Wall clock time and date at job start Tue Mar 31 2020 12:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47479 * 2 1 4 4 C 1.53000 * 109.47321 * 294.45247 * 3 2 1 5 5 C 1.53000 * 109.47421 * 174.45430 * 3 2 1 6 6 N 1.46504 * 109.47118 * 54.45185 * 3 2 1 7 7 C 1.46498 * 119.99869 * 238.58688 * 6 3 2 8 8 C 1.50699 * 109.47291 * 269.99975 * 7 6 3 9 9 H 1.08001 * 120.00407 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00285 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99688 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00069 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47189 * 60.00055 * 12 10 8 14 14 H 1.48501 * 109.47087 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47186 * 299.99723 * 12 10 8 16 16 C 1.34774 * 119.99852 * 58.58511 * 6 3 2 17 17 O 1.21583 * 120.00373 * 4.98895 * 16 6 3 18 18 C 1.47606 * 119.99652 * 184.98214 * 16 6 3 19 19 C 1.39756 * 120.08765 * 303.18970 * 18 16 6 20 20 C 1.37682 * 119.90872 * 180.25430 * 19 18 16 21 21 C 1.39020 * 120.08938 * 0.02562 * 20 19 18 22 22 O 1.35703 * 119.91406 * 179.97438 * 21 20 19 23 23 C 1.42903 * 116.99766 * 0.02562 * 22 21 20 24 24 C 1.38983 * 120.17517 * 0.02562 * 21 20 19 25 25 C 1.37717 * 120.08710 * 359.97438 * 24 21 20 26 26 C 1.50697 * 120.04205 * 180.02562 * 25 24 21 27 27 H 1.09002 * 109.46793 * 59.99809 * 1 2 3 28 28 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46732 * 300.00089 * 1 2 3 30 30 H 1.09002 * 109.47204 * 240.00155 * 2 1 3 31 31 H 1.09003 * 109.47241 * 119.99904 * 2 1 3 32 32 H 1.09000 * 109.47533 * 179.97438 * 4 3 2 33 33 H 1.09004 * 109.46870 * 300.00376 * 4 3 2 34 34 H 1.09006 * 109.47002 * 59.99686 * 4 3 2 35 35 H 1.08998 * 109.46644 * 305.96445 * 5 3 2 36 36 H 1.08993 * 109.47253 * 65.96593 * 5 3 2 37 37 H 1.09002 * 109.46963 * 185.96922 * 5 3 2 38 38 H 1.09005 * 109.47590 * 30.00107 * 7 6 3 39 39 H 1.09002 * 109.47068 * 149.99927 * 7 6 3 40 40 H 0.96998 * 119.99637 * 179.97438 * 11 10 8 41 41 H 1.08000 * 120.04456 * 0.25878 * 19 18 16 42 42 H 1.08000 * 119.95361 * 180.02562 * 20 19 18 43 43 H 1.08991 * 109.47434 * 300.00231 * 23 22 21 44 44 H 1.09007 * 109.46806 * 60.00239 * 23 22 21 45 45 H 1.09005 * 109.47410 * 179.97438 * 23 22 21 46 46 H 1.07999 * 119.95270 * 179.97438 * 24 21 20 47 47 H 1.08994 * 109.47763 * 274.05242 * 26 25 24 48 48 H 1.08999 * 109.47377 * 34.05820 * 26 25 24 49 49 H 1.09009 * 109.47281 * 154.05355 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6472 2.1224 -1.3131 5 6 3.5637 1.4447 0.1394 6 7 1.4458 2.1706 1.1238 7 6 0.6467 3.3734 0.8768 8 6 1.5434 4.5844 0.8938 9 1 2.6026 4.4697 1.0713 10 6 1.0116 5.8391 0.6839 11 7 -0.2782 5.9788 0.4682 12 14 2.1231 7.3402 0.7056 13 1 3.1561 7.2067 -0.3528 14 1 1.3130 8.5596 0.4564 15 1 2.7836 7.4479 2.0312 16 6 1.6341 1.7338 2.3848 17 8 2.3705 0.7900 2.5978 18 6 0.9465 2.4014 3.5075 19 6 1.1178 3.7723 3.7184 20 6 0.4788 4.3902 4.7698 21 6 -0.3354 3.6523 5.6213 22 8 -0.9631 4.2648 6.6569 23 6 -0.7421 5.6683 6.8107 24 6 -0.5074 2.2886 5.4156 25 6 0.1283 1.6631 4.3662 26 6 -0.0594 0.1845 4.1437 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0101 3.1501 -1.3129 33 1 2.0893 1.5806 -2.1493 34 1 0.5616 2.1208 -1.4125 35 1 3.8487 0.8688 1.0198 36 1 4.0104 0.9967 -0.7481 37 1 3.9173 2.4702 0.2459 38 1 0.1617 3.2940 -0.0961 39 1 -0.1115 3.4717 1.6538 40 1 -0.6524 6.8615 0.3209 41 1 1.7504 4.3462 3.0574 42 1 0.6103 5.4496 4.9332 43 1 0.3212 5.8543 6.9614 44 1 -1.0788 6.1895 5.9145 45 1 -1.3008 6.0317 7.6733 46 1 -1.1404 1.7187 6.0796 47 1 0.6573 -0.3683 4.7510 48 1 -1.0724 -0.1001 4.4281 49 1 0.1011 -0.0478 3.0908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276329072.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:09 Heat of formation + Delta-G solvation = -67.363066 kcal Electronic energy + Delta-G solvation = -29251.848997 eV Core-core repulsion = 25564.696716 eV Total energy + Delta-G solvation = -3687.152280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.73721 -40.69440 -38.62496 -37.47933 -35.51090 -33.83758 -33.34112 -31.68299 -30.97485 -29.46803 -28.57203 -27.92082 -27.45572 -24.80137 -24.62436 -23.80958 -22.74222 -21.35542 -19.35736 -18.73228 -18.54417 -17.81576 -17.42652 -16.91309 -16.63828 -16.39301 -16.18209 -15.65345 -15.39977 -14.90864 -14.77237 -14.52193 -14.26677 -14.22887 -14.17498 -13.80526 -13.64352 -13.41021 -13.31525 -13.05223 -12.90925 -12.88884 -12.80699 -12.75410 -12.70431 -12.57179 -12.28859 -12.18118 -11.98927 -11.77964 -11.72496 -11.63608 -11.52049 -11.33881 -10.56576 -10.32031 -9.72584 -9.30543 -9.07477 -8.14429 -6.25347 0.20840 0.45186 1.39505 1.42233 1.47987 1.90390 2.30152 2.34437 2.46540 2.84072 3.14362 3.73193 3.88701 3.92157 4.03476 4.11680 4.19656 4.23987 4.33631 4.37428 4.44066 4.45381 4.58130 4.66573 4.70920 4.72389 4.78335 4.84092 4.84984 4.85167 4.97668 4.99063 5.06384 5.08696 5.18832 5.20916 5.27015 5.28810 5.31725 5.40506 5.48040 5.51093 5.59204 5.64465 5.73188 5.76845 6.06290 6.15251 6.40989 6.65836 6.91844 7.37961 7.51367 8.89960 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009244 B = 0.007146 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3028.425714 B = 3917.424181 C = 6157.524743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C 0.168 3.832 4 C -0.141 4.141 5 C -0.150 4.150 6 N -0.578 5.578 7 C 0.253 3.747 8 C -0.527 4.527 9 H 0.049 0.951 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.938 3.062 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.567 3.433 17 O -0.577 6.577 18 C -0.183 4.183 19 C -0.036 4.036 20 C -0.228 4.228 21 C 0.142 3.858 22 O -0.324 6.324 23 C 0.018 3.982 24 C -0.171 4.171 25 C -0.016 4.016 26 C -0.105 4.105 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.030 0.970 39 H 0.015 0.985 40 H 0.265 0.735 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.129 0.871 46 H 0.155 0.845 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -5.781 5.349 7.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.163 4.163 3 C 0.084 3.916 4 C -0.198 4.198 5 C -0.208 4.208 6 N -0.308 5.308 7 C 0.132 3.868 8 C -0.565 4.565 9 H 0.068 0.932 10 C -0.169 4.169 11 N -0.551 5.551 12 Si 0.764 3.236 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.196 1.196 16 C 0.356 3.644 17 O -0.460 6.460 18 C -0.186 4.186 19 C -0.054 4.054 20 C -0.246 4.246 21 C 0.096 3.904 22 O -0.237 6.237 23 C -0.076 4.076 24 C -0.189 4.189 25 C -0.017 4.017 26 C -0.161 4.161 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.033 0.967 40 H 0.074 0.926 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.147 0.853 46 H 0.173 0.827 47 H 0.101 0.899 48 H 0.110 0.890 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.925 -6.186 5.513 8.338 hybrid contribution 0.616 1.786 -0.269 1.908 sum -0.309 -4.400 5.244 6.853 Atomic orbital electron populations 1.21696 0.95628 1.01496 1.01070 1.21853 0.96360 0.95084 1.02973 1.20499 0.92957 0.91887 0.86239 1.22035 1.01540 1.00919 0.95337 1.22111 0.94895 1.01117 1.02666 1.48249 1.50407 1.27300 1.04815 1.19097 0.90257 0.80763 0.96664 1.21445 0.94231 0.91838 1.48992 0.93245 1.25451 0.95815 1.00860 0.94749 1.70008 1.12261 1.24289 1.48531 0.85914 0.79214 0.79555 0.78901 1.19991 1.20936 1.19616 1.18210 0.80658 0.82381 0.83103 1.90595 1.39601 1.30661 1.85105 1.19829 1.04749 0.94672 0.99381 1.21656 0.96167 0.93126 0.94491 1.21249 1.03655 1.00932 0.98779 1.19269 0.91290 0.92617 0.87240 1.85960 1.66874 1.25402 1.45512 1.23346 1.03006 0.77510 1.03752 1.20276 1.05914 0.91794 1.00930 1.19860 0.92895 0.96819 0.92083 1.20792 1.03353 0.89685 1.02291 0.92518 0.91428 0.95093 0.89396 0.91872 0.92909 0.89746 0.92608 0.92418 0.90143 0.94433 0.95171 0.96663 0.92571 0.84679 0.84555 0.91923 0.92828 0.85285 0.82741 0.89930 0.89009 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 9.45 71.98 0.68 -3.61 16 2 C -0.12 -3.90 4.65 30.59 0.14 -3.76 16 3 C 0.17 6.05 0.73 3.60 0.00 6.05 16 4 C -0.14 -4.82 6.98 71.98 0.50 -4.31 16 5 C -0.15 -5.27 8.32 71.98 0.60 -4.67 16 6 N -0.58 -24.22 1.49 -782.71 -1.17 -25.39 16 7 C 0.25 11.98 4.07 85.63 0.35 12.33 16 8 C -0.53 -26.33 5.85 25.60 0.15 -26.18 16 9 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 10 C 0.03 1.64 5.46 84.65 0.46 2.10 16 11 N -0.91 -48.96 13.29 21.45 0.28 -48.67 16 12 Si 0.94 40.72 29.54 68.60 2.03 42.75 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 16 C 0.57 24.37 5.04 86.72 0.44 24.80 16 17 O -0.58 -25.55 12.52 -3.98 -0.05 -25.60 16 18 C -0.18 -7.63 4.61 -20.08 -0.09 -7.72 16 19 C -0.04 -1.53 7.80 22.51 0.18 -1.35 16 20 C -0.23 -8.45 9.01 22.33 0.20 -8.24 16 21 C 0.14 4.79 6.70 22.64 0.15 4.94 16 22 O -0.32 -9.45 10.48 -90.23 -0.95 -10.39 16 23 C 0.02 0.39 9.81 113.37 1.11 1.50 16 24 C -0.17 -5.54 9.64 22.33 0.22 -5.33 16 25 C -0.02 -0.56 5.91 -19.63 -0.12 -0.67 16 26 C -0.10 -3.14 9.28 71.23 0.66 -2.48 16 27 H 0.06 1.66 6.58 -2.39 -0.02 1.65 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.03 1.07 6.87 -2.39 -0.02 1.06 16 30 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.06 2.20 6.41 -2.39 -0.02 2.19 16 32 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 33 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.06 1.96 5.38 -2.38 -0.01 1.95 16 35 H 0.06 2.20 6.30 -2.39 -0.02 2.18 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.03 1.50 5.74 -2.38 -0.01 1.49 16 39 H 0.02 0.80 6.15 -2.39 -0.01 0.79 16 40 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 41 H 0.14 6.34 5.23 -2.91 -0.02 6.32 16 42 H 0.14 4.57 6.28 -2.91 -0.02 4.56 16 43 H 0.06 1.26 7.65 -2.39 -0.02 1.25 16 44 H 0.05 1.22 7.65 -2.38 -0.02 1.20 16 45 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 46 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.09 2.18 8.11 -2.39 -0.02 2.16 16 49 H 0.05 1.78 6.38 -2.38 -0.02 1.76 16 Total: -1.00 -59.84 374.92 6.72 -53.12 By element: Atomic # 1 Polarization: 29.84 SS G_CDS: 0.94 Total: 30.79 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 5.63 Total: -16.60 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -0.88 Total: -74.06 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -1.00 Total: -35.99 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -59.84 6.72 -53.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276329072.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.247 kcal (2) G-P(sol) polarization free energy of solvation -59.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds