Wall clock time and date at job start Tue Mar 31 2020 12:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99995 * 2 1 4 4 C 1.52999 * 109.47611 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47498 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.47131 * 55.00135 * 5 4 3 7 7 N 1.46502 * 109.46967 * 294.99689 * 5 4 3 8 8 C 1.34780 * 119.99831 * 154.99968 * 7 5 4 9 9 O 1.21589 * 119.99958 * 0.02562 * 8 7 5 10 10 C 1.47638 * 119.99753 * 180.02562 * 8 7 5 11 11 C 1.40008 * 119.90059 * 359.72237 * 10 8 7 12 12 C 1.36313 * 120.10842 * 179.76285 * 11 10 8 13 13 C 1.40885 * 119.89282 * 0.51759 * 12 11 10 14 14 C 1.41110 * 120.10358 * 179.72048 * 13 12 11 15 15 H 1.08000 * 119.99701 * 204.64803 * 14 13 12 16 16 C 1.40220 * 120.00244 * 24.64787 * 14 13 12 17 17 N 1.30646 * 120.00177 * 17.86569 * 16 14 13 18 18 Si 1.86802 * 120.00196 * 197.86861 * 16 14 13 19 19 H 1.48496 * 109.47101 * 89.99767 * 18 16 14 20 20 H 1.48503 * 109.47154 * 209.99848 * 18 16 14 21 21 H 1.48501 * 109.47021 * 329.99479 * 18 16 14 22 22 C 1.40890 * 119.79381 * 359.73473 * 13 12 11 23 23 C 1.36315 * 119.88932 * 0.02562 * 22 13 12 24 24 C 1.53002 * 109.47201 * 175.00146 * 5 4 3 25 25 C 1.52995 * 109.47201 * 180.02562 * 24 5 4 26 26 C 1.52999 * 109.47351 * 59.99650 * 24 5 4 27 27 C 1.53008 * 109.46637 * 299.99751 * 24 5 4 28 28 H 1.08998 * 109.47120 * 299.99929 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.00303 * 1 2 3 30 30 H 1.08996 * 109.46772 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47381 * 59.99988 * 3 2 1 32 32 H 1.09005 * 109.46687 * 299.99827 * 3 2 1 33 33 H 1.09003 * 109.46966 * 59.99086 * 4 3 2 34 34 H 1.09002 * 109.46712 * 300.00388 * 4 3 2 35 35 H 0.97000 * 120.00263 * 335.00694 * 7 5 4 36 36 H 1.08008 * 119.94121 * 0.02562 * 11 10 8 37 37 H 1.08001 * 120.05379 * 180.23135 * 12 11 10 38 38 H 0.97003 * 120.00578 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.05931 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.94781 * 179.97438 * 23 22 13 41 41 H 1.09003 * 109.47131 * 59.99989 * 25 24 5 42 42 H 1.09003 * 109.47255 * 299.99756 * 25 24 5 43 43 H 1.08994 * 109.47329 * 179.97438 * 25 24 5 44 44 H 1.08994 * 109.47139 * 179.97438 * 26 24 5 45 45 H 1.09001 * 109.47053 * 300.00135 * 26 24 5 46 46 H 1.09004 * 109.46807 * 59.99845 * 26 24 5 47 47 H 1.08992 * 109.47117 * 299.99901 * 27 24 5 48 48 H 1.09001 * 109.46730 * 60.00506 * 27 24 5 49 49 H 1.09006 * 109.46443 * 179.97438 * 27 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 6 4.1577 2.5825 -0.0013 6 1 3.7674 3.1544 0.8406 7 7 3.8225 3.2656 -1.2532 8 6 3.8019 4.6124 -1.3013 9 8 4.0620 5.2604 -0.3059 10 6 3.4636 5.3009 -2.5628 11 6 3.1702 4.5527 -3.7092 12 6 2.8526 5.1839 -4.8749 13 6 2.8305 6.5915 -4.9278 14 6 2.5080 7.2496 -6.1337 15 1 2.8590 8.2556 -6.3104 16 6 1.7320 6.5974 -7.1025 17 7 1.0221 5.5508 -6.7748 18 14 1.7133 7.2249 -8.8619 19 1 2.7918 6.5598 -9.6361 20 1 0.3988 6.9205 -9.4821 21 1 1.9343 8.6934 -8.8660 22 6 3.1316 7.3402 -3.7729 23 6 3.4433 6.7001 -2.6105 24 6 5.6780 2.4640 0.1238 25 6 6.3002 3.8617 0.1238 26 6 6.2259 1.6612 -1.0578 27 6 6.0280 1.7505 1.4312 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6886 1.8463 -0.8901 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8891 35 1 3.6154 2.7487 -2.0474 36 1 3.1915 3.4736 -3.6688 37 1 2.6228 4.6058 -5.7578 38 1 0.4855 5.0993 -7.4450 39 1 3.1163 8.4195 -3.8086 40 1 3.6747 7.2731 -1.7247 41 1 5.9098 4.4332 0.9659 42 1 6.0508 4.3705 -0.8075 43 1 7.3832 3.7774 0.2133 44 1 7.3090 1.5772 -0.9690 45 1 5.7826 0.6654 -1.0573 46 1 5.9765 2.1695 -1.9893 47 1 5.6377 2.3224 2.2730 48 1 5.5847 0.7547 1.4316 49 1 7.1111 1.6657 1.5201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338141851.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:27 Heat of formation + Delta-G solvation = -102.173423 kcal Electronic energy + Delta-G solvation = -27508.741159 eV Core-core repulsion = 23820.079389 eV Total energy + Delta-G solvation = -3688.661771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34973 -39.53536 -38.74954 -38.01599 -35.65543 -34.75993 -32.79293 -31.67809 -31.26928 -28.26591 -28.16543 -28.11133 -27.25918 -25.86618 -23.72495 -22.88426 -22.54030 -21.27613 -19.73226 -19.34567 -18.34090 -17.51682 -17.31310 -17.04452 -16.68073 -16.50134 -15.88264 -15.73757 -15.46093 -15.07891 -14.87209 -14.71247 -14.55125 -14.47275 -14.04274 -13.87646 -13.64001 -13.34223 -13.15752 -13.00674 -12.85698 -12.76219 -12.68197 -12.55525 -12.51647 -12.34542 -12.13826 -11.96351 -11.86887 -11.75478 -11.58438 -11.38905 -11.31203 -11.11642 -10.65636 -10.54497 -9.86046 -9.56225 -9.38379 -8.78969 -6.47822 0.47858 1.15421 1.38439 1.43402 1.52410 2.15210 2.20185 2.45491 2.72545 2.81463 3.69292 3.81508 3.83388 4.00640 4.08175 4.18773 4.28302 4.33444 4.36985 4.45435 4.48734 4.51226 4.53470 4.61384 4.71676 4.81309 4.83860 4.85546 4.92357 4.92552 5.01475 5.03424 5.09317 5.12107 5.14157 5.17876 5.25674 5.30945 5.35953 5.50220 5.55839 5.59007 5.74864 5.84789 5.96252 6.00266 6.17276 6.23924 6.54830 6.77088 6.78749 6.90247 7.55222 8.16243 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013345 B = 0.003333 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.704860 B = 8399.803342 C = 9615.639942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.407 6.407 3 C 0.060 3.940 4 C -0.117 4.117 5 C 0.162 3.838 6 H 0.067 0.933 7 N -0.718 5.718 8 C 0.577 3.423 9 O -0.592 6.592 10 C -0.290 4.290 11 C -0.054 4.054 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.477 4.477 15 H 0.083 0.917 16 C 0.040 3.960 17 N -0.799 5.799 18 Si 0.986 3.014 19 H -0.259 1.259 20 H -0.265 1.265 21 H -0.258 1.258 22 C -0.254 4.254 23 C -0.033 4.033 24 C -0.074 4.074 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.137 4.137 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.403 0.597 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.296 0.704 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.041 0.959 42 H 0.030 0.970 43 H 0.054 0.946 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.042 0.958 47 H 0.051 0.949 48 H 0.076 0.924 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.889 -12.606 7.909 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.326 6.326 3 C -0.017 4.017 4 C -0.154 4.154 5 C 0.058 3.942 6 H 0.086 0.914 7 N -0.370 5.370 8 C 0.370 3.630 9 O -0.475 6.475 10 C -0.294 4.294 11 C -0.073 4.073 12 C -0.217 4.217 13 C 0.099 3.901 14 C -0.505 4.505 15 H 0.101 0.899 16 C -0.179 4.179 17 N -0.423 5.423 18 Si 0.806 3.194 19 H -0.183 1.183 20 H -0.189 1.189 21 H -0.182 1.182 22 C -0.274 4.274 23 C -0.052 4.052 24 C -0.075 4.075 25 C -0.184 4.184 26 C -0.197 4.197 27 C -0.195 4.195 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.239 0.761 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.095 0.905 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.985 -12.522 8.541 15.449 hybrid contribution -0.605 0.834 -1.120 1.522 sum 2.379 -11.688 7.421 14.048 Atomic orbital electron populations 1.22910 0.79886 1.03891 1.00438 1.87794 1.21070 1.28203 1.95546 1.22545 0.94599 0.84349 1.00201 1.21841 0.92414 0.95622 1.05564 1.20909 0.94441 0.92222 0.86639 0.91445 1.45846 1.71652 1.05600 1.13855 1.18173 0.75041 0.82258 0.87534 1.90631 1.52563 1.66736 1.37606 1.19258 1.22089 0.93736 0.94353 1.20704 0.96167 0.98251 0.92192 1.20996 1.08046 0.94624 0.98028 1.18111 0.86784 0.92934 0.92291 1.20100 1.27971 1.01925 1.00478 0.89884 1.26886 0.91960 0.93972 1.05126 1.69760 1.17761 1.16938 1.37803 0.85130 0.79020 0.79900 0.75337 1.18332 1.18900 1.18209 1.20847 1.14592 0.98464 0.93468 1.20495 0.94550 0.93677 0.96483 1.20899 0.93692 0.95467 0.97460 1.21808 0.99471 0.96178 1.00906 1.21884 1.01154 0.99951 0.96700 1.21897 1.02165 1.00514 0.94897 0.93482 0.94142 0.87873 0.93494 0.94005 0.89395 0.87700 0.76079 0.86210 0.87013 0.89247 0.88093 0.88018 0.93937 0.95111 0.92740 0.92094 0.90700 0.93917 0.92944 0.90546 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 11.01 113.37 1.25 1.70 16 2 O -0.41 -9.34 10.70 -148.98 -1.59 -10.93 16 3 C 0.06 1.36 5.83 71.98 0.42 1.78 16 4 C -0.12 -2.33 4.40 30.59 0.13 -2.19 16 5 C 0.16 4.09 1.53 44.99 0.07 4.16 16 6 H 0.07 1.99 7.58 -2.39 -0.02 1.97 16 7 N -0.72 -21.82 3.60 -445.58 -1.60 -23.42 16 8 C 0.58 23.01 6.12 86.72 0.53 23.54 16 9 O -0.59 -26.34 13.44 -3.99 -0.05 -26.39 16 10 C -0.29 -12.96 5.89 -19.93 -0.12 -13.08 16 11 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 12 C -0.20 -9.74 8.63 22.47 0.19 -9.55 16 13 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 14 C -0.48 -24.27 9.04 23.46 0.21 -24.06 16 15 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 16 C 0.04 1.84 5.14 85.35 0.44 2.27 16 17 N -0.80 -38.22 10.95 21.87 0.24 -37.98 16 18 Si 0.99 34.95 29.60 68.60 2.03 36.98 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 21 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 22 C -0.25 -12.66 9.73 22.47 0.22 -12.44 16 23 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 24 C -0.07 -1.70 0.62 -52.18 -0.03 -1.73 16 25 C -0.13 -3.73 7.00 71.98 0.50 -3.23 16 26 C -0.14 -2.86 7.97 71.98 0.57 -2.29 16 27 C -0.14 -2.42 8.13 71.98 0.59 -1.84 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.04 1.06 7.75 -2.38 -0.02 1.04 16 33 H 0.09 1.63 6.71 -2.39 -0.02 1.61 16 34 H 0.10 1.76 6.18 -2.39 -0.01 1.74 16 35 H 0.40 11.13 6.60 -92.71 -0.61 10.52 16 36 H 0.12 4.28 6.37 -2.91 -0.02 4.26 16 37 H 0.11 5.61 6.16 -2.91 -0.02 5.59 16 38 H 0.30 12.59 8.29 -92.71 -0.77 11.82 16 39 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 40 H 0.10 4.73 7.63 -2.91 -0.02 4.70 16 41 H 0.04 1.39 7.53 -2.39 -0.02 1.37 16 42 H 0.03 1.09 5.77 -2.39 -0.01 1.07 16 43 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.07 1.24 6.54 -2.39 -0.02 1.23 16 46 H 0.04 1.02 7.60 -2.39 -0.02 1.00 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 1.08 6.32 -2.39 -0.02 1.06 16 49 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -60.08 383.36 4.63 -55.45 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: 0.33 Total: 41.55 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: 5.28 Total: -35.26 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -1.36 Total: -61.40 kcal Atomic # 8 Polarization: -35.67 SS G_CDS: -1.65 Total: -37.32 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -60.08 4.63 -55.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338141851.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.721 kcal (2) G-P(sol) polarization free energy of solvation -60.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds