Wall clock time and date at job start Tue Mar 31 2020 12:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47479 * 2 1 4 4 C 1.53000 * 109.47321 * 294.45247 * 3 2 1 5 5 C 1.53000 * 109.47421 * 174.45430 * 3 2 1 6 6 N 1.46504 * 109.47118 * 54.45185 * 3 2 1 7 7 C 1.46498 * 119.99869 * 238.58688 * 6 3 2 8 8 C 1.50699 * 109.47291 * 269.99975 * 7 6 3 9 9 H 1.08001 * 120.00407 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00285 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99688 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00069 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47189 * 60.00055 * 12 10 8 14 14 H 1.48501 * 109.47087 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47186 * 299.99723 * 12 10 8 16 16 C 1.34774 * 119.99852 * 58.58511 * 6 3 2 17 17 O 1.21583 * 120.00373 * 4.98895 * 16 6 3 18 18 C 1.47606 * 119.99652 * 184.98214 * 16 6 3 19 19 C 1.39756 * 120.08765 * 303.18970 * 18 16 6 20 20 C 1.37682 * 119.90872 * 180.25430 * 19 18 16 21 21 C 1.39020 * 120.08938 * 0.02562 * 20 19 18 22 22 O 1.35703 * 119.91406 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99766 * 0.02562 * 22 21 20 24 24 C 1.38983 * 120.17517 * 0.02562 * 21 20 19 25 25 C 1.37717 * 120.08710 * 359.97438 * 24 21 20 26 26 C 1.50697 * 120.04205 * 180.02562 * 25 24 21 27 27 H 1.09002 * 109.46793 * 59.99809 * 1 2 3 28 28 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46732 * 300.00089 * 1 2 3 30 30 H 1.09002 * 109.47204 * 240.00155 * 2 1 3 31 31 H 1.09003 * 109.47241 * 119.99904 * 2 1 3 32 32 H 1.09000 * 109.47533 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46870 * 300.00376 * 4 3 2 34 34 H 1.09006 * 109.47002 * 59.99686 * 4 3 2 35 35 H 1.08998 * 109.46644 * 305.96445 * 5 3 2 36 36 H 1.08993 * 109.47253 * 65.96593 * 5 3 2 37 37 H 1.09002 * 109.46963 * 185.96922 * 5 3 2 38 38 H 1.09005 * 109.47590 * 30.00107 * 7 6 3 39 39 H 1.09002 * 109.47068 * 149.99927 * 7 6 3 40 40 H 0.96998 * 119.99637 * 179.97438 * 11 10 8 41 41 H 1.08000 * 120.04456 * 0.25878 * 19 18 16 42 42 H 1.08000 * 119.95361 * 180.02562 * 20 19 18 43 43 H 1.08991 * 109.47434 * 300.00231 * 23 22 21 44 44 H 1.09007 * 109.46806 * 60.00239 * 23 22 21 45 45 H 1.09005 * 109.47410 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.95270 * 179.97438 * 24 21 20 47 47 H 1.08994 * 109.47763 * 274.05242 * 26 25 24 48 48 H 1.08999 * 109.47377 * 34.05820 * 26 25 24 49 49 H 1.09009 * 109.47281 * 154.05355 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6472 2.1224 -1.3131 5 6 3.5637 1.4447 0.1394 6 7 1.4458 2.1706 1.1238 7 6 0.6467 3.3734 0.8768 8 6 1.5434 4.5844 0.8938 9 1 2.6026 4.4697 1.0713 10 6 1.0116 5.8391 0.6839 11 7 -0.2782 5.9788 0.4682 12 14 2.1231 7.3402 0.7056 13 1 3.1561 7.2067 -0.3528 14 1 1.3130 8.5596 0.4564 15 1 2.7836 7.4479 2.0312 16 6 1.6341 1.7338 2.3848 17 8 2.3705 0.7900 2.5978 18 6 0.9465 2.4014 3.5075 19 6 1.1178 3.7723 3.7184 20 6 0.4788 4.3902 4.7698 21 6 -0.3354 3.6523 5.6213 22 8 -0.9631 4.2648 6.6569 23 6 -0.7421 5.6683 6.8107 24 6 -0.5074 2.2886 5.4156 25 6 0.1283 1.6631 4.3662 26 6 -0.0594 0.1845 4.1437 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0101 3.1501 -1.3129 33 1 2.0893 1.5806 -2.1493 34 1 0.5616 2.1208 -1.4125 35 1 3.8487 0.8688 1.0198 36 1 4.0104 0.9967 -0.7481 37 1 3.9173 2.4702 0.2459 38 1 0.1617 3.2940 -0.0961 39 1 -0.1115 3.4717 1.6538 40 1 -0.6524 6.8615 0.3209 41 1 1.7504 4.3462 3.0574 42 1 0.6103 5.4496 4.9332 43 1 0.3212 5.8543 6.9614 44 1 -1.0788 6.1895 5.9145 45 1 -1.3008 6.0317 7.6733 46 1 -1.1404 1.7187 6.0796 47 1 0.6573 -0.3683 4.7510 48 1 -1.0724 -0.1001 4.4281 49 1 0.1011 -0.0478 3.0908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276329072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:10 Heat of formation + Delta-G solvation = -55.014707 kcal Electronic energy + Delta-G solvation = -29251.313532 eV Core-core repulsion = 25564.696716 eV Total energy + Delta-G solvation = -3686.616815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.24075 -39.31791 -37.27026 -35.91547 -33.78769 -32.14633 -31.87860 -30.33369 -29.59984 -27.76033 -27.33154 -26.36051 -26.20629 -23.25203 -23.03751 -22.29367 -21.31593 -19.94378 -17.81700 -17.37910 -16.71692 -16.21840 -16.00564 -15.53571 -15.32067 -14.73438 -14.60223 -14.19289 -13.94205 -13.54561 -13.37955 -13.21027 -12.89661 -12.72370 -12.53262 -12.26165 -12.20435 -11.93335 -11.82501 -11.77946 -11.64446 -11.51316 -11.45820 -11.15295 -11.14121 -11.02780 -10.71623 -10.65916 -10.41428 -10.35160 -10.26856 -10.12577 -9.97818 -9.64827 -8.77762 -8.56505 -8.30579 -7.70519 -7.57604 -6.20856 -4.26716 1.65539 1.89616 3.17861 3.24281 3.26682 3.48546 3.50686 3.91835 4.24710 4.35050 5.08364 5.15073 5.20656 5.25633 5.30532 5.39124 5.42220 5.50944 5.53793 5.61421 5.65938 5.76803 5.81103 5.90532 5.98872 6.02369 6.08568 6.20369 6.21229 6.25547 6.28094 6.31809 6.48191 6.53028 6.60901 6.63381 6.68843 6.74561 6.89139 6.93778 6.95497 7.01750 7.07365 7.19838 7.30218 7.65252 7.72062 7.76031 8.06548 8.42414 8.79152 9.10327 9.38214 10.84622 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.007146 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.425714 B = 3917.424181 C = 6157.524743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.158 4.158 6 N -0.578 5.578 7 C 0.231 3.769 8 C -0.534 4.534 9 H 0.061 0.939 10 C 0.070 3.930 11 N -0.883 5.883 12 Si 0.887 3.113 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.568 3.432 17 O -0.564 6.564 18 C -0.155 4.155 19 C -0.018 4.018 20 C -0.219 4.219 21 C 0.137 3.863 22 O -0.322 6.322 23 C 0.028 3.972 24 C -0.172 4.172 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.161 0.839 42 H 0.125 0.875 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.126 0.874 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 -5.073 4.803 7.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.096 3.904 4 C -0.207 4.207 5 C -0.216 4.216 6 N -0.308 5.308 7 C 0.111 3.889 8 C -0.572 4.572 9 H 0.079 0.921 10 C -0.134 4.134 11 N -0.520 5.520 12 Si 0.714 3.286 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.201 1.201 16 C 0.357 3.643 17 O -0.446 6.446 18 C -0.159 4.159 19 C -0.036 4.036 20 C -0.238 4.238 21 C 0.092 3.908 22 O -0.235 6.235 23 C -0.068 4.068 24 C -0.191 4.191 25 C -0.013 4.013 26 C -0.167 4.167 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.178 0.822 42 H 0.143 0.857 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.613 -5.476 4.967 7.419 hybrid contribution 0.527 1.564 -0.171 1.659 sum -0.085 -3.913 4.796 6.190 Atomic orbital electron populations 1.21743 0.96081 1.00359 1.02191 1.21925 0.96040 0.96692 1.02438 1.20176 0.92748 0.90765 0.86752 1.22125 1.01857 1.02169 0.94559 1.22193 0.95018 1.02467 1.01918 1.48278 1.50655 1.27865 1.04038 1.19551 0.90839 0.80099 0.98441 1.21411 0.94787 0.91114 1.49920 0.92107 1.24901 0.94902 0.98729 0.94902 1.69918 1.10988 1.23878 1.47228 0.86734 0.80715 0.82251 0.78896 1.20071 1.21172 1.20068 1.18061 0.80868 0.82562 0.82827 1.90621 1.39033 1.30056 1.84898 1.19694 1.03202 0.94419 0.98538 1.21866 0.95255 0.92845 0.93603 1.21140 1.03483 1.00205 0.98954 1.19169 0.92056 0.92269 0.87284 1.85953 1.67417 1.23489 1.46643 1.23024 1.01730 0.79510 1.02495 1.19947 1.06311 0.91672 1.01160 1.19541 0.93691 0.95604 0.92415 1.20784 1.01382 0.91315 1.03175 0.92807 0.93714 0.92609 0.92209 0.90299 0.90194 0.93030 0.91991 0.90897 0.93218 0.92394 0.93924 0.94318 0.92508 0.82178 0.85668 0.92727 0.92351 0.88702 0.85598 0.90738 0.91912 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.45 37.16 0.35 -1.94 16 2 C -0.13 -2.16 4.65 -26.73 -0.12 -2.29 16 3 C 0.18 3.26 0.73 -131.82 -0.10 3.16 16 4 C -0.15 -2.60 6.98 37.16 0.26 -2.34 16 5 C -0.16 -2.80 8.32 37.16 0.31 -2.49 16 6 N -0.58 -11.76 1.49 -161.37 -0.24 -12.01 16 7 C 0.23 5.25 4.07 -5.20 -0.02 5.22 16 8 C -0.53 -12.89 5.85 -34.44 -0.20 -13.09 16 9 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 10 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 11 N -0.88 -23.19 13.29 55.43 0.74 -22.45 16 12 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.57 11.85 5.04 -12.44 -0.06 11.79 16 17 O -0.56 -12.25 12.52 5.29 0.07 -12.19 16 18 C -0.16 -3.15 4.61 -104.96 -0.48 -3.63 16 19 C -0.02 -0.36 7.80 -39.22 -0.31 -0.67 16 20 C -0.22 -4.03 9.01 -39.49 -0.36 -4.39 16 21 C 0.14 2.39 6.70 -39.02 -0.26 2.13 16 22 O -0.32 -5.00 10.48 -18.81 -0.20 -5.20 16 23 C 0.03 0.33 9.81 101.05 0.99 1.32 16 24 C -0.17 -2.92 9.64 -39.50 -0.38 -3.30 16 25 C -0.01 -0.21 5.91 -104.26 -0.62 -0.82 16 26 C -0.11 -1.71 9.28 36.00 0.33 -1.38 16 27 H 0.05 0.82 6.58 -51.93 -0.34 0.48 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.97 6.87 -51.93 -0.36 0.62 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.08 1.41 6.41 -51.93 -0.33 1.08 16 32 H 0.08 1.56 7.13 -51.93 -0.37 1.19 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 1.09 5.38 -51.93 -0.28 0.81 16 35 H 0.07 1.39 6.30 -51.93 -0.33 1.06 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.04 1.02 5.74 -51.93 -0.30 0.72 16 39 H 0.04 0.96 6.15 -51.93 -0.32 0.64 16 40 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 41 H 0.16 3.55 5.23 -52.49 -0.27 3.28 16 42 H 0.13 2.09 6.28 -52.49 -0.33 1.76 16 43 H 0.05 0.60 7.65 -51.93 -0.40 0.20 16 44 H 0.06 0.70 7.65 -51.92 -0.40 0.31 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 47 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 48 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 49 H 0.07 1.18 6.38 -51.92 -0.33 0.85 16 LS Contribution 374.92 15.07 5.65 5.65 Total: -1.00 -27.15 374.92 -7.47 -34.62 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.70 Total: 8.08 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.76 Total: -11.08 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.50 Total: -34.46 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.13 Total: -17.39 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -27.15 -7.47 -34.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276329072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.392 kcal (2) G-P(sol) polarization free energy of solvation -27.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds