -1.4367 17 6 4.8109 9.2148 -1.4351 18 1 5.8894 9.2717 -1.4347 19 6 4.0477 10.3891 -1.4341 20 7 2.7427 10.3202 -1.4351 21 14 4.8951 12.0538 -1.4313 22 1 6.3674 11.8598 -1.4311 23 1 4.4967 12.8141 -2.6431 24 1 4.4949 12.8108 -0.2181 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 6.6604 7.7649 -0.9240 37 1 6.7542 5.9873 -0.9260 38 1 6.5937 9.0147 -3.0864 39 1 6.6404 8.1277 -4.6287 40 1 5.1891 8.0498 -3.6007 41 1 8.7905 6.0956 -2.3692 42 1 8.7433 6.9866 -3.9096 43 1 8.6974 7.8732 -2.3671 44 1 5.3208 5.5548 -3.6034 45 1 6.7713 5.6327 -4.6317 46 1 6.8192 4.7421 -3.0910 47 1 2.2142 11.1335 -1.4347 48 1 1.3340 4.5114 0.0143 49 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274660160.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:39 Heat of formation + Delta-G solvation = -80.369367 kcal Electronic energy + Delta-G solvation = -27601.760843 eV Core-core repulsion = 23914.044567 eV Total energy + Delta-G solvation = -3687.716276 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.12105 -40.35764 -38.64223 -37.69720 -35.45783 -34.37952 -33.00723 -32.02470 -29.99301 -28.70865 -28.07533 -27.73768 -27.31085 -26.44792 -24.33120 -23.55913 -21.91822 -20.92754 -19.92935 -19.08251 -17.99551 -17.66343 -17.15607 -16.87637 -16.63485 -16.14134 -15.94015 -15.87089 -15.21330 -15.02330 -14.84804 -14.58705 -14.49670 -14.23941 -14.04140 -13.86522 -13.58115 -13.33104 -13.08108 -13.04842 -12.90778 -12.80256 -12.72974 -12.42894 -12.35223 -12.20196 -12.12229 -11.98456 -11.89772 -11.85313 -11.67414 -11.56836 -11.35415 -11.12839 -10.86197 -9.95845 -9.65841 -9.19881 -8.80035 -8.19862 -6.66396 0.38597 0.43264 1.38609 1.39987 1.55388 2.25996 2.38194 2.55291 2.75396 2.97677 3.72681 3.82014 3.93039 4.04405 4.09364 4.13069 4.14081 4.26522 4.33608 4.37198 4.45294 4.52043 4.58269 4.63300 4.69296 4.71897 4.78440 4.81203 4.90619 4.96937 4.98399 5.06625 5.10694 5.11628 5.20332 5.25819 5.28188 5.33862 5.37639 5.40309 5.46232 5.50030 5.66656 5.75693 5.79521 5.81704 5.94763 6.28507 6.43897 6.55389 6.99080 7.56757 8.60066 8.79366 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015344 B = 0.003367 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.414288 B = 8313.694561 C = 9664.539683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C 0.109 3.891 4 C -0.153 4.153 5 C -0.073 4.073 6 C -0.118 4.118 7 C -0.078 4.078 8 C 0.139 3.861 9 N -0.635 5.635 10 C 0.134 3.866 11 C -0.083 4.083 12 C -0.125 4.125 13 C -0.129 4.129 14 C -0.133 4.133 15 C 0.549 3.451 16 O -0.635 6.635 17 C -0.545 4.545 18 H 0.095 0.905 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.977 3.023 22 H -0.242 1.242 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.094 4.094 26 C -0.208 4.208 27 H 0.058 0.942 28 H 0.123 0.877 29 H 0.060 0.940 30 H 0.151 0.849 31 H 0.155 0.845 32 H 0.033 0.967 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.032 0.968 45 H 0.056 0.944 46 H 0.070 0.930 47 H 0.268 0.732 48 H 0.106 0.894 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.706 -16.410 1.111 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.245 6.245 3 C 0.064 3.936 4 C -0.171 4.171 5 C -0.091 4.091 6 C -0.119 4.119 7 C -0.117 4.117 8 C 0.015 3.985 9 N -0.369 5.369 10 C 0.010 3.990 11 C -0.085 4.085 12 C -0.182 4.182 13 C -0.187 4.187 14 C -0.190 4.190 15 C 0.355 3.645 16 O -0.522 6.522 17 C -0.582 4.582 18 H 0.113 0.887 19 C -0.185 4.185 20 N -0.456 5.456 21 Si 0.798 3.202 22 H -0.165 1.165 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.112 4.112 26 C -0.226 4.226 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.079 0.921 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.052 0.948 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.043 0.957 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.124 0.876 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.970 -16.567 1.109 17.645 hybrid contribution -0.916 1.418 -0.040 1.688 sum 5.055 -15.149 1.069 16.006 Atomic orbital electron populations 1.23309 0.76816 1.05560 1.01909 1.86026 1.23139 1.26476 1.88844 1.19191 0.92948 0.84207 0.97229 1.20678 0.91312 0.99188 1.05924 1.21079 1.00916 0.90026 0.97029 1.19825 0.93561 0.95289 1.03206 1.20797 1.00131 0.92551 0.98205 1.21096 0.96886 0.85480 0.95032 1.47822 1.06293 1.04557 1.78257 1.21486 0.79679 1.02013 0.95783 1.20975 0.96470 0.95306 0.95718 1.21877 0.99610 0.98055 0.98700 1.21735 0.92446 1.02260 1.02229 1.21866 1.00114 0.96928 1.00114 1.18519 0.85797 0.84736 0.75470 1.90553 1.16654 1.87593 1.57423 1.21507 0.94702 0.89271 1.52723 0.88730 1.26835 0.94947 1.04823 0.91876 1.70224 1.07546 1.29903 1.37954 0.85256 0.80101 0.76704 0.78125 1.16520 1.19980 1.19907 1.20971 0.94810 0.97260 0.98190 1.21331 1.00819 0.91810 1.08686 0.92350 0.85852 0.92138 0.83164 0.82773 0.94805 0.89702 0.89223 0.95292 0.91638 0.89948 0.92930 0.93589 0.95737 0.91042 0.92055 0.92801 0.94877 0.92511 0.91087 0.92247 0.87620 0.84203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.44 10.50 -92.47 -0.97 -8.41 16 3 C 0.11 2.78 6.69 22.51 0.15 2.93 16 4 C -0.15 -3.57 9.99 22.37 0.22 -3.35 16 5 C -0.07 -1.77 9.69 22.25 0.22 -1.56 16 6 C -0.12 -3.63 5.14 -19.85 -0.10 -3.73 16 7 C -0.08 -2.75 5.67 29.85 0.17 -2.58 16 8 C 0.14 5.39 4.29 86.38 0.37 5.76 16 9 N -0.64 -27.58 2.00 -826.90 -1.65 -29.23 16 10 C 0.13 4.55 4.51 86.38 0.39 4.94 16 11 C -0.08 -2.51 0.84 -52.18 -0.04 -2.55 16 12 C -0.13 -4.66 6.88 71.98 0.50 -4.17 16 13 C -0.13 -2.91 8.47 71.98 0.61 -2.30 16 14 C -0.13 -3.67 7.22 71.98 0.52 -3.15 16 15 C 0.55 30.88 6.21 86.36 0.54 31.41 16 16 O -0.63 -42.33 14.60 -4.29 -0.06 -42.39 16 17 C -0.55 -29.59 6.58 24.83 0.16 -29.43 16 18 H 0.09 4.62 4.39 -2.91 -0.01 4.60 16 19 C 0.03 1.61 5.50 85.30 0.47 2.08 16 20 N -0.83 -50.80 11.83 21.84 0.26 -50.54 16 21 Si 0.98 41.10 29.56 68.60 2.03 43.13 16 22 H -0.24 -9.26 7.11 99.48 0.71 -8.56 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 C -0.09 -3.02 9.69 22.25 0.22 -2.81 16 26 C -0.21 -5.63 9.04 22.37 0.20 -5.42 16 27 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 28 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 0.83 7.66 -2.39 -0.02 0.82 16 30 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.15 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.03 1.45 8.08 -2.39 -0.02 1.44 16 33 H 0.08 2.57 8.08 -2.39 -0.02 2.55 16 34 H 0.09 2.86 6.05 -2.39 -0.01 2.85 16 35 H 0.03 1.35 7.42 -2.38 -0.02 1.33 16 36 H 0.07 2.41 6.09 -2.39 -0.01 2.39 16 37 H 0.08 2.25 8.07 -2.38 -0.02 2.23 16 38 H 0.05 2.04 6.22 -2.38 -0.01 2.02 16 39 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.02 1.12 6.01 -2.39 -0.01 1.11 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 44 H 0.03 1.09 5.99 -2.39 -0.01 1.08 16 45 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.59 8.08 -2.38 -0.02 1.57 16 47 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 48 H 0.11 3.77 8.06 -2.91 -0.02 3.74 16 49 H 0.14 3.17 6.30 -2.91 -0.02 3.16 16 Total: -1.00 -76.55 383.46 6.23 -70.32 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.93 Total: 29.65 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.70 Total: -12.52 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -1.39 Total: -79.78 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -1.03 Total: -50.80 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -76.55 6.23 -70.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274660160.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.052 kcal (2) G-P(sol) polarization free energy of solvation -76.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds