Wall clock time and date at job start Tue Mar 31 2020 12:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99995 * 2 1 4 4 C 1.52999 * 109.47611 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47498 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47131 * 55.00135 * 5 4 3 7 7 N 1.46502 * 109.46967 * 294.99689 * 5 4 3 8 8 C 1.34780 * 119.99831 * 154.99968 * 7 5 4 9 9 O 1.21589 * 119.99958 * 0.02562 * 8 7 5 10 10 C 1.47638 * 119.99753 * 180.02562 * 8 7 5 11 11 C 1.40008 * 119.90059 * 359.72237 * 10 8 7 12 12 C 1.36313 * 120.10842 * 179.76285 * 11 10 8 13 13 C 1.40885 * 119.89282 * 0.51759 * 12 11 10 14 14 C 1.41110 * 120.10358 * 179.72048 * 13 12 11 15 15 H 1.08000 * 119.99701 * 204.64803 * 14 13 12 16 16 C 1.40220 * 120.00244 * 24.64787 * 14 13 12 17 17 N 1.30646 * 120.00177 * 17.86569 * 16 14 13 18 18 Si 1.86802 * 120.00196 * 197.86861 * 16 14 13 19 19 H 1.48496 * 109.47101 * 89.99767 * 18 16 14 20 20 H 1.48503 * 109.47154 * 209.99848 * 18 16 14 21 21 H 1.48501 * 109.47021 * 329.99479 * 18 16 14 22 22 C 1.40890 * 119.79381 * 359.73473 * 13 12 11 23 23 C 1.36315 * 119.88932 * 0.02562 * 22 13 12 24 24 C 1.53002 * 109.47201 * 175.00146 * 5 4 3 25 25 C 1.52995 * 109.47201 * 180.02562 * 24 5 4 26 26 C 1.52999 * 109.47351 * 59.99650 * 24 5 4 27 27 C 1.53008 * 109.46637 * 299.99751 * 24 5 4 28 28 H 1.08998 * 109.47120 * 299.99929 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.00303 * 1 2 3 30 30 H 1.08996 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47381 * 59.99988 * 3 2 1 32 32 H 1.09005 * 109.46687 * 299.99827 * 3 2 1 33 33 H 1.09003 * 109.46966 * 59.99086 * 4 3 2 34 34 H 1.09002 * 109.46712 * 300.00388 * 4 3 2 35 35 H 0.97000 * 120.00263 * 335.00694 * 7 5 4 36 36 H 1.08008 * 119.94121 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.05379 * 180.23135 * 12 11 10 38 38 H 0.97003 * 120.00578 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.05931 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.94781 * 179.97438 * 23 22 13 41 41 H 1.09003 * 109.47131 * 59.99989 * 25 24 5 42 42 H 1.09003 * 109.47255 * 299.99756 * 25 24 5 43 43 H 1.08994 * 109.47329 * 179.97438 * 25 24 5 44 44 H 1.08994 * 109.47139 * 179.97438 * 26 24 5 45 45 H 1.09001 * 109.47053 * 300.00135 * 26 24 5 46 46 H 1.09004 * 109.46807 * 59.99845 * 26 24 5 47 47 H 1.08992 * 109.47117 * 299.99901 * 27 24 5 48 48 H 1.09001 * 109.46730 * 60.00506 * 27 24 5 49 49 H 1.09006 * 109.46443 * 179.97438 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7674 3.1544 0.8406 7 7 3.8225 3.2656 -1.2532 8 6 3.8019 4.6124 -1.3013 9 8 4.0620 5.2604 -0.3059 10 6 3.4636 5.3009 -2.5628 11 6 3.1702 4.5527 -3.7092 12 6 2.8526 5.1839 -4.8749 13 6 2.8305 6.5915 -4.9278 14 6 2.5080 7.2496 -6.1337 15 1 2.8590 8.2556 -6.3104 16 6 1.7320 6.5974 -7.1025 17 7 1.0221 5.5508 -6.7748 18 14 1.7133 7.2249 -8.8619 19 1 2.7918 6.5598 -9.6361 20 1 0.3988 6.9205 -9.4821 21 1 1.9343 8.6934 -8.8660 22 6 3.1316 7.3402 -3.7729 23 6 3.4433 6.7001 -2.6105 24 6 5.6780 2.4640 0.1238 25 6 6.3002 3.8617 0.1238 26 6 6.2259 1.6612 -1.0578 27 6 6.0280 1.7505 1.4312 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8891 35 1 3.6154 2.7487 -2.0474 36 1 3.1915 3.4736 -3.6688 37 1 2.6228 4.6058 -5.7578 38 1 0.4855 5.0993 -7.4450 39 1 3.1163 8.4195 -3.8086 40 1 3.6747 7.2731 -1.7247 41 1 5.9098 4.4332 0.9659 42 1 6.0508 4.3705 -0.8075 43 1 7.3832 3.7774 0.2133 44 1 7.3090 1.5772 -0.9690 45 1 5.7826 0.6654 -1.0573 46 1 5.9765 2.1695 -1.9893 47 1 5.6377 2.3224 2.2730 48 1 5.5847 0.7547 1.4316 49 1 7.1111 1.6657 1.5201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338141851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:28 Heat of formation + Delta-G solvation = -88.573567 kcal Electronic energy + Delta-G solvation = -27508.151426 eV Core-core repulsion = 23820.079389 eV Total energy + Delta-G solvation = -3688.072037 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.99154 -38.12114 -37.53338 -36.58477 -33.88564 -33.48396 -31.55822 -30.01324 -29.44416 -27.27369 -27.19521 -26.87756 -25.89258 -24.72464 -22.16350 -21.56960 -20.90416 -19.67202 -18.61401 -17.53261 -16.88712 -16.35494 -16.17844 -15.63919 -15.52308 -15.24585 -14.77651 -14.05921 -13.95053 -13.87222 -13.75692 -13.34895 -13.27787 -12.95740 -12.70897 -12.36102 -12.18461 -12.01380 -11.94678 -11.87936 -11.57967 -11.46648 -11.35407 -11.30568 -11.21816 -11.07165 -10.98439 -10.77654 -10.65284 -10.50318 -10.32551 -10.03500 -9.72674 -9.56820 -9.36505 -8.90223 -8.48085 -7.73227 -7.55045 -7.04748 -4.61467 2.23172 2.90878 2.94877 2.97081 3.02474 3.62557 3.72918 3.80661 3.87345 4.54436 4.81577 4.85196 4.97561 5.06595 5.12577 5.24964 5.28290 5.36733 5.46551 5.54689 5.56062 5.57256 5.65674 5.71974 5.82489 5.85845 5.94471 5.99527 6.03520 6.05533 6.17672 6.20344 6.23764 6.30798 6.34290 6.52201 6.74474 6.76792 6.81759 6.97554 7.06542 7.08662 7.12717 7.42513 7.64944 7.78746 7.85072 8.06309 8.26528 8.38995 8.62227 8.74323 9.11511 9.87260 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003333 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.704860 B = 8399.803342 C = 9615.639942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.128 4.128 5 C 0.162 3.838 6 H 0.085 0.915 7 N -0.735 5.735 8 C 0.573 3.427 9 O -0.569 6.569 10 C -0.284 4.284 11 C -0.063 4.063 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.772 5.772 18 Si 0.913 3.087 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.239 4.239 23 C -0.022 4.022 24 C -0.077 4.077 25 C -0.131 4.131 26 C -0.142 4.142 27 C -0.142 4.142 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.395 0.605 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.286 0.714 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.039 0.961 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.627 -10.293 7.919 13.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.166 4.166 5 C 0.057 3.943 6 H 0.103 0.897 7 N -0.388 5.388 8 C 0.368 3.632 9 O -0.451 6.451 10 C -0.289 4.289 11 C -0.082 4.082 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.146 4.146 17 N -0.395 5.395 18 Si 0.737 3.263 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.259 4.259 23 C -0.041 4.041 24 C -0.078 4.078 25 C -0.188 4.188 26 C -0.200 4.200 27 C -0.199 4.199 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.231 0.769 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.725 -10.170 8.533 13.552 hybrid contribution -0.516 0.157 -1.249 1.361 sum 2.209 -10.013 7.283 12.577 Atomic orbital electron populations 1.22723 0.81084 1.02465 1.00214 1.87822 1.19699 1.28384 1.95513 1.22578 0.93939 0.84288 1.00883 1.21917 0.93228 0.97230 1.04187 1.20761 0.93366 0.91500 0.88704 0.89690 1.46001 1.73218 1.07028 1.12543 1.18480 0.75025 0.80928 0.88727 1.90639 1.51478 1.65813 1.37170 1.18929 1.23082 0.93783 0.93075 1.20468 0.97852 0.96617 0.93296 1.20970 1.06565 0.94853 0.97352 1.17779 0.85984 0.92065 0.91622 1.19857 1.26489 1.01402 0.99409 0.89740 1.26086 0.93073 0.93991 1.01472 1.69742 1.17549 1.16122 1.36128 0.86216 0.78618 0.80653 0.80838 1.18929 1.20025 1.18281 1.20716 1.13843 0.98089 0.93233 1.20355 0.94317 0.92774 0.96681 1.20915 0.94907 0.96565 0.95428 1.21882 0.98407 0.94992 1.03547 1.21902 1.00372 0.99452 0.98246 1.21930 1.01277 1.00023 0.96703 0.94207 0.93837 0.89820 0.93356 0.92647 0.90386 0.89615 0.76924 0.89468 0.86281 0.90258 0.88489 0.88171 0.92052 0.91908 0.94153 0.93029 0.92698 0.92227 0.92626 0.92453 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.40 -4.97 10.70 -35.23 -0.38 -5.35 16 3 C 0.06 0.73 5.83 37.16 0.22 0.95 16 4 C -0.13 -1.45 4.40 -26.73 -0.12 -1.56 16 5 C 0.16 2.17 1.53 -67.93 -0.10 2.06 16 6 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 7 N -0.74 -11.49 3.60 -54.81 -0.20 -11.68 16 8 C 0.57 11.38 6.12 -12.42 -0.08 11.31 16 9 O -0.57 -12.45 13.44 5.29 0.07 -12.37 16 10 C -0.28 -6.27 5.89 -104.73 -0.62 -6.88 16 11 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 12 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 13 C 0.13 3.24 5.58 -106.80 -0.60 2.65 16 14 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.08 1.74 5.14 -17.31 -0.09 1.65 16 17 N -0.77 -18.35 10.95 55.56 0.61 -17.74 16 18 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 20 H -0.28 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 22 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 23 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 24 C -0.08 -0.96 0.62 -154.51 -0.10 -1.05 16 25 C -0.13 -1.96 7.00 37.16 0.26 -1.70 16 26 C -0.14 -1.65 7.97 37.16 0.30 -1.35 16 27 C -0.14 -1.46 8.13 37.16 0.30 -1.16 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 33 H 0.08 0.86 6.71 -51.93 -0.35 0.51 16 34 H 0.09 0.88 6.18 -51.93 -0.32 0.56 16 35 H 0.40 5.77 6.60 -40.82 -0.27 5.50 16 36 H 0.09 1.61 6.37 -52.48 -0.33 1.28 16 37 H 0.12 2.93 6.16 -52.49 -0.32 2.60 16 38 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 39 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 41 H 0.06 1.00 7.53 -51.93 -0.39 0.61 16 42 H 0.06 1.12 5.77 -51.93 -0.30 0.82 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.05 0.56 6.54 -51.93 -0.34 0.22 16 46 H 0.06 0.77 7.60 -51.93 -0.39 0.37 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.52 6.32 -51.93 -0.33 0.20 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -27.12 383.36 -8.37 -35.49 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.90 Total: 12.10 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -1.32 Total: -18.38 kcal Atomic # 7 Polarization: -29.83 SS G_CDS: 0.41 Total: -29.42 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.31 Total: -17.72 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.12 -8.37 -35.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338141851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.080 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds