Wall clock time and date at job start Tue Mar 31 2020 13:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 C 1.53002 * 109.46642 * 120.00241 * 2 1 3 5 5 H 1.08995 * 109.58618 * 300.16864 * 4 2 1 6 6 C 1.54277 * 109.52457 * 179.97438 * 4 2 1 7 7 N 1.40437 * 111.68928 * 162.87549 * 6 4 2 8 8 C 1.46899 * 111.00199 * 188.29878 * 7 6 4 9 9 C 1.50697 * 109.47217 * 169.99973 * 8 7 6 10 10 C 1.38302 * 119.93023 * 269.72952 * 9 8 7 11 11 C 1.38104 * 120.06557 * 179.72567 * 10 9 8 12 12 C 1.38872 * 119.93342 * 0.52212 * 11 10 9 13 13 O 1.35756 * 120.07329 * 179.72975 * 12 11 10 14 14 C 1.34825 * 117.00127 * 174.49091 * 13 12 11 15 15 H 1.07999 * 120.00449 * 5.05114 * 14 13 12 16 16 C 1.38654 * 119.99998 * 185.05598 * 14 13 12 17 17 N 1.31562 * 119.99954 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00268 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47212 * 59.99827 * 18 16 14 20 20 H 1.48500 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46531 * 299.99879 * 18 16 14 22 22 C 1.38877 * 119.86275 * 359.75082 * 12 11 10 23 23 C 1.38102 * 119.93018 * 359.97438 * 22 12 11 24 24 C 1.47637 * 114.31737 * 61.80758 * 7 6 4 25 25 C 1.50895 * 108.77145 * 280.00656 * 24 7 6 26 26 C 1.53610 * 111.72069 * 91.00528 * 25 24 7 27 27 O 1.40621 * 109.53069 * 60.35447 * 4 2 1 28 28 H 1.09000 * 109.47112 * 300.00491 * 1 2 3 29 29 H 1.09001 * 109.46933 * 60.00020 * 1 2 3 30 30 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46981 * 239.99831 * 2 1 3 32 32 H 1.08999 * 109.47086 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47118 * 299.99866 * 3 2 1 34 34 H 1.08994 * 109.47057 * 59.99903 * 3 2 1 35 35 H 1.09005 * 109.03755 * 42.30613 * 6 4 2 36 36 H 1.09002 * 108.97915 * 283.40560 * 6 4 2 37 37 H 1.09001 * 109.47496 * 289.99717 * 8 7 6 38 38 H 1.09001 * 109.47345 * 50.00389 * 8 7 6 39 39 H 1.07997 * 119.96705 * 359.97438 * 10 9 8 40 40 H 1.08007 * 120.03475 * 180.27361 * 11 10 9 41 41 H 0.96991 * 120.00322 * 179.97438 * 17 16 14 42 42 H 1.08000 * 120.03751 * 180.02562 * 22 12 11 43 43 H 1.08002 * 119.96735 * 180.02562 * 23 22 12 44 44 H 1.09005 * 109.58773 * 39.78651 * 24 7 6 45 45 H 1.08996 * 109.59053 * 160.21589 * 24 7 6 46 46 H 1.09002 * 109.02583 * 330.42534 * 25 24 7 47 47 H 1.08996 * 108.96803 * 211.54788 * 25 24 7 48 48 H 1.09004 * 108.87017 * 197.85029 * 26 25 24 49 49 H 1.09002 * 108.78526 * 79.37388 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6751 -0.2108 2.1405 6 6 3.5827 -0.7227 1.2503 7 7 4.1006 -1.0138 2.5228 8 6 5.5563 -0.8193 2.5559 9 6 6.0416 -0.8995 3.9803 10 6 6.1085 0.2462 4.7520 11 6 6.5475 0.1751 6.0595 12 6 6.9322 -1.0467 6.5958 13 8 7.3693 -1.1190 7.8790 14 6 7.6181 -2.3488 8.3726 15 1 7.5465 -3.2135 7.7295 16 6 7.9657 -2.5034 9.7059 17 7 8.0533 -1.4501 10.4893 18 14 8.3097 -4.2073 10.3900 19 1 9.4434 -4.8180 9.6505 20 1 8.6568 -4.1018 11.8300 21 1 7.1017 -5.0566 10.2333 22 6 6.8691 -2.1946 5.8166 23 6 6.4239 -2.1179 4.5115 24 6 3.7332 -2.3476 3.0382 25 6 2.3318 -2.2842 3.5940 26 6 1.2815 -2.6350 2.5294 27 8 1.5785 -2.0497 1.2463 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9393 0.2587 0.9372 36 1 3.9370 -1.4719 0.5423 37 1 6.0402 -1.5956 1.9630 38 1 5.8017 0.1592 2.1430 39 1 5.8135 1.1969 4.3330 40 1 6.5954 1.0695 6.6631 41 1 8.2961 -1.5583 11.4221 42 1 7.1672 -3.1463 6.2310 43 1 6.3743 -3.0102 3.9051 44 1 3.7723 -3.0759 2.2281 45 1 4.4265 -2.6382 3.8273 46 1 2.1411 -1.2764 3.9631 47 1 2.2470 -2.9876 4.4223 48 1 0.3076 -2.2770 2.8635 49 1 1.2400 -3.7188 2.4210 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292898173.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:34 Heat of formation + Delta-G solvation = -47.499862 kcal Electronic energy + Delta-G solvation = -27332.852199 eV Core-core repulsion = 23646.561252 eV Total energy + Delta-G solvation = -3686.290947 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.17641 -39.00975 -37.30135 -35.79333 -35.56123 -32.37469 -32.17628 -30.48294 -30.14838 -27.84369 -27.15062 -26.33235 -25.52932 -24.16547 -22.03496 -21.72897 -20.80151 -20.48367 -19.82209 -17.97921 -17.00208 -16.94189 -16.47420 -15.66702 -15.33524 -14.92373 -14.66600 -14.58888 -14.38791 -14.16853 -13.92066 -13.59171 -13.50140 -13.12746 -12.93948 -12.70372 -12.50371 -12.43887 -12.20009 -12.13399 -11.86509 -11.70269 -11.43278 -11.36752 -11.26203 -11.17938 -10.91466 -10.80167 -10.73936 -10.65001 -10.44450 -10.38482 -10.31414 -9.45780 -9.33875 -8.83002 -8.16871 -8.10252 -7.17249 -6.45508 -4.04484 2.21115 2.28286 3.12179 3.13006 3.16049 3.55457 3.95784 4.02709 4.54184 4.62343 4.70069 4.83518 4.91163 4.97987 5.07765 5.13625 5.19712 5.25690 5.29270 5.31022 5.40542 5.42410 5.44426 5.52462 5.54852 5.65096 5.69085 5.71547 5.78570 5.81302 5.82226 5.89296 5.91522 5.94774 6.09974 6.13264 6.16808 6.21399 6.25039 6.43292 6.70801 6.89851 7.03577 7.14957 7.24278 7.31605 7.39202 7.43588 7.54086 7.83033 7.99369 9.00019 9.70531 10.72480 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.002638 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.247076 B =10609.995463 C =11180.790523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.148 4.148 4 C 0.103 3.897 5 H 0.067 0.933 6 C 0.046 3.954 7 N -0.549 5.549 8 C 0.119 3.881 9 C -0.178 4.178 10 C -0.052 4.052 11 C -0.194 4.194 12 C 0.156 3.844 13 O -0.178 6.178 14 C -0.392 4.392 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.863 5.863 18 Si 0.940 3.060 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.270 1.270 22 C -0.234 4.234 23 C -0.067 4.067 24 C 0.058 3.942 25 C -0.153 4.153 26 C 0.066 3.934 27 O -0.385 6.385 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.024 0.976 37 H 0.031 0.969 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.270 0.730 42 H 0.125 0.875 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.092 0.908 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.048 0.952 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.067 0.818 -18.767 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.205 4.205 4 C 0.044 3.956 5 H 0.085 0.915 6 C -0.084 4.084 7 N -0.273 5.273 8 C -0.007 4.007 9 C -0.179 4.179 10 C -0.071 4.071 11 C -0.213 4.213 12 C 0.102 3.898 13 O -0.081 6.081 14 C -0.468 4.468 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.498 5.498 18 Si 0.765 3.235 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.195 1.195 22 C -0.253 4.253 23 C -0.086 4.086 24 C -0.069 4.069 25 C -0.191 4.191 26 C -0.011 4.011 27 O -0.304 6.304 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.049 0.951 38 H 0.090 0.910 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.080 0.920 42 H 0.143 0.857 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.066 0.934 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.187 1.255 -18.215 21.952 hybrid contribution 0.548 -1.388 0.152 1.499 sum -11.640 -0.132 -18.063 21.489 Atomic orbital electron populations 1.21752 0.94753 1.02177 1.01323 1.21155 0.96329 0.95750 0.97848 1.21908 1.01389 0.95179 1.02051 1.22001 0.92272 0.83320 0.98022 0.91512 1.21685 0.95692 1.01013 0.89964 1.59186 1.12163 1.29622 1.26378 1.20739 0.85594 1.00310 0.94017 1.19078 1.09351 0.93764 0.95753 1.20439 0.96958 0.97050 0.92677 1.20217 1.08761 0.96210 0.96118 1.19391 0.91173 0.93352 0.85906 1.83981 1.71481 1.31539 1.21124 1.21262 1.48377 0.82744 0.94449 0.89179 1.25281 0.96737 0.99511 0.94957 1.70026 1.44171 1.29219 1.06366 0.85796 0.79156 0.80337 0.78233 1.19519 1.20267 1.19516 1.21111 1.10001 0.99169 0.95044 1.20580 0.97402 0.95997 0.94628 1.21877 0.96650 0.88595 0.99752 1.22003 0.94967 1.03673 0.98503 1.22944 0.96698 0.97967 0.83444 1.87437 1.85860 1.27877 1.29275 0.92981 0.92854 0.92051 0.90732 0.92051 0.92372 0.92347 0.90070 0.95844 0.95059 0.90966 0.87139 0.86618 0.91968 0.85682 0.87895 0.94429 0.88950 0.90326 0.90450 0.93413 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.05 37.16 0.34 -0.84 16 2 C -0.09 -0.81 2.72 -90.62 -0.25 -1.06 16 3 C -0.15 -1.13 8.90 37.16 0.33 -0.80 16 4 C 0.10 1.10 1.81 -26.06 -0.05 1.06 16 5 H 0.07 0.78 7.11 -51.93 -0.37 0.41 16 6 C 0.05 0.53 4.45 -6.50 -0.03 0.50 16 7 N -0.55 -7.20 4.09 -241.02 -0.99 -8.19 16 8 C 0.12 1.63 5.13 -4.98 -0.03 1.61 16 9 C -0.18 -2.98 4.88 -104.58 -0.51 -3.49 16 10 C -0.05 -0.93 9.69 -39.61 -0.38 -1.31 16 11 C -0.19 -4.07 9.99 -39.40 -0.39 -4.47 16 12 C 0.16 3.73 6.65 -39.11 -0.26 3.47 16 13 O -0.18 -5.07 9.76 0.04 0.00 -5.06 16 14 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 15 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 16 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 17 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 18 Si 0.94 20.44 29.55 -169.99 -5.02 15.41 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 C -0.23 -5.00 9.17 -39.39 -0.36 -5.36 16 23 C -0.07 -1.20 7.71 -39.61 -0.31 -1.51 16 24 C 0.06 0.76 5.15 -4.48 -0.02 0.74 16 25 C -0.15 -1.81 5.41 -27.47 -0.15 -1.96 16 26 C 0.07 0.69 6.72 37.47 0.25 0.94 16 27 O -0.39 -4.54 9.09 -34.27 -0.31 -4.85 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.55 7.70 -51.93 -0.40 0.15 16 31 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.06 0.47 6.09 -51.93 -0.32 0.15 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.84 5.39 -51.93 -0.28 0.56 16 36 H 0.02 0.29 8.09 -51.93 -0.42 -0.13 16 37 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 39 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.12 2.37 8.06 -52.48 -0.42 1.94 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 43 H 0.10 1.60 7.60 -52.49 -0.40 1.20 16 44 H 0.04 0.49 7.64 -51.93 -0.40 0.10 16 45 H 0.09 1.36 4.55 -51.93 -0.24 1.12 16 46 H 0.08 1.02 7.39 -51.93 -0.38 0.63 16 47 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -29.95 377.73 -9.45 -39.39 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.96 Total: 4.24 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -1.62 Total: -22.12 kcal Atomic # 7 Polarization: -32.48 SS G_CDS: -0.23 Total: -32.71 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.31 Total: -9.92 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.95 -9.45 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292898173.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.105 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds