Wall clock time and date at job start Tue Mar 31 2020 13:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46898 * 2 1 4 4 C 1.52992 * 109.47153 * 120.00077 * 2 1 3 5 5 H 1.09003 * 108.98356 * 61.15156 * 4 2 1 6 6 C 1.50743 * 108.99710 * 179.97438 * 4 2 1 7 7 N 1.47604 * 108.45549 * 213.91250 * 6 4 2 8 8 C 1.46901 * 110.99741 * 152.98119 * 7 6 4 9 9 C 1.50693 * 109.47060 * 194.50197 * 8 7 6 10 10 C 1.38305 * 119.92847 * 269.72478 * 9 8 7 11 11 C 1.38103 * 120.06615 * 179.72082 * 10 9 8 12 12 C 1.38880 * 119.93265 * 0.57705 * 11 10 9 13 13 O 1.35754 * 120.07005 * 179.67790 * 12 11 10 14 14 C 1.34823 * 116.99697 * 174.48692 * 13 12 11 15 15 H 1.07998 * 120.00398 * 5.05761 * 14 13 12 16 16 C 1.38656 * 120.00010 * 185.06068 * 14 13 12 17 17 N 1.31564 * 119.99729 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00366 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47054 * 59.99780 * 18 16 14 20 20 H 1.48503 * 109.47069 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46945 * 299.99482 * 18 16 14 22 22 C 1.38884 * 119.86058 * 359.69749 * 12 11 10 23 23 C 1.38099 * 119.93208 * 0.02562 * 22 12 11 24 24 C 1.40461 * 114.43091 * 279.56165 * 7 6 4 25 25 C 1.54398 * 111.44620 * 61.24812 * 24 7 6 26 26 C 1.50727 * 109.13248 * 284.57213 * 25 24 7 27 27 O 1.43859 * 108.97991 * 302.42487 * 4 2 1 28 28 H 1.08997 * 109.47151 * 299.99352 * 1 2 3 29 29 H 1.08993 * 109.47121 * 59.99978 * 1 2 3 30 30 H 1.09003 * 109.46654 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46720 * 240.00396 * 2 1 3 32 32 H 1.09000 * 109.47471 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.47349 * 300.00092 * 3 2 1 34 34 H 1.09000 * 109.47385 * 60.00160 * 3 2 1 35 35 H 1.09000 * 109.63563 * 94.22795 * 6 4 2 36 36 H 1.08994 * 109.80963 * 333.70661 * 6 4 2 37 37 H 1.09002 * 109.47359 * 314.49981 * 8 7 6 38 38 H 1.09000 * 109.47361 * 74.49905 * 8 7 6 39 39 H 1.07993 * 119.96666 * 359.97438 * 10 9 8 40 40 H 1.08004 * 120.03107 * 180.27199 * 11 10 9 41 41 H 0.96997 * 119.99658 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.03466 * 180.02562 * 22 12 11 43 43 H 1.07991 * 119.96560 * 179.97438 * 23 22 12 44 44 H 1.08997 * 109.08468 * 300.74060 * 24 7 6 45 45 H 1.08996 * 109.08245 * 181.75415 * 24 7 6 46 46 H 1.08996 * 109.52212 * 164.67456 * 25 24 7 47 47 H 1.08999 * 109.58361 * 44.50103 * 25 24 7 48 48 H 1.09002 * 108.79999 * 212.39124 * 26 25 24 49 49 H 1.08997 * 108.80985 * 330.76452 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6893 -1.7531 1.2308 6 6 3.5474 -0.7155 1.2380 7 7 4.0239 -1.9712 1.8504 8 6 5.3471 -2.3413 1.3306 9 6 5.6452 -3.7741 1.6899 10 6 6.2908 -4.0677 2.8773 11 6 6.5602 -5.3802 3.2121 12 6 6.1928 -6.4048 2.3496 13 8 6.4621 -7.6955 2.6729 14 6 5.9785 -8.6466 1.8488 15 1 5.4764 -8.3651 0.9350 16 6 6.1257 -9.9864 2.1744 17 7 6.7377 -10.3294 3.2873 18 14 5.4563 -11.3042 1.0323 19 1 6.1073 -11.1844 -0.2970 20 1 5.7407 -12.6452 1.6033 21 1 3.9891 -11.1306 0.8824 22 6 5.5497 -6.1063 1.1554 23 6 5.2779 -4.7922 0.8289 24 6 4.0167 -1.9718 3.2550 25 6 2.5902 -1.7760 3.8123 26 6 2.1937 -0.3300 3.6580 27 8 1.5083 -0.0689 2.4159 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.9147 0.1347 1.8127 36 1 3.9090 -0.6480 0.2120 37 1 5.3560 -2.2293 0.2464 38 1 6.1045 -1.6916 1.7691 39 1 6.5809 -3.2702 3.5451 40 1 7.0605 -5.6092 4.1415 41 1 6.8409 -11.2666 3.5149 42 1 5.2624 -6.9009 0.4828 43 1 4.7783 -4.5594 -0.0997 44 1 4.6539 -1.1641 3.6150 45 1 4.4118 -2.9224 3.6129 46 1 2.5707 -2.0486 4.8674 47 1 1.8927 -2.4059 3.2602 48 1 1.5389 -0.0552 4.4850 49 1 3.0911 0.2870 3.7011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292898175.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:37 Heat of formation + Delta-G solvation = -65.481566 kcal Electronic energy + Delta-G solvation = -27289.424304 eV Core-core repulsion = 23602.353611 eV Total energy + Delta-G solvation = -3687.070692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27269 -40.58327 -38.71733 -37.17075 -36.12395 -34.31893 -32.92271 -31.79070 -31.66240 -29.12357 -28.00904 -27.61987 -27.06483 -25.39084 -23.64412 -22.63785 -22.34052 -21.53213 -20.32224 -19.83614 -18.83822 -17.99936 -17.31313 -16.82901 -16.48345 -16.28184 -15.88651 -15.75102 -15.61175 -15.43565 -15.07302 -14.92777 -14.57927 -14.47032 -14.29355 -14.09454 -13.92199 -13.58077 -13.31620 -13.06474 -12.97640 -12.80077 -12.67532 -12.61252 -12.48373 -12.30371 -12.15560 -12.07289 -11.95234 -11.76357 -11.72832 -11.34331 -11.28008 -11.16423 -10.78074 -10.35384 -9.75089 -9.18564 -8.86902 -8.47040 -6.15111 0.60566 0.68527 1.34734 1.45356 1.50938 2.17983 2.70559 2.82220 3.00694 3.29771 3.52628 3.77002 3.84966 3.94002 3.99954 4.09236 4.11132 4.18979 4.20765 4.29301 4.37375 4.43311 4.45518 4.56631 4.60569 4.62417 4.67784 4.76252 4.82654 4.85785 4.89980 4.98335 5.00679 5.07624 5.08988 5.10335 5.15644 5.18304 5.27358 5.30198 5.31463 5.47700 5.57233 5.57397 5.72920 5.82404 6.03288 6.09735 6.24674 6.27352 6.53442 6.97781 7.78984 8.76069 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002642 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.379992 B =10597.231376 C =11069.315503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.141 4.141 4 C 0.101 3.899 5 H 0.052 0.948 6 C 0.041 3.959 7 N -0.560 5.560 8 C 0.122 3.878 9 C -0.154 4.154 10 C -0.059 4.059 11 C -0.205 4.205 12 C 0.114 3.886 13 O -0.233 6.233 14 C -0.414 4.414 15 H 0.101 0.899 16 C -0.023 4.023 17 N -0.922 5.922 18 Si 1.017 2.983 19 H -0.256 1.256 20 H -0.272 1.272 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.048 4.048 24 C 0.065 3.935 25 C -0.150 4.150 26 C 0.064 3.936 27 O -0.398 6.398 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.141 0.859 40 H 0.111 0.889 41 H 0.272 0.728 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.029 0.971 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.064 0.936 48 H 0.097 0.903 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 23.664 -5.863 26.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C -0.198 4.198 4 C 0.043 3.957 5 H 0.070 0.930 6 C -0.086 4.086 7 N -0.285 5.285 8 C -0.004 4.004 9 C -0.155 4.155 10 C -0.077 4.077 11 C -0.224 4.224 12 C 0.064 3.936 13 O -0.140 6.140 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.181 1.181 20 H -0.196 1.196 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.067 4.067 24 C -0.065 4.065 25 C -0.188 4.188 26 C -0.012 4.012 27 O -0.318 6.318 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.159 0.841 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.134 0.866 43 H 0.155 0.845 44 H 0.047 0.953 45 H 0.086 0.914 46 H 0.109 0.891 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.467 23.193 -5.689 25.688 hybrid contribution 0.701 -0.873 0.349 1.173 sum -8.765 22.319 -5.340 24.566 Atomic orbital electron populations 1.21713 0.94767 1.01403 1.01847 1.21293 0.96690 0.97187 0.95602 1.21766 1.00936 0.95182 1.01932 1.21922 0.92360 0.95820 0.85602 0.93006 1.22476 0.95598 0.89457 1.01020 1.59061 1.27490 1.33648 1.08255 1.20811 0.88380 0.90536 1.00702 1.19587 1.04221 0.95688 0.95978 1.20836 0.96511 0.94079 0.96297 1.20412 1.09346 0.92152 1.00538 1.19935 0.94043 0.85447 0.94185 1.83938 1.67975 1.11846 1.50231 1.21772 1.38094 0.85491 1.03606 0.88190 1.26583 0.97007 0.99469 0.98971 1.70181 1.41943 1.18726 1.25139 0.84666 0.78995 0.75487 0.77197 1.18074 1.19610 1.18238 1.21253 1.08254 0.98371 0.98433 1.20887 0.95999 0.90556 0.99251 1.21195 0.96472 1.01118 0.87686 1.22049 0.96729 0.97628 1.02438 1.22386 0.97617 0.94832 0.86342 1.88208 1.56535 1.71631 1.15461 0.92981 0.91797 0.93466 0.89173 0.92370 0.91902 0.93057 0.93242 0.88102 0.88779 0.93238 0.84128 0.87132 0.91855 0.86574 0.84503 0.95328 0.91355 0.89146 0.91686 0.88508 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.02 71.98 0.65 -1.56 16 2 C -0.09 -1.35 2.58 -10.80 -0.03 -1.38 16 3 C -0.14 -1.87 8.81 71.98 0.63 -1.24 16 4 C 0.10 1.90 1.98 29.86 0.06 1.96 16 5 H 0.05 1.21 7.26 -2.39 -0.02 1.19 16 6 C 0.04 0.71 3.67 85.44 0.31 1.03 16 7 N -0.56 -12.09 4.03 -916.56 -3.69 -15.78 16 8 C 0.12 2.65 5.12 85.55 0.44 3.09 16 9 C -0.15 -4.62 4.85 -19.83 -0.10 -4.72 16 10 C -0.06 -1.92 7.87 22.25 0.18 -1.75 16 11 C -0.21 -8.71 9.99 22.39 0.22 -8.49 16 12 C 0.11 5.72 6.65 22.58 0.15 5.87 16 13 O -0.23 -14.18 9.76 -22.72 -0.22 -14.41 16 14 C -0.41 -24.33 9.49 67.92 0.64 -23.68 16 15 H 0.10 5.40 5.20 -2.91 -0.02 5.39 16 16 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 17 N -0.92 -57.06 13.67 21.61 0.30 -56.76 16 18 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 20 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 C -0.24 -10.66 9.17 22.39 0.21 -10.45 16 23 C -0.05 -1.66 9.69 22.25 0.22 -1.44 16 24 C 0.06 1.41 4.76 87.94 0.42 1.83 16 25 C -0.15 -3.03 5.66 30.33 0.17 -2.86 16 26 C 0.06 1.15 6.26 71.24 0.45 1.60 16 27 O -0.40 -8.22 9.13 -148.98 -1.36 -9.58 16 28 H 0.05 0.93 7.59 -2.39 -0.02 0.91 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.21 8.09 -2.39 -0.02 1.19 16 32 H 0.06 0.70 7.04 -2.39 -0.02 0.68 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.05 0.80 7.72 -2.39 -0.02 0.78 16 35 H 0.05 0.85 6.85 -2.39 -0.02 0.83 16 36 H 0.10 1.45 6.90 -2.39 -0.02 1.43 16 37 H 0.09 1.75 7.62 -2.39 -0.02 1.73 16 38 H 0.05 0.97 8.05 -2.39 -0.02 0.95 16 39 H 0.14 3.65 7.94 -2.91 -0.02 3.63 16 40 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 42 H 0.12 5.20 5.64 -2.91 -0.02 5.18 16 43 H 0.14 3.85 8.06 -2.92 -0.02 3.83 16 44 H 0.03 0.57 7.63 -2.39 -0.02 0.55 16 45 H 0.07 1.79 5.44 -2.39 -0.01 1.78 16 46 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 1.57 7.25 -2.39 -0.02 1.55 16 48 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 0.84 6.60 -2.39 -0.02 0.82 16 Total: -1.00 -69.80 376.52 3.06 -66.74 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.93 Total: 27.64 kcal Atomic # 6 Polarization: -48.13 SS G_CDS: 5.09 Total: -43.04 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -3.40 Total: -72.54 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -1.58 Total: -23.99 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -69.80 3.06 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292898175.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.260 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds