Wall clock time and date at job start Tue Mar 31 2020 12:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35902 * 116.99609 * 2 1 4 4 C 1.38748 * 120.05728 * 359.95695 * 3 2 1 5 5 C 1.38121 * 119.94364 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05648 * 359.96737 * 5 4 3 7 7 C 1.38244 * 120.11224 * 0.03530 * 6 5 4 8 8 C 1.38169 * 120.05648 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02940 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.46804 * 213.94861 * 9 8 7 11 11 C 1.53004 * 109.46966 * 93.95434 * 9 8 7 12 12 C 1.52992 * 109.47065 * 175.05799 * 11 9 8 13 13 C 1.53006 * 109.47245 * 66.74527 * 12 11 9 14 14 C 1.53002 * 109.47139 * 186.74553 * 12 11 9 15 15 N 1.46491 * 109.47258 * 333.95220 * 9 8 7 16 16 C 1.34778 * 119.99969 * 277.14989 * 15 9 8 17 17 O 1.21277 * 119.99875 * 354.80459 * 16 15 9 18 18 C 1.50704 * 120.00002 * 174.80854 * 16 15 9 19 19 C 1.52997 * 109.47164 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.47280 * 179.97438 * 19 18 16 21 21 H 1.07998 * 119.99960 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00280 * 180.02562 * 20 19 18 23 23 N 1.31519 * 120.00289 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99786 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.47055 * 90.00636 * 24 22 20 26 26 H 1.48505 * 109.47002 * 210.00326 * 24 22 20 27 27 H 1.48493 * 109.47252 * 330.00509 * 24 22 20 28 28 H 1.08994 * 109.47114 * 299.99638 * 1 2 3 29 29 H 1.09004 * 109.46738 * 60.00336 * 1 2 3 30 30 H 1.08999 * 109.46560 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.02994 * 0.04202 * 4 3 2 32 32 H 1.07996 * 119.97420 * 180.25671 * 5 4 3 33 33 H 1.08002 * 119.94867 * 179.97438 * 6 5 4 34 34 H 1.08003 * 119.97453 * 179.97438 * 7 6 5 35 35 H 1.09003 * 109.46976 * 295.05685 * 11 9 8 36 36 H 1.08999 * 109.47194 * 55.05883 * 11 9 8 37 37 H 1.08997 * 109.47386 * 306.74984 * 12 11 9 38 38 H 1.09006 * 109.46756 * 52.05693 * 13 12 11 39 39 H 1.09000 * 109.46875 * 172.05067 * 13 12 11 40 40 H 1.08999 * 109.46845 * 292.05510 * 13 12 11 41 41 H 1.09001 * 109.47388 * 60.00136 * 14 12 11 42 42 H 1.08997 * 109.47273 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47193 * 299.99995 * 14 12 11 44 44 H 0.96999 * 120.00171 * 97.14581 * 15 9 8 45 45 H 1.09003 * 109.46883 * 299.99788 * 18 16 15 46 46 H 1.08999 * 109.46957 * 59.99614 * 18 16 15 47 47 H 1.09003 * 109.47188 * 299.99773 * 19 18 16 48 48 H 1.09005 * 109.47228 * 59.99622 * 19 18 16 49 49 H 0.97002 * 119.99951 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0009 5 6 1.9207 3.6047 -0.0014 6 6 3.3018 3.6758 -0.0004 7 6 4.0559 2.5172 0.0005 8 6 3.4311 1.2848 0.0008 9 6 4.2538 0.0222 0.0023 10 1 3.7383 -0.7479 -0.5715 11 6 4.4477 -0.4584 1.4419 12 6 5.1762 -1.8038 1.4366 13 6 6.6029 -1.6092 0.9194 14 6 5.2215 -2.3647 2.8594 15 7 5.5605 0.2900 -0.6033 16 6 5.6980 0.2734 -1.9440 17 8 4.7647 -0.0552 -2.6452 18 6 7.0116 0.6630 -2.5716 19 6 6.9004 0.5584 -4.0939 20 6 8.2137 0.9485 -4.7215 21 1 9.0445 1.2422 -4.0971 22 6 8.3544 0.9316 -6.0930 23 7 9.5007 1.2716 -6.6407 24 14 6.9172 0.4244 -7.1731 25 1 6.1112 1.6226 -7.5195 26 1 7.4304 -0.2035 -8.4172 27 1 6.0675 -0.5491 -6.4414 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2127 2.3203 -0.0009 32 1 1.3339 4.5113 0.0021 33 1 3.7922 4.6381 -0.0012 34 1 5.1344 2.5753 0.0009 35 1 5.0393 0.2730 1.9925 36 1 3.4752 -0.5737 1.9206 37 1 4.6465 -2.5012 0.7877 38 1 7.0868 -0.8096 1.4803 39 1 7.1650 -2.5343 1.0472 40 1 6.5733 -1.3451 -0.1377 41 1 4.2051 -2.5034 3.2279 42 1 5.7409 -3.3230 2.8557 43 1 5.7513 -1.6673 3.5082 44 1 6.3267 0.4794 -0.0395 45 1 7.2568 1.6883 -2.2944 46 1 7.7959 -0.0064 -2.2180 47 1 6.6555 -0.4671 -4.3707 48 1 6.1160 1.2274 -4.4478 49 1 9.5998 1.2594 -7.6056 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292224114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:05 Heat of formation + Delta-G solvation = -85.226348 kcal Electronic energy + Delta-G solvation = -27704.891920 eV Core-core repulsion = 24016.965029 eV Total energy + Delta-G solvation = -3687.926890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.66660 -40.53488 -38.55135 -37.88399 -35.55573 -35.00803 -33.46710 -32.48004 -31.08020 -29.62618 -28.09449 -28.04564 -27.72952 -24.83669 -23.51327 -22.94307 -21.80131 -21.45938 -20.67949 -19.19111 -19.01692 -17.69660 -17.46918 -17.17006 -16.66643 -16.54732 -16.23368 -16.14174 -15.50627 -15.38343 -15.13137 -14.78173 -14.72082 -14.54020 -14.36632 -14.14697 -13.84710 -13.62202 -13.39863 -13.08068 -12.92510 -12.89480 -12.68627 -12.58848 -12.27594 -12.09193 -12.00615 -11.98770 -11.95186 -11.77248 -11.76518 -11.59528 -11.44648 -11.38917 -10.77992 -10.72261 -9.91166 -9.76445 -9.08716 -8.31556 -6.33681 0.35988 0.49358 1.31454 1.33461 1.48984 1.74039 2.27961 2.34449 2.39655 2.80551 3.04290 3.61469 3.90576 3.93193 3.99097 4.04967 4.07854 4.23644 4.28431 4.37208 4.40522 4.42546 4.46668 4.50357 4.52348 4.56514 4.70349 4.74868 4.80879 4.84409 4.88076 4.99780 5.03741 5.09655 5.10657 5.16236 5.28719 5.35271 5.35542 5.44018 5.45357 5.48984 5.51576 5.58087 5.61590 5.70705 5.87033 6.24238 6.45684 6.63440 6.72554 7.31663 7.37838 8.84127 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011132 B = 0.003862 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.745276 B = 7247.573408 C = 8482.437328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.333 6.333 3 C 0.117 3.883 4 C -0.214 4.214 5 C -0.088 4.088 6 C -0.165 4.165 7 C -0.083 4.083 8 C -0.142 4.142 9 C 0.200 3.800 10 H 0.065 0.935 11 C -0.099 4.099 12 C -0.093 4.093 13 C -0.166 4.166 14 C -0.141 4.141 15 N -0.708 5.708 16 C 0.516 3.484 17 O -0.583 6.583 18 C -0.117 4.117 19 C 0.007 3.993 20 C -0.526 4.526 21 H 0.053 0.947 22 C 0.017 3.983 23 N -0.942 5.942 24 Si 0.934 3.066 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.265 1.265 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.416 0.584 45 H 0.103 0.897 46 H 0.103 0.897 47 H 0.007 0.993 48 H 0.004 0.996 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.979 -0.429 24.151 29.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.106 4.106 6 C -0.183 4.183 7 C -0.101 4.101 8 C -0.144 4.144 9 C 0.095 3.905 10 H 0.083 0.917 11 C -0.137 4.137 12 C -0.112 4.112 13 C -0.224 4.224 14 C -0.198 4.198 15 N -0.362 5.362 16 C 0.304 3.696 17 O -0.462 6.462 18 C -0.157 4.157 19 C -0.031 4.031 20 C -0.564 4.564 21 H 0.071 0.929 22 C -0.181 4.181 23 N -0.583 5.583 24 Si 0.759 3.241 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.189 1.189 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.159 0.841 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.256 0.744 45 H 0.121 0.879 46 H 0.121 0.879 47 H 0.026 0.974 48 H 0.023 0.977 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.472 -0.839 23.507 29.301 hybrid contribution -0.273 0.028 -0.946 0.985 sum -17.745 -0.810 22.561 28.715 Atomic orbital electron populations 1.23301 0.76769 1.05315 1.02078 1.86062 1.23183 1.26860 1.88591 1.19010 0.91812 0.85099 0.96975 1.21480 1.00980 0.92057 1.08770 1.21283 0.94822 0.97742 0.96720 1.21361 0.94478 0.98879 1.03570 1.21022 1.00682 0.91161 0.97272 1.19758 0.91199 0.96523 1.06881 1.19537 0.82659 0.93114 0.95218 0.91661 1.21815 1.01950 0.97240 0.92710 1.21069 0.96378 0.95991 0.97750 1.22288 0.95865 1.02388 1.01843 1.21790 1.01973 1.00969 0.95078 1.46281 1.12215 1.71827 1.05916 1.21169 0.90222 0.75646 0.82559 1.90644 1.43615 1.48870 1.63104 1.21518 0.93878 1.04004 0.96267 1.19192 0.94935 0.96062 0.92914 1.21422 0.97988 1.44738 0.92277 0.92924 1.25741 0.97905 0.94810 0.99659 1.70017 1.26175 1.50371 1.11744 0.85892 0.80187 0.79503 0.78502 1.19484 1.20194 1.18928 0.90960 0.92618 0.86733 0.83475 0.83330 0.84116 0.84852 0.89650 0.90247 0.92980 0.90927 0.92769 0.92557 0.92489 0.92545 0.91702 0.74431 0.87900 0.87901 0.97440 0.97718 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.33 -8.17 9.61 -92.45 -0.89 -9.06 16 3 C 0.12 3.00 6.66 22.51 0.15 3.15 16 4 C -0.21 -4.53 9.04 22.36 0.20 -4.33 16 5 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 6 C -0.16 -3.54 10.04 22.28 0.22 -3.32 16 7 C -0.08 -2.03 9.32 22.25 0.21 -1.82 16 8 C -0.14 -3.77 4.99 -19.77 -0.10 -3.87 16 9 C 0.20 5.18 1.92 44.25 0.09 5.27 16 10 H 0.07 2.17 7.09 -2.39 -0.02 2.15 16 11 C -0.10 -1.85 4.36 30.59 0.13 -1.72 16 12 C -0.09 -1.70 2.90 -10.79 -0.03 -1.73 16 13 C -0.17 -3.06 7.73 71.98 0.56 -2.50 16 14 C -0.14 -2.00 9.19 71.98 0.66 -1.33 16 15 N -0.71 -18.57 1.63 -446.10 -0.73 -19.30 16 16 C 0.52 18.89 7.43 87.66 0.65 19.54 16 17 O -0.58 -27.12 15.65 -3.02 -0.05 -27.16 16 18 C -0.12 -4.50 5.64 29.85 0.17 -4.33 16 19 C 0.01 0.35 3.33 29.85 0.10 0.45 16 20 C -0.53 -30.71 9.66 25.60 0.25 -30.46 16 21 H 0.05 3.21 7.99 -2.91 -0.02 3.18 16 22 C 0.02 1.00 5.47 84.65 0.46 1.46 16 23 N -0.94 -59.44 13.96 21.45 0.30 -59.15 16 24 Si 0.93 47.75 27.47 68.60 1.88 49.64 16 25 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.26 -13.61 6.54 99.48 0.65 -12.96 16 28 H 0.07 0.79 7.66 -2.39 -0.02 0.78 16 29 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.15 2.30 6.30 -2.91 -0.02 2.29 16 32 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.14 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.13 2.93 7.29 -2.91 -0.02 2.91 16 35 H 0.08 1.31 8.11 -2.39 -0.02 1.29 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.04 7.84 -2.38 -0.02 1.02 16 39 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 40 H 0.06 1.28 5.30 -2.39 -0.01 1.26 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.42 8.20 6.73 -92.71 -0.62 7.57 16 45 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 46 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 47 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 48 H 0.00 0.24 7.53 -2.38 -0.02 0.22 16 49 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -77.49 390.95 5.82 -71.67 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.25 Total: 19.00 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 5.05 Total: -25.64 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -0.43 Total: -78.44 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -0.94 Total: -36.22 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 1.88 Total: 49.64 kcal Total: -77.49 5.82 -71.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292224114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.557 kcal (2) G-P(sol) polarization free energy of solvation -77.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds