Wall clock time and date at job start Tue Mar 31 2020 12:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47349 * 2 1 4 4 C 1.53008 * 109.46814 * 240.00197 * 2 1 3 5 5 C 1.53001 * 109.47402 * 120.00242 * 2 1 3 6 6 H 1.08995 * 109.54095 * 180.10819 * 5 2 1 7 7 C 1.53096 * 109.50452 * 59.99635 * 5 2 1 8 8 N 1.47012 * 109.25961 * 183.21870 * 7 5 2 9 9 C 1.46894 * 111.00253 * 182.39412 * 8 7 5 10 10 C 1.50706 * 109.47133 * 169.99807 * 9 8 7 11 11 C 1.38304 * 119.92743 * 90.00030 * 10 9 8 12 12 C 1.38097 * 120.06541 * 179.97438 * 11 10 9 13 13 C 1.38883 * 119.93296 * 0.02562 * 12 11 10 14 14 O 1.35755 * 120.06887 * 180.02562 * 13 12 11 15 15 C 1.34833 * 117.00051 * 5.51954 * 14 13 12 16 16 H 1.08002 * 119.99709 * 354.65284 * 15 14 13 17 17 C 1.38650 * 119.99870 * 174.91769 * 15 14 13 18 18 N 1.31563 * 120.00078 * 359.72962 * 17 15 14 19 19 Si 1.86803 * 119.99964 * 179.72513 * 17 15 14 20 20 H 1.48504 * 109.46905 * 60.00583 * 19 17 15 21 21 H 1.48500 * 109.47113 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47097 * 300.00461 * 19 17 15 23 23 C 1.38875 * 119.86251 * 0.26747 * 13 12 11 24 24 C 1.38104 * 119.92568 * 359.43312 * 23 13 12 25 25 C 1.47013 * 110.75165 * 58.61405 * 8 7 5 26 26 C 1.53097 * 109.26066 * 301.38565 * 25 8 7 27 27 O 1.43015 * 109.50421 * 300.21938 * 5 2 1 28 28 H 1.09003 * 109.46937 * 299.99828 * 1 2 3 29 29 H 1.09007 * 109.47614 * 59.99760 * 1 2 3 30 30 H 1.08994 * 109.47432 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47808 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47483 * 300.00666 * 3 2 1 33 33 H 1.09003 * 109.46960 * 60.00187 * 3 2 1 34 34 H 1.08998 * 109.46906 * 299.99677 * 4 2 1 35 35 H 1.08997 * 109.46791 * 60.00158 * 4 2 1 36 36 H 1.09005 * 109.46708 * 179.97438 * 4 2 1 37 37 H 1.09007 * 109.50725 * 63.28483 * 7 5 2 38 38 H 1.09000 * 109.50951 * 303.15254 * 7 5 2 39 39 H 1.09001 * 109.47555 * 49.99895 * 9 8 7 40 40 H 1.08999 * 109.47501 * 289.99555 * 9 8 7 41 41 H 1.07999 * 119.96893 * 0.02562 * 11 10 9 42 42 H 1.08004 * 120.03291 * 180.02562 * 12 11 10 43 43 H 0.96998 * 120.00013 * 179.97438 * 18 17 15 44 44 H 1.07997 * 120.03846 * 179.72323 * 23 13 12 45 45 H 1.08002 * 119.96476 * 180.31422 * 24 23 13 46 46 H 1.08998 * 109.50294 * 61.32404 * 25 8 7 47 47 H 1.09006 * 109.50462 * 181.45176 * 25 8 7 48 48 H 1.08992 * 109.50698 * 296.91628 * 26 25 8 49 49 H 1.08996 * 109.54247 * 176.80358 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7203 1.2513 7 6 1.5301 -2.1648 1.2500 8 7 1.9585 -2.8298 2.4891 9 6 1.5372 -4.2369 2.5043 10 6 2.1962 -4.9462 3.6593 11 6 1.5708 -4.9858 4.8922 12 6 2.1718 -5.6354 5.9523 13 6 3.4058 -6.2488 5.7796 14 8 3.9988 -6.8886 6.8197 15 6 3.2880 -6.9912 7.9608 16 1 2.3299 -6.5001 8.0462 17 6 3.7897 -7.7226 9.0266 18 7 4.9567 -8.3209 8.9225 19 14 2.8084 -7.8583 10.6104 20 1 1.4958 -8.4922 10.3265 21 1 3.5582 -8.6878 11.5876 22 1 2.5915 -6.5025 11.1760 23 6 4.0340 -6.2021 4.5419 24 6 3.4249 -5.5562 3.4840 25 6 1.4481 -2.1142 3.6676 26 6 1.9588 -0.6712 3.6426 27 8 1.5595 -0.0507 2.4174 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2493 35 1 1.6765 -0.2073 -2.1392 36 1 3.1299 -0.7208 -1.2496 37 1 1.9403 -2.6963 0.3912 38 1 0.4415 -2.1664 1.1937 39 1 1.8309 -4.7143 1.5695 40 1 0.4542 -4.2908 2.6151 41 1 0.6110 -4.5089 5.0258 42 1 1.6827 -5.6663 6.9148 43 1 5.3078 -8.8322 9.6683 44 1 4.9956 -6.6743 4.4056 45 1 3.9106 -5.5239 2.5199 46 1 0.3582 -2.1150 3.6499 47 1 1.7984 -2.6087 4.5736 48 1 3.0464 -0.6688 3.7142 49 1 1.5374 -0.1206 4.4836 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279689003.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:09 Heat of formation + Delta-G solvation = -70.478038 kcal Electronic energy + Delta-G solvation = -27149.553790 eV Core-core repulsion = 23462.266434 eV Total energy + Delta-G solvation = -3687.287356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.21866 -40.64099 -38.70242 -37.36849 -36.34500 -34.29693 -31.88804 -31.72537 -31.23612 -28.66737 -28.15375 -27.85136 -27.23433 -25.00827 -24.96941 -23.57397 -22.11397 -21.41209 -19.84800 -19.75657 -18.81036 -17.40290 -17.22574 -16.61977 -16.49582 -16.33467 -16.01529 -15.76896 -15.53994 -15.49845 -15.10420 -14.85090 -14.64546 -14.52200 -14.39805 -14.29428 -13.92553 -13.60142 -13.18934 -13.03940 -12.97849 -12.76539 -12.67629 -12.57913 -12.41403 -12.31988 -12.25133 -12.15177 -12.09087 -11.91155 -11.59765 -11.50043 -11.18088 -11.11614 -10.78786 -10.52399 -9.76261 -9.32835 -8.89169 -8.47082 -6.15348 0.60150 0.67098 1.34359 1.44913 1.50627 2.17526 2.67741 2.79256 2.98878 3.26598 3.52947 3.71529 3.85149 3.94454 4.02349 4.08283 4.08895 4.17374 4.21045 4.23560 4.35917 4.40932 4.50575 4.60348 4.61088 4.66421 4.72840 4.79502 4.81258 4.82474 4.88307 4.94372 4.95414 5.02244 5.08462 5.09486 5.12992 5.14639 5.21516 5.30109 5.35584 5.50502 5.54600 5.57312 5.71352 5.78219 6.01053 6.02782 6.06339 6.23483 6.27692 6.97494 7.78723 8.75943 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.028442 B = 0.002412 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.223911 B =11607.682003 C =12001.578351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.058 4.058 3 C -0.135 4.135 4 C -0.141 4.141 5 C 0.104 3.896 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.542 5.542 9 C 0.117 3.883 10 C -0.153 4.153 11 C -0.061 4.061 12 C -0.242 4.242 13 C 0.115 3.885 14 O -0.233 6.233 15 C -0.414 4.414 16 H 0.101 0.899 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.257 1.257 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.205 4.205 24 C -0.046 4.046 25 C 0.019 3.981 26 C 0.066 3.934 27 O -0.388 6.388 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.046 0.954 39 H 0.095 0.905 40 H 0.045 0.955 41 H 0.132 0.868 42 H 0.117 0.883 43 H 0.273 0.727 44 H 0.111 0.889 45 H 0.145 0.855 46 H 0.041 0.959 47 H 0.078 0.922 48 H 0.050 0.950 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 16.807 -18.829 27.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.199 4.199 5 C 0.046 3.954 6 H 0.072 0.928 7 C -0.103 4.103 8 N -0.267 5.267 9 C -0.010 4.010 10 C -0.154 4.154 11 C -0.079 4.079 12 C -0.261 4.261 13 C 0.064 3.936 14 O -0.139 6.139 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.196 1.196 22 H -0.182 1.182 23 C -0.225 4.225 24 C -0.065 4.065 25 C -0.109 4.109 26 C -0.011 4.011 27 O -0.307 6.307 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.064 0.936 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.150 0.850 42 H 0.135 0.865 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.163 0.837 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.068 0.932 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.492 16.760 -18.695 26.842 hybrid contribution -0.616 -0.727 1.301 1.612 sum -10.107 16.033 -17.394 25.725 Atomic orbital electron populations 1.21834 0.93890 1.01806 1.01818 1.20561 0.96531 0.96000 0.92796 1.21771 1.00696 0.94823 1.01938 1.21914 1.01358 1.00555 0.96031 1.22230 0.97284 0.90187 0.85741 0.92754 1.22952 0.99088 0.95390 0.92829 1.62201 1.60231 1.01967 1.02338 1.20814 0.96662 0.86942 0.96575 1.19529 0.96728 1.03910 0.95272 1.20884 0.98997 0.96324 0.91717 1.21200 0.97457 1.06507 1.00939 1.19939 0.92624 0.92193 0.88811 1.83946 1.42314 1.67781 1.19898 1.21765 1.03985 1.33766 0.89447 0.88179 1.26587 0.97711 0.94915 1.02854 1.70181 1.19392 1.32595 1.33738 0.84663 0.77574 0.79334 0.74741 1.18172 1.19624 1.18167 1.20457 1.02242 1.08386 0.91376 1.20819 0.94018 0.94099 0.97527 1.22781 0.97820 0.95448 0.94891 1.22653 0.99332 0.91855 0.87231 1.87935 1.76032 1.52719 1.13982 0.93329 0.91648 0.92580 0.92900 0.91509 0.93166 0.91806 0.90962 0.92285 0.88378 0.93556 0.88663 0.93682 0.85030 0.86489 0.91847 0.87044 0.83734 0.94038 0.90391 0.93212 0.87279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.98 71.98 0.57 -1.34 16 2 C -0.06 -0.84 0.63 -52.18 -0.03 -0.87 16 3 C -0.13 -1.93 8.33 71.98 0.60 -1.33 16 4 C -0.14 -1.57 8.12 71.98 0.58 -0.98 16 5 C 0.10 1.93 2.07 30.63 0.06 1.99 16 6 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 7 C 0.02 0.45 4.21 86.31 0.36 0.82 16 8 N -0.54 -12.36 4.72 -899.78 -4.24 -16.61 16 9 C 0.12 2.69 5.11 85.56 0.44 3.12 16 10 C -0.15 -4.71 4.90 -19.83 -0.10 -4.81 16 11 C -0.06 -2.07 7.92 22.25 0.18 -1.89 16 12 C -0.24 -10.50 9.17 22.39 0.21 -10.30 16 13 C 0.11 5.75 6.65 22.58 0.15 5.90 16 14 O -0.23 -14.14 9.76 -22.82 -0.22 -14.36 16 15 C -0.41 -24.23 9.49 67.92 0.64 -23.59 16 16 H 0.10 5.37 5.20 -2.91 -0.02 5.36 16 17 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 18 N -0.92 -56.91 13.67 21.61 0.30 -56.62 16 19 Si 1.02 43.00 29.55 68.60 2.03 45.03 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 22 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 23 C -0.21 -8.81 9.99 22.39 0.22 -8.59 16 24 C -0.05 -1.55 9.69 22.25 0.22 -1.34 16 25 C 0.02 0.44 5.27 86.31 0.46 0.89 16 26 C 0.07 1.43 7.01 72.01 0.50 1.94 16 27 O -0.39 -8.48 9.12 -148.98 -1.36 -9.84 16 28 H 0.05 0.83 7.68 -2.39 -0.02 0.81 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.06 0.77 6.36 -2.39 -0.02 0.76 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.05 0.85 7.69 -2.39 -0.02 0.83 16 34 H 0.06 0.66 6.51 -2.39 -0.02 0.64 16 35 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.10 1.52 6.56 -2.38 -0.02 1.51 16 38 H 0.05 0.84 6.27 -2.39 -0.01 0.83 16 39 H 0.10 1.87 7.98 -2.39 -0.02 1.85 16 40 H 0.05 0.97 8.06 -2.39 -0.02 0.95 16 41 H 0.13 3.70 8.00 -2.91 -0.02 3.68 16 42 H 0.12 5.18 5.64 -2.91 -0.02 5.17 16 43 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 44 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.08 2.09 6.01 -2.38 -0.01 2.07 16 48 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -69.54 379.85 2.95 -66.58 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.92 Total: 27.04 kcal Atomic # 6 Polarization: -46.77 SS G_CDS: 5.53 Total: -41.24 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -3.95 Total: -73.22 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -1.58 Total: -24.20 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.54 2.95 -66.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279689003.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.895 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds