Wall clock time and date at job start Tue Mar 31 2020 12:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99813 * 2 1 4 4 C 1.52998 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47095 * 60.00539 * 4 3 2 6 6 C 1.52993 * 109.47500 * 300.00103 * 4 3 2 7 7 C 1.53000 * 109.47085 * 179.97438 * 4 3 2 8 8 C 1.53005 * 109.47319 * 180.02562 * 7 4 3 9 9 C 1.52990 * 109.47350 * 180.02562 * 8 7 4 10 10 N 1.46498 * 109.47234 * 180.02562 * 9 8 7 11 11 C 1.34782 * 120.00041 * 179.97438 * 10 9 8 12 12 O 1.21546 * 119.99859 * 359.97438 * 11 10 9 13 13 C 1.47891 * 119.99867 * 179.97438 * 11 10 9 14 14 C 1.39923 * 120.02411 * 359.72358 * 13 11 10 15 15 C 1.38333 * 120.35611 * 179.74075 * 14 13 11 16 16 C 1.37755 * 120.40861 * 0.56181 * 15 14 13 17 17 C 1.40744 * 120.04191 * 359.69635 * 16 15 14 18 18 C 1.41438 * 120.17967 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99591 * 24.43812 * 18 17 16 20 20 C 1.39935 * 120.00120 * 204.44034 * 18 17 16 21 21 N 1.30820 * 120.00060 * 17.87513 * 20 18 17 22 22 Si 1.86798 * 119.99804 * 197.88047 * 20 18 17 23 23 H 1.48502 * 109.47323 * 59.99884 * 22 20 18 24 24 H 1.48496 * 109.47340 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46963 * 299.99731 * 22 20 18 26 26 C 1.38991 * 120.02263 * 179.97438 * 13 11 10 27 27 H 1.09003 * 109.46805 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47165 * 299.99802 * 1 2 3 29 29 H 1.09003 * 109.46867 * 59.99948 * 1 2 3 30 30 H 1.09004 * 109.47248 * 60.00010 * 3 2 1 31 31 H 1.09004 * 109.47191 * 300.00195 * 3 2 1 32 32 H 1.09002 * 109.47195 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46267 * 299.99613 * 5 4 3 34 34 H 1.08994 * 109.47177 * 59.99656 * 5 4 3 35 35 H 1.09006 * 109.47099 * 300.00391 * 6 4 3 36 36 H 1.09005 * 109.47321 * 59.99494 * 6 4 3 37 37 H 1.09002 * 109.47696 * 179.97438 * 6 4 3 38 38 H 1.09004 * 109.47074 * 60.00365 * 7 4 3 39 39 H 1.08996 * 109.47865 * 300.00197 * 7 4 3 40 40 H 1.09004 * 109.46815 * 60.00126 * 8 7 4 41 41 H 1.09006 * 109.46845 * 300.00750 * 8 7 4 42 42 H 1.09006 * 109.47437 * 299.99993 * 9 8 7 43 43 H 1.09004 * 109.47381 * 60.00078 * 9 8 7 44 44 H 0.97000 * 120.00134 * 0.02562 * 10 9 8 45 45 H 1.08001 * 119.81786 * 0.02562 * 14 13 11 46 46 H 1.07999 * 119.78886 * 180.28122 * 15 14 13 47 47 H 1.07995 * 119.97665 * 179.72109 * 16 15 14 48 48 H 0.97000 * 119.99984 * 180.02562 * 21 20 18 49 49 H 1.07997 * 120.20608 * 359.95800 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9874 0.4253 -1.2484 6 6 3.9865 0.4256 1.2501 7 6 4.1577 2.5824 0.0000 8 6 5.6830 2.4617 0.0000 9 6 6.3052 3.8593 0.0000 10 7 7.7656 3.7437 -0.0006 11 6 8.5296 4.8541 -0.0012 12 8 8.0068 5.9514 -0.0018 13 6 10.0039 4.7374 -0.0013 14 6 10.6062 3.4744 0.0052 15 6 11.9845 3.3572 -0.0003 16 6 12.7800 4.4819 -0.0004 17 6 12.1921 5.7607 -0.0015 18 6 13.0060 6.9174 -0.0022 19 1 14.0133 6.8686 -0.3889 20 6 12.5063 8.1249 0.4982 21 7 11.4515 8.1257 1.2720 22 14 13.3454 9.7356 0.0611 23 1 13.3236 9.9213 -1.4121 24 1 12.6270 10.8605 0.7120 25 1 14.7522 9.7055 0.5355 26 6 10.7921 5.8821 -0.0025 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 5.0740 0.3388 -1.2477 33 1 3.5441 -0.5706 -1.2483 34 1 3.6661 0.9660 -2.1385 35 1 3.6644 0.9667 2.1399 36 1 3.5431 -0.5702 1.2502 37 1 5.0731 0.3392 1.2504 38 1 3.8358 3.1239 0.8896 39 1 3.8364 3.1229 -0.8904 40 1 6.0046 1.9204 -0.8898 41 1 6.0046 1.9210 0.8902 42 1 5.9836 4.4003 -0.8900 43 1 5.9836 4.4003 0.8900 44 1 8.1828 2.8680 -0.0013 45 1 9.9916 2.5864 0.0097 46 1 12.4397 2.3778 0.0002 47 1 13.8553 4.3822 -0.0001 48 1 11.1049 8.9628 1.6186 49 1 10.3316 6.8590 -0.0041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288402956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:16 Heat of formation + Delta-G solvation = -110.733481 kcal Electronic energy + Delta-G solvation = -25934.016769 eV Core-core repulsion = 22244.983806 eV Total energy + Delta-G solvation = -3689.032963 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.90887 -39.85069 -38.83606 -37.66089 -35.93544 -35.53200 -32.73676 -31.46775 -31.21305 -28.30383 -28.11926 -27.53792 -27.04886 -26.11030 -23.97505 -22.91252 -22.52285 -21.17948 -19.68618 -19.38924 -17.96892 -17.37265 -17.04006 -16.82268 -16.73974 -16.66279 -16.46218 -16.16898 -15.53236 -15.37820 -15.04165 -14.65227 -14.57119 -14.31228 -14.22557 -14.19258 -13.59866 -13.41589 -13.10427 -12.93864 -12.81029 -12.76350 -12.65890 -12.54744 -12.50881 -12.27156 -12.18878 -11.90443 -11.87410 -11.55326 -11.49666 -11.36265 -11.27930 -11.06428 -10.76056 -10.56346 -10.12554 -9.46359 -9.37874 -8.66494 -6.38017 0.38846 1.01794 1.36030 1.47971 1.50661 2.10811 2.19389 2.26895 2.79129 2.87469 3.70500 3.79280 3.85120 3.89639 4.04723 4.11263 4.25394 4.40040 4.44041 4.50177 4.50606 4.56252 4.60141 4.60965 4.69777 4.70915 4.80817 4.86656 4.88230 4.95292 4.95374 5.08998 5.12008 5.12437 5.20182 5.20670 5.26737 5.31219 5.32054 5.48629 5.52768 5.54776 5.58484 5.87388 5.93325 6.05819 6.27052 6.29318 6.52355 6.70653 6.87962 6.95159 7.33052 8.30178 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.027637 B = 0.002020 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.882960 B =13854.841501 C =14586.110859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.069 3.931 4 C -0.058 4.058 5 C -0.138 4.138 6 C -0.139 4.139 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.119 3.881 10 N -0.713 5.713 11 C 0.558 3.442 12 O -0.592 6.592 13 C -0.140 4.140 14 C -0.197 4.197 15 C -0.096 4.096 16 C -0.218 4.218 17 C 0.066 3.934 18 C -0.499 4.499 19 H 0.084 0.916 20 C 0.029 3.971 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.133 4.133 27 H 0.094 0.906 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.413 0.587 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.109 0.891 48 H 0.286 0.714 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.594 -15.562 -2.062 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.008 4.008 4 C -0.058 4.058 5 C -0.196 4.196 6 C -0.196 4.196 7 C -0.140 4.140 8 C -0.157 4.157 9 C -0.005 4.005 10 N -0.366 5.366 11 C 0.348 3.652 12 O -0.474 6.474 13 C -0.143 4.143 14 C -0.217 4.217 15 C -0.113 4.113 16 C -0.238 4.238 17 C 0.064 3.936 18 C -0.528 4.528 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.175 1.175 26 C -0.153 4.153 27 H 0.113 0.887 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.251 0.749 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.127 0.873 48 H 0.097 0.903 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.047 -14.834 -1.906 23.438 hybrid contribution 0.200 1.043 0.056 1.063 sum -17.847 -13.791 -1.850 22.630 Atomic orbital electron populations 1.22881 0.80087 1.03559 1.00527 1.87834 1.20759 1.28492 1.95503 1.22630 0.93340 0.84364 1.00459 1.20518 0.92742 0.95524 0.97056 1.21843 1.01489 1.00071 0.96157 1.21843 1.01481 1.00085 0.96182 1.21453 0.93806 0.95769 1.03006 1.21816 0.95549 0.94061 1.04239 1.21433 0.78563 0.99226 1.01241 1.45770 1.07113 1.08570 1.75137 1.18765 0.87722 0.84009 0.74742 1.90665 1.75679 1.28766 1.52291 1.19813 0.91366 0.95581 1.07588 1.20869 0.95149 0.94564 1.11082 1.20938 0.93404 0.98072 0.98934 1.21414 0.98953 0.92446 1.10938 1.17957 0.91983 0.93842 0.89850 1.19848 1.01007 0.94141 1.37782 0.89742 1.26868 0.95092 1.04751 0.91904 1.69887 1.21619 1.30585 1.23020 0.85237 0.79308 0.75495 0.79625 1.18512 1.19700 1.17528 1.21449 0.93985 0.96916 1.02962 0.88750 0.93565 0.93533 0.92988 0.92902 0.91732 0.92729 0.92793 0.92889 0.92709 0.91758 0.91236 0.91101 0.89696 0.89879 0.92688 0.92952 0.74856 0.84402 0.84254 0.87337 0.90308 0.88421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.68 9.35 -148.98 -1.39 -8.08 16 3 C 0.07 0.98 4.80 71.98 0.35 1.33 16 4 C -0.06 -0.83 0.63 -52.18 -0.03 -0.86 16 5 C -0.14 -1.99 7.97 71.98 0.57 -1.41 16 6 C -0.14 -2.03 7.98 71.98 0.57 -1.45 16 7 C -0.10 -1.50 4.27 30.60 0.13 -1.37 16 8 C -0.12 -1.97 4.62 30.59 0.14 -1.83 16 9 C 0.12 3.05 5.67 86.38 0.49 3.54 16 10 N -0.71 -22.23 5.51 -465.93 -2.57 -24.80 16 11 C 0.56 24.78 7.77 86.80 0.67 25.46 16 12 O -0.59 -31.36 16.33 -3.86 -0.06 -31.43 16 13 C -0.14 -6.69 5.87 -20.13 -0.12 -6.81 16 14 C -0.20 -7.69 9.55 22.70 0.22 -7.47 16 15 C -0.10 -3.77 10.01 22.18 0.22 -3.55 16 16 C -0.22 -10.21 9.78 22.77 0.22 -9.99 16 17 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 18 C -0.50 -27.41 9.05 23.47 0.21 -27.20 16 19 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 20 C 0.03 1.52 5.14 85.25 0.44 1.96 16 21 N -0.83 -46.67 10.96 21.82 0.24 -46.43 16 22 Si 0.98 40.00 29.59 68.60 2.03 42.03 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 26 C -0.13 -7.46 8.24 23.01 0.19 -7.27 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 33 H 0.05 0.87 7.68 -2.38 -0.02 0.85 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 36 H 0.05 0.88 7.68 -2.38 -0.02 0.86 16 37 H 0.06 0.87 6.43 -2.39 -0.02 0.86 16 38 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.26 6.43 -2.38 -0.02 1.24 16 41 H 0.08 1.27 6.43 -2.38 -0.02 1.25 16 42 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 43 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.41 10.19 6.49 -92.71 -0.60 9.59 16 45 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 46 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 47 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 48 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 49 H 0.10 6.14 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -70.75 392.58 3.99 -66.76 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.33 Total: 33.83 kcal Atomic # 6 Polarization: -37.30 SS G_CDS: 5.41 Total: -31.89 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -2.33 Total: -71.23 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.46 Total: -39.50 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Total: -70.75 3.99 -66.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288402956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.975 kcal (2) G-P(sol) polarization free energy of solvation -70.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds