Wall clock time and date at job start Tue Mar 31 2020 12:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99813 * 2 1 4 4 C 1.52998 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47095 * 60.00539 * 4 3 2 6 6 C 1.52993 * 109.47500 * 300.00103 * 4 3 2 7 7 C 1.53000 * 109.47085 * 179.97438 * 4 3 2 8 8 C 1.53005 * 109.47319 * 180.02562 * 7 4 3 9 9 C 1.52990 * 109.47350 * 180.02562 * 8 7 4 10 10 N 1.46498 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.34782 * 120.00041 * 179.97438 * 10 9 8 12 12 O 1.21546 * 119.99859 * 359.97438 * 11 10 9 13 13 C 1.47891 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.39923 * 120.02411 * 359.72358 * 13 11 10 15 15 C 1.38333 * 120.35611 * 179.74075 * 14 13 11 16 16 C 1.37755 * 120.40861 * 0.56181 * 15 14 13 17 17 C 1.40744 * 120.04191 * 359.69635 * 16 15 14 18 18 C 1.41438 * 120.17967 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99591 * 24.43812 * 18 17 16 20 20 C 1.39935 * 120.00120 * 204.44034 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.87513 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.88047 * 20 18 17 23 23 H 1.48502 * 109.47323 * 59.99884 * 22 20 18 24 24 H 1.48496 * 109.47340 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46963 * 299.99731 * 22 20 18 26 26 C 1.38991 * 120.02263 * 179.97438 * 13 11 10 27 27 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99802 * 1 2 3 29 29 H 1.09003 * 109.46867 * 59.99948 * 1 2 3 30 30 H 1.09004 * 109.47248 * 60.00010 * 3 2 1 31 31 H 1.09004 * 109.47191 * 300.00195 * 3 2 1 32 32 H 1.09002 * 109.47195 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46267 * 299.99613 * 5 4 3 34 34 H 1.08994 * 109.47177 * 59.99656 * 5 4 3 35 35 H 1.09006 * 109.47099 * 300.00391 * 6 4 3 36 36 H 1.09005 * 109.47321 * 59.99494 * 6 4 3 37 37 H 1.09002 * 109.47696 * 179.97438 * 6 4 3 38 38 H 1.09004 * 109.47074 * 60.00365 * 7 4 3 39 39 H 1.08996 * 109.47865 * 300.00197 * 7 4 3 40 40 H 1.09004 * 109.46815 * 60.00126 * 8 7 4 41 41 H 1.09006 * 109.46845 * 300.00750 * 8 7 4 42 42 H 1.09006 * 109.47437 * 299.99993 * 9 8 7 43 43 H 1.09004 * 109.47381 * 60.00078 * 9 8 7 44 44 H 0.97000 * 120.00134 * 0.02562 * 10 9 8 45 45 H 1.08001 * 119.81786 * 0.02562 * 14 13 11 46 46 H 1.07999 * 119.78886 * 180.28122 * 15 14 13 47 47 H 1.07995 * 119.97665 * 179.72109 * 16 15 14 48 48 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 49 49 H 1.07997 * 120.20608 * 359.95800 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2484 6 6 3.9865 0.4256 1.2501 7 6 4.1577 2.5824 0.0000 8 6 5.6830 2.4617 0.0000 9 6 6.3052 3.8593 0.0000 10 7 7.7656 3.7437 -0.0006 11 6 8.5296 4.8541 -0.0012 12 8 8.0068 5.9514 -0.0018 13 6 10.0039 4.7374 -0.0013 14 6 10.6062 3.4744 0.0052 15 6 11.9845 3.3572 -0.0003 16 6 12.7800 4.4819 -0.0004 17 6 12.1921 5.7607 -0.0015 18 6 13.0060 6.9174 -0.0022 19 1 14.0133 6.8686 -0.3889 20 6 12.5063 8.1249 0.4982 21 7 11.4515 8.1257 1.2720 22 14 13.3454 9.7356 0.0611 23 1 13.3236 9.9213 -1.4121 24 1 12.6270 10.8605 0.7120 25 1 14.7522 9.7055 0.5355 26 6 10.7921 5.8821 -0.0025 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 5.0740 0.3388 -1.2477 33 1 3.5441 -0.5706 -1.2483 34 1 3.6661 0.9660 -2.1385 35 1 3.6644 0.9667 2.1399 36 1 3.5431 -0.5702 1.2502 37 1 5.0731 0.3392 1.2504 38 1 3.8358 3.1239 0.8896 39 1 3.8364 3.1229 -0.8904 40 1 6.0046 1.9204 -0.8898 41 1 6.0046 1.9210 0.8902 42 1 5.9836 4.4003 -0.8900 43 1 5.9836 4.4003 0.8900 44 1 8.1828 2.8680 -0.0013 45 1 9.9916 2.5864 0.0097 46 1 12.4397 2.3778 0.0002 47 1 13.8553 4.3822 -0.0001 48 1 11.1049 8.9628 1.6186 49 1 10.3316 6.8590 -0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000288402956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:17 Heat of formation + Delta-G solvation = -93.065181 kcal Electronic energy + Delta-G solvation = -25933.250614 eV Core-core repulsion = 22244.983806 eV Total energy + Delta-G solvation = -3688.266808 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.41793 -38.98690 -37.18760 -36.76349 -34.56027 -33.71384 -31.40020 -29.88210 -29.40871 -27.73911 -27.48016 -26.56764 -25.52436 -25.03124 -22.50757 -21.60313 -20.87092 -19.56796 -18.86530 -17.69002 -16.73258 -16.27014 -16.19105 -15.68090 -15.62381 -15.43551 -15.01166 -14.62211 -14.33113 -14.05169 -13.67252 -13.60499 -13.54048 -13.19153 -12.66257 -12.59156 -12.46994 -12.32446 -12.12853 -11.88665 -11.84878 -11.64698 -11.55480 -11.19393 -11.12809 -11.05924 -10.82674 -10.74504 -10.63305 -10.62097 -10.49142 -10.01822 -9.99037 -9.68626 -9.20080 -8.99260 -8.62002 -7.61714 -7.51141 -6.79288 -4.40629 2.23147 2.83119 3.07944 3.09706 3.17450 3.36414 3.76970 3.89059 3.93109 4.48951 4.49143 4.62220 4.65137 4.89207 4.93068 4.98337 4.98765 5.18818 5.21687 5.28187 5.29553 5.35103 5.56287 5.56440 5.60950 5.64084 5.64605 5.75033 5.77239 5.88327 5.95241 6.01809 6.07391 6.13373 6.23068 6.25612 6.28859 6.73080 6.81589 6.90280 6.99899 7.03500 7.22316 7.39277 7.71398 7.77382 7.93896 8.11835 8.20774 8.51483 8.80993 8.84531 8.98527 10.15424 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.002020 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.882960 B =13854.841501 C =14586.110859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.070 3.930 4 C -0.061 4.061 5 C -0.141 4.141 6 C -0.141 4.141 7 C -0.106 4.106 8 C -0.132 4.132 9 C 0.121 3.879 10 N -0.738 5.738 11 C 0.563 3.437 12 O -0.548 6.548 13 C -0.128 4.128 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.093 4.093 27 H 0.084 0.916 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.285 0.715 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.290 -13.129 -1.717 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.006 4.006 4 C -0.061 4.061 5 C -0.198 4.198 6 C -0.198 4.198 7 C -0.144 4.144 8 C -0.170 4.170 9 C -0.003 4.003 10 N -0.392 5.392 11 C 0.353 3.647 12 O -0.426 6.426 13 C -0.132 4.132 14 C -0.238 4.238 15 C -0.116 4.116 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.489 4.489 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.190 1.190 26 C -0.113 4.113 27 H 0.103 0.897 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.234 0.766 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.096 0.904 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.730 -12.327 -1.559 21.651 hybrid contribution 0.215 0.528 -0.042 0.572 sum -17.516 -11.799 -1.601 21.180 Atomic orbital electron populations 1.22726 0.81323 1.02617 0.99881 1.87869 1.19304 1.28020 1.95368 1.22608 0.93495 0.84467 1.00058 1.20562 0.92490 0.95960 0.97119 1.21865 1.01325 1.00464 0.96113 1.21864 1.01339 1.00464 0.96113 1.21496 0.94796 0.95421 1.02673 1.21887 0.95063 0.96830 1.03199 1.21227 0.80510 0.96600 1.01951 1.45952 1.06044 1.09529 1.77652 1.18850 0.87872 0.83330 0.74613 1.90690 1.75156 1.26752 1.49982 1.19491 0.90263 0.95166 1.08236 1.20340 0.94459 0.94277 1.14762 1.20436 0.93391 0.96869 1.00913 1.21095 0.97786 0.92564 1.11805 1.17602 0.91781 0.92272 0.88755 1.19558 1.00468 0.92878 1.36028 0.90104 1.25966 0.94619 1.01362 0.92654 1.69782 1.19717 1.29804 1.21429 0.86323 0.79985 0.80142 0.80059 1.18723 1.20237 1.18954 1.21641 0.93239 0.97134 0.99271 0.89744 0.94196 0.94209 0.93332 0.93334 0.92150 0.92008 0.92915 0.92899 0.92005 0.92142 0.91401 0.91422 0.90864 0.90851 0.92052 0.92006 0.76626 0.89243 0.88909 0.88628 0.90379 0.84857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.46 9.35 -35.23 -0.33 -3.79 16 3 C 0.07 0.56 4.80 37.16 0.18 0.74 16 4 C -0.06 -0.50 0.63 -154.51 -0.10 -0.60 16 5 C -0.14 -1.16 7.97 37.16 0.30 -0.87 16 6 C -0.14 -1.17 7.98 37.15 0.30 -0.88 16 7 C -0.11 -0.89 4.27 -26.73 -0.11 -1.01 16 8 C -0.13 -1.28 4.62 -26.73 -0.12 -1.41 16 9 C 0.12 1.66 5.67 -4.05 -0.02 1.63 16 10 N -0.74 -12.25 5.51 -61.24 -0.34 -12.59 16 11 C 0.56 12.49 7.77 -12.31 -0.10 12.40 16 12 O -0.55 -13.98 16.33 5.33 0.09 -13.90 16 13 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 14 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 15 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 16 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 17 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 18 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 19 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 20 C 0.07 1.86 5.14 -17.35 -0.09 1.77 16 21 N -0.78 -20.91 10.96 55.55 0.61 -20.30 16 22 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 26 C -0.09 -2.50 8.24 -38.44 -0.32 -2.82 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.06 0.54 7.68 -51.93 -0.40 0.14 16 34 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.55 7.68 -51.93 -0.40 0.15 16 37 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 41 H 0.07 0.69 6.43 -51.93 -0.33 0.35 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.40 5.68 6.49 -40.82 -0.26 5.42 16 45 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 46 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 47 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 48 H 0.29 7.01 8.30 -40.82 -0.34 6.67 16 49 H 0.13 3.89 5.74 -52.49 -0.30 3.59 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -30.52 392.58 -8.84 -39.37 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -8.08 Total: 8.24 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -1.68 Total: -16.80 kcal Atomic # 7 Polarization: -33.16 SS G_CDS: 0.27 Total: -32.89 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.24 Total: -17.69 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.52 -8.84 -39.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288402956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.697 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds