Wall clock time and date at job start Tue Mar 31 2020 12:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35984 * 117.00017 * 2 1 4 4 C 1.38725 * 120.06485 * 359.97438 * 3 2 1 5 5 C 1.37948 * 119.90055 * 180.09936 * 4 3 2 6 6 C 1.39133 * 120.28821 * 359.97438 * 5 4 3 7 7 C 1.38350 * 119.78943 * 359.88409 * 6 5 4 8 8 C 1.38503 * 119.88000 * 0.20185 * 7 6 5 9 9 C 1.50778 * 121.41285 * 180.25356 * 7 6 5 10 10 H 1.09001 * 109.43541 * 102.28343 * 9 7 6 11 11 N 1.46900 * 109.43759 * 222.19614 * 9 7 6 12 12 C 1.46900 * 111.00347 * 204.49113 * 11 9 7 13 13 C 1.52996 * 109.46966 * 185.28964 * 12 11 9 14 14 C 1.53001 * 109.47408 * 59.99555 * 13 12 11 15 15 C 1.53006 * 109.46950 * 299.99652 * 13 12 11 16 16 C 1.53000 * 109.47162 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47388 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99754 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00143 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00315 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99886 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46664 * 90.00399 * 21 19 17 23 23 H 1.48498 * 109.47192 * 210.00502 * 21 19 17 24 24 H 1.48497 * 109.47026 * 330.00648 * 21 19 17 25 25 C 1.53070 * 109.69466 * 342.26437 * 9 7 6 26 26 C 1.53413 * 108.29498 * 48.19591 * 25 9 7 27 27 O 1.35955 * 118.42450 * 179.77455 * 6 5 4 28 28 H 1.09005 * 109.47465 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.47701 * 60.00087 * 1 2 3 30 30 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.05297 * 0.11370 * 4 3 2 32 32 H 1.07999 * 119.85809 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.86603 * 179.85892 * 8 7 6 34 34 H 1.00903 * 110.99349 * 328.44543 * 11 9 7 35 35 H 1.08994 * 109.47121 * 65.28514 * 12 11 9 36 36 H 1.08994 * 109.46558 * 305.28708 * 12 11 9 37 37 H 1.09005 * 109.47017 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47034 * 300.00138 * 14 13 12 39 39 H 1.08998 * 109.46679 * 60.00251 * 14 13 12 40 40 H 1.08995 * 109.47217 * 299.99896 * 15 13 12 41 41 H 1.09000 * 109.47022 * 60.00726 * 15 13 12 42 42 H 1.09005 * 109.46807 * 180.02562 * 15 13 12 43 43 H 1.08994 * 109.47154 * 59.99410 * 16 13 12 44 44 H 1.09008 * 109.46496 * 299.99735 * 16 13 12 45 45 H 0.96997 * 120.00042 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.69680 * 167.89409 * 25 9 7 47 47 H 1.08998 * 109.69818 * 288.49361 * 25 9 7 48 48 H 1.09001 * 109.68653 * 175.53100 * 26 25 9 49 49 H 1.08996 * 109.70882 * 54.98546 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2920 2.3759 -0.0005 5 6 1.9218 3.6032 -0.0026 6 6 3.3111 3.6791 -0.0036 7 6 4.0628 2.5176 -0.0001 8 6 3.4296 1.2858 0.0001 9 6 5.5701 2.5571 0.0046 10 1 5.9352 2.3490 1.0103 11 7 6.0886 1.5431 -0.9232 12 6 7.4506 1.1370 -0.5519 13 6 8.0049 0.1826 -1.6114 14 6 8.0353 0.8889 -2.9683 15 6 7.1102 -1.0554 -1.7008 16 6 9.4233 -0.2409 -1.2243 17 6 9.9695 -1.1805 -2.2682 18 1 9.3653 -1.4491 -3.1221 19 6 11.2403 -1.6981 -2.1327 20 7 11.7168 -2.5185 -3.0434 21 14 12.2851 -1.2340 -0.6553 22 1 12.0425 -2.2006 0.4456 23 1 13.7204 -1.2656 -1.0346 24 1 11.9227 0.1331 -0.2026 25 6 6.0512 3.9424 -0.4342 26 6 5.2690 4.9974 0.3587 27 8 3.8921 4.9082 -0.0104 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2134 2.3216 0.0009 32 1 1.3340 4.5092 -0.0026 33 1 4.0166 0.3794 0.0006 34 1 5.4727 0.7451 -0.9676 35 1 7.4289 0.6339 0.4147 36 1 8.0879 2.0189 -0.4882 37 1 8.4307 0.2090 -3.7230 38 1 7.0247 1.1901 -3.2438 39 1 8.6728 1.7707 -2.9046 40 1 7.0885 -1.5586 -0.7342 41 1 6.0995 -0.7540 -1.9764 42 1 7.5054 -1.7356 -2.4553 43 1 9.4012 -0.7442 -0.2578 44 1 10.0610 0.6409 -1.1604 45 1 12.6109 -2.8823 -2.9482 46 1 7.1168 4.0435 -0.2283 47 1 5.8684 4.0740 -1.5007 48 1 5.6489 5.9912 0.1217 49 1 5.3759 4.8084 1.4268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341543227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:28 Heat of formation + Delta-G solvation = -57.318376 kcal Electronic energy + Delta-G solvation = -27483.247490 eV Core-core repulsion = 23796.530780 eV Total energy + Delta-G solvation = -3686.716710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07433 -39.44777 -37.86824 -36.58944 -35.37472 -32.46836 -31.18219 -30.86674 -29.90690 -27.62447 -27.42160 -26.35039 -25.77005 -24.41926 -23.38118 -22.56644 -21.60698 -20.06605 -18.49620 -17.88173 -17.60444 -16.98806 -16.76014 -15.97344 -15.61970 -15.42828 -15.25216 -14.70413 -14.58144 -14.07523 -14.02731 -13.60065 -13.47299 -13.37794 -13.11886 -12.92148 -12.72533 -12.56409 -12.26591 -12.21240 -11.99972 -11.53983 -11.31717 -11.20318 -11.03333 -10.94618 -10.82483 -10.73732 -10.49928 -10.43406 -10.29264 -9.80745 -9.66402 -9.31370 -9.16569 -8.89365 -8.48640 -8.22380 -7.86200 -5.98750 -3.94838 1.00950 1.26647 3.02757 3.18141 3.32392 3.40217 3.43313 3.49189 4.25003 4.35916 4.49033 4.52904 4.64666 4.70715 4.81801 4.87671 4.91541 5.02619 5.13638 5.19648 5.25464 5.34171 5.35817 5.39500 5.56399 5.65660 5.68223 5.74371 5.75551 5.88813 6.04347 6.09513 6.15128 6.21781 6.25102 6.33634 6.43772 6.62559 6.70989 6.82080 7.08492 7.09784 7.14604 7.18695 7.27573 7.33343 7.34580 7.45896 7.57736 7.86612 8.61362 9.07534 9.64317 11.14426 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003094 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.380562 B = 9047.538763 C =10222.223303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.316 6.316 3 C 0.098 3.902 4 C -0.175 4.175 5 C -0.111 4.111 6 C 0.105 3.895 7 C -0.112 4.112 8 C -0.114 4.114 9 C 0.129 3.871 10 H 0.056 0.944 11 N -0.675 5.675 12 C 0.066 3.934 13 C -0.047 4.047 14 C -0.117 4.117 15 C -0.131 4.131 16 C -0.004 4.004 17 C -0.506 4.506 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.267 1.267 25 C -0.148 4.148 26 C 0.062 3.938 27 O -0.317 6.317 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.344 0.656 35 H 0.025 0.975 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.007 0.993 44 H 0.014 0.986 45 H 0.261 0.739 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.978 12.946 8.845 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.053 3.947 4 C -0.194 4.194 5 C -0.130 4.130 6 C 0.060 3.940 7 C -0.114 4.114 8 C -0.133 4.133 9 C 0.019 3.981 10 H 0.074 0.926 11 N -0.310 5.310 12 C -0.063 4.063 13 C -0.047 4.047 14 C -0.174 4.174 15 C -0.189 4.189 16 C -0.042 4.042 17 C -0.544 4.544 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.545 5.545 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.192 1.192 25 C -0.186 4.186 26 C -0.013 4.013 27 O -0.232 6.232 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.167 0.833 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.032 0.968 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.598 13.272 8.286 26.670 hybrid contribution 0.525 -0.469 1.634 1.779 sum -21.073 12.802 9.921 26.578 Atomic orbital electron populations 1.23033 0.78594 1.03921 1.01147 1.86103 1.21144 1.26592 1.89179 1.18758 0.92019 0.84299 0.99586 1.20991 0.99942 0.91461 1.06964 1.20334 0.91485 0.97939 1.03225 1.18514 0.91667 0.83819 1.00005 1.19688 0.95628 0.91976 1.04070 1.20071 0.91500 0.97632 1.04130 1.20274 0.88512 0.94078 0.95194 0.92587 1.60666 1.04327 1.15813 1.50152 1.22227 0.88504 0.98665 0.96899 1.20400 0.96517 0.93333 0.94472 1.21603 0.99788 0.99323 0.96714 1.21789 0.97318 0.98105 1.01672 1.19629 0.91436 0.96428 0.96687 1.21138 0.99809 1.25623 1.07849 0.90400 1.25017 0.97795 0.94843 0.95943 1.69909 1.17441 1.32397 1.34797 0.86850 0.79655 0.79492 0.83668 1.20529 1.21573 1.19163 1.22264 1.00817 0.93301 1.02223 1.23003 0.78874 1.00797 0.98632 1.85982 1.26695 1.26183 1.84298 0.92846 0.92699 0.88278 0.84933 0.84949 0.84980 0.83323 0.95722 0.91451 0.92152 0.93577 0.94314 0.94162 0.94536 0.91130 0.97423 0.96756 0.92903 0.89729 0.89217 0.87358 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.51 10.50 -19.69 -0.21 -3.71 16 3 C 0.10 1.14 6.68 -39.29 -0.26 0.88 16 4 C -0.17 -1.73 9.03 -39.51 -0.36 -2.08 16 5 C -0.11 -1.17 9.93 -39.36 -0.39 -1.56 16 6 C 0.11 1.27 6.47 -39.21 -0.25 1.02 16 7 C -0.11 -1.39 5.56 -104.45 -0.58 -1.97 16 8 C -0.11 -1.42 8.87 -39.37 -0.35 -1.77 16 9 C 0.13 1.59 2.65 -68.79 -0.18 1.41 16 10 H 0.06 0.68 7.87 -51.93 -0.41 0.28 16 11 N -0.68 -9.52 5.43 -107.88 -0.59 -10.11 16 12 C 0.07 1.05 4.42 -3.83 -0.02 1.03 16 13 C -0.05 -0.90 0.60 -154.51 -0.09 -0.99 16 14 C -0.12 -2.25 8.07 37.16 0.30 -1.95 16 15 C -0.13 -2.45 7.88 37.16 0.29 -2.15 16 16 C 0.00 -0.09 3.11 -27.88 -0.09 -0.18 16 17 C -0.51 -13.97 8.20 -34.44 -0.28 -14.26 16 18 H 0.08 2.30 5.92 -52.49 -0.31 1.99 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.91 -27.84 13.96 55.43 0.77 -27.07 16 21 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 25 C -0.15 -1.62 5.57 -26.48 -0.15 -1.77 16 26 C 0.06 0.58 7.03 37.37 0.26 0.85 16 27 O -0.32 -3.69 10.27 -19.60 -0.20 -3.89 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 0.94 6.31 -52.49 -0.33 0.61 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.63 6.60 -52.49 -0.35 1.28 16 34 H 0.34 4.85 4.47 -39.29 -0.18 4.67 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 1.07 7.52 -51.93 -0.39 0.68 16 37 H 0.06 1.30 6.62 -51.93 -0.34 0.95 16 38 H 0.05 0.81 7.60 -51.93 -0.39 0.42 16 39 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.04 0.59 6.70 -51.93 -0.35 0.24 16 42 H 0.07 1.48 6.62 -51.93 -0.34 1.14 16 43 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 44 H 0.01 0.34 7.20 -51.92 -0.37 -0.04 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.87 7.68 -51.93 -0.40 0.47 16 47 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 48 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -31.44 375.10 -8.39 -39.84 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.90 Total: 2.77 kcal Atomic # 6 Polarization: -19.31 SS G_CDS: -1.25 Total: -20.56 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.19 Total: -37.18 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.41 Total: -7.61 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.44 -8.39 -39.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341543227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.483 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds