Wall clock time and date at job start Tue Mar 31 2020 12:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.35984 * 117.00017 * 2 1 4 4 C 1.38725 * 120.06485 * 359.97438 * 3 2 1 5 5 C 1.37948 * 119.90055 * 180.09936 * 4 3 2 6 6 C 1.39133 * 120.28821 * 359.97438 * 5 4 3 7 7 C 1.38350 * 119.78943 * 359.88409 * 6 5 4 8 8 C 1.38503 * 119.88000 * 0.20185 * 7 6 5 9 9 C 1.50778 * 121.41285 * 180.25356 * 7 6 5 10 10 H 1.09001 * 109.43541 * 102.28343 * 9 7 6 11 11 N 1.46900 * 109.43759 * 222.19614 * 9 7 6 12 12 C 1.46900 * 111.00347 * 204.49113 * 11 9 7 13 13 C 1.52996 * 109.46966 * 185.28964 * 12 11 9 14 14 C 1.53001 * 109.47408 * 59.99555 * 13 12 11 15 15 C 1.53006 * 109.46950 * 299.99652 * 13 12 11 16 16 C 1.53000 * 109.47162 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47388 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99754 * 359.97438 * 17 16 13 19 19 C 1.37875 * 120.00143 * 180.02562 * 17 16 13 20 20 N 1.31515 * 120.00315 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 119.99886 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46664 * 90.00399 * 21 19 17 23 23 H 1.48498 * 109.47192 * 210.00502 * 21 19 17 24 24 H 1.48497 * 109.47026 * 330.00648 * 21 19 17 25 25 C 1.53070 * 109.69466 * 342.26437 * 9 7 6 26 26 C 1.53413 * 108.29498 * 48.19591 * 25 9 7 27 27 O 1.35955 * 118.42450 * 179.77455 * 6 5 4 28 28 H 1.09005 * 109.47465 * 300.00011 * 1 2 3 29 29 H 1.08999 * 109.47701 * 60.00087 * 1 2 3 30 30 H 1.09005 * 109.47135 * 180.02562 * 1 2 3 31 31 H 1.08001 * 120.05297 * 0.11370 * 4 3 2 32 32 H 1.07999 * 119.85809 * 180.02562 * 5 4 3 33 33 H 1.07996 * 119.86603 * 179.85892 * 8 7 6 34 34 H 1.00903 * 110.99349 * 328.44543 * 11 9 7 35 35 H 1.08994 * 109.47121 * 65.28514 * 12 11 9 36 36 H 1.08994 * 109.46558 * 305.28708 * 12 11 9 37 37 H 1.09005 * 109.47017 * 179.97438 * 14 13 12 38 38 H 1.08994 * 109.47034 * 300.00138 * 14 13 12 39 39 H 1.08998 * 109.46679 * 60.00251 * 14 13 12 40 40 H 1.08995 * 109.47217 * 299.99896 * 15 13 12 41 41 H 1.09000 * 109.47022 * 60.00726 * 15 13 12 42 42 H 1.09005 * 109.46807 * 180.02562 * 15 13 12 43 43 H 1.08994 * 109.47154 * 59.99410 * 16 13 12 44 44 H 1.09008 * 109.46496 * 299.99735 * 16 13 12 45 45 H 0.96997 * 120.00042 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.69680 * 167.89409 * 25 9 7 47 47 H 1.08998 * 109.69818 * 288.49361 * 25 9 7 48 48 H 1.09001 * 109.68653 * 175.53100 * 26 25 9 49 49 H 1.08996 * 109.70882 * 54.98546 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2920 2.3759 -0.0005 5 6 1.9218 3.6032 -0.0026 6 6 3.3111 3.6791 -0.0036 7 6 4.0628 2.5176 -0.0001 8 6 3.4296 1.2858 0.0001 9 6 5.5701 2.5571 0.0046 10 1 5.9352 2.3490 1.0103 11 7 6.0886 1.5431 -0.9232 12 6 7.4506 1.1370 -0.5519 13 6 8.0049 0.1826 -1.6114 14 6 8.0353 0.8889 -2.9683 15 6 7.1102 -1.0554 -1.7008 16 6 9.4233 -0.2409 -1.2243 17 6 9.9695 -1.1805 -2.2682 18 1 9.3653 -1.4491 -3.1221 19 6 11.2403 -1.6981 -2.1327 20 7 11.7168 -2.5185 -3.0434 21 14 12.2851 -1.2340 -0.6553 22 1 12.0425 -2.2006 0.4456 23 1 13.7204 -1.2656 -1.0346 24 1 11.9227 0.1331 -0.2026 25 6 6.0512 3.9424 -0.4342 26 6 5.2690 4.9974 0.3587 27 8 3.8921 4.9082 -0.0104 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 0.2134 2.3216 0.0009 32 1 1.3340 4.5092 -0.0026 33 1 4.0166 0.3794 0.0006 34 1 5.4727 0.7451 -0.9676 35 1 7.4289 0.6339 0.4147 36 1 8.0879 2.0189 -0.4882 37 1 8.4307 0.2090 -3.7230 38 1 7.0247 1.1901 -3.2438 39 1 8.6728 1.7707 -2.9046 40 1 7.0885 -1.5586 -0.7342 41 1 6.0995 -0.7540 -1.9764 42 1 7.5054 -1.7356 -2.4553 43 1 9.4012 -0.7442 -0.2578 44 1 10.0610 0.6409 -1.1604 45 1 12.6109 -2.8823 -2.9482 46 1 7.1168 4.0435 -0.2283 47 1 5.8684 4.0740 -1.5007 48 1 5.6489 5.9912 0.1217 49 1 5.3759 4.8084 1.4268 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341543227.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:27 Heat of formation + Delta-G solvation = -76.686102 kcal Electronic energy + Delta-G solvation = -27484.087338 eV Core-core repulsion = 23796.530780 eV Total energy + Delta-G solvation = -3687.556558 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90061 -40.21843 -39.23269 -37.42667 -36.56579 -34.47060 -32.37917 -31.66342 -30.75453 -29.50927 -28.05056 -27.90901 -27.01139 -25.47742 -24.40516 -23.79272 -22.89050 -20.88940 -19.70097 -18.95131 -18.83521 -18.55856 -17.78255 -16.70103 -16.63331 -16.44767 -16.16418 -16.03829 -15.70274 -15.53476 -15.18643 -15.06369 -14.48357 -14.30645 -14.19670 -14.11804 -13.97834 -13.89875 -13.58143 -13.29976 -13.00180 -12.83217 -12.78186 -12.51596 -12.25393 -12.23238 -12.17777 -11.98853 -11.90317 -11.74032 -11.53054 -11.37887 -11.21181 -10.98198 -10.80285 -10.69568 -10.06114 -9.30663 -8.69216 -8.21107 -6.21581 0.18681 0.43063 1.36115 1.37900 1.49012 2.31986 2.40006 2.45066 2.66666 3.13925 3.20068 3.51286 3.71463 3.85548 3.94992 4.08783 4.10743 4.17073 4.23831 4.26501 4.34856 4.39241 4.43727 4.48786 4.59013 4.66361 4.72246 4.75180 4.78093 4.87153 4.90139 4.93565 4.97037 5.02838 5.08487 5.17962 5.20153 5.29779 5.36560 5.37431 5.44435 5.52080 5.54467 5.62297 5.74464 5.81513 6.07739 6.34934 6.39595 6.44007 6.55357 6.85941 7.40828 8.95299 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.003094 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.380562 B = 9047.538763 C =10222.223303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.339 6.339 3 C 0.089 3.911 4 C -0.168 4.168 5 C -0.113 4.113 6 C 0.091 3.909 7 C -0.123 4.123 8 C -0.133 4.133 9 C 0.130 3.870 10 H 0.060 0.940 11 N -0.678 5.678 12 C 0.079 3.921 13 C -0.046 4.046 14 C -0.107 4.107 15 C -0.125 4.125 16 C -0.002 4.002 17 C -0.504 4.504 18 H 0.042 0.958 19 C 0.000 4.000 20 N -0.956 5.956 21 Si 0.942 3.058 22 H -0.271 1.271 23 H -0.289 1.289 24 H -0.247 1.247 25 C -0.145 4.145 26 C 0.062 3.938 27 O -0.327 6.327 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.125 0.875 34 H 0.344 0.656 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.262 0.738 46 H 0.092 0.908 47 H 0.073 0.927 48 H 0.132 0.868 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.628 15.055 10.940 30.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.044 3.956 4 C -0.186 4.186 5 C -0.132 4.132 6 C 0.045 3.955 7 C -0.125 4.125 8 C -0.152 4.152 9 C 0.020 3.980 10 H 0.077 0.923 11 N -0.312 5.312 12 C -0.050 4.050 13 C -0.047 4.047 14 C -0.164 4.164 15 C -0.182 4.182 16 C -0.040 4.040 17 C -0.542 4.542 18 H 0.061 0.939 19 C -0.196 4.196 20 N -0.598 5.598 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.215 1.215 24 H -0.170 1.170 25 C -0.183 4.183 26 C -0.013 4.013 27 O -0.241 6.241 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.179 0.821 32 H 0.170 0.830 33 H 0.143 0.857 34 H 0.166 0.834 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.092 0.908 48 H 0.150 0.850 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.275 15.397 10.390 29.778 hybrid contribution 0.896 -1.165 0.905 1.726 sum -22.379 14.233 11.295 28.827 Atomic orbital electron populations 1.23335 0.76472 1.05444 1.02371 1.86076 1.23454 1.26634 1.89153 1.18924 0.92017 0.85133 0.99566 1.21296 1.01328 0.90574 1.05438 1.20659 0.91191 0.98994 1.02318 1.18743 0.92424 0.83812 1.00485 1.19692 0.95566 0.92242 1.04977 1.20136 0.92260 0.97484 1.05327 1.20318 0.88774 0.94006 0.94867 0.92272 1.60623 1.03449 1.16117 1.50989 1.21962 0.89604 0.97949 0.95519 1.20330 0.94550 0.94347 0.95459 1.21487 1.00523 0.98481 0.95939 1.21696 0.98348 0.97334 1.00835 1.19585 0.93780 0.95296 0.95289 1.21430 0.99392 1.25676 1.07676 0.93935 1.25940 0.99487 0.94993 0.99143 1.70070 1.18057 1.34351 1.37312 0.85781 0.77519 0.80226 0.79833 1.19663 1.21525 1.17029 1.22229 1.01521 0.93053 1.01467 1.23185 0.77694 1.01455 0.98959 1.85969 1.27706 1.25995 1.84472 0.91375 0.91599 0.86807 0.82086 0.82958 0.85701 0.83413 0.95235 0.90788 0.95475 0.91944 0.94051 0.93644 0.92170 0.94507 0.96993 0.96582 0.92914 0.88961 0.90813 0.84984 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.08 10.50 -93.37 -0.98 -8.06 16 3 C 0.09 1.93 6.68 22.46 0.15 2.08 16 4 C -0.17 -2.91 9.03 22.32 0.20 -2.71 16 5 C -0.11 -2.11 9.93 22.42 0.22 -1.89 16 6 C 0.09 2.03 6.47 22.51 0.15 2.18 16 7 C -0.12 -2.92 5.56 -19.75 -0.11 -3.02 16 8 C -0.13 -3.20 8.87 22.40 0.20 -3.01 16 9 C 0.13 2.99 2.65 44.22 0.12 3.11 16 10 H 0.06 1.33 7.87 -2.39 -0.02 1.31 16 11 N -0.68 -18.16 5.43 -495.22 -2.69 -20.85 16 12 C 0.08 2.38 4.42 86.30 0.38 2.76 16 13 C -0.05 -1.76 0.60 -52.18 -0.03 -1.79 16 14 C -0.11 -4.13 8.07 71.98 0.58 -3.55 16 15 C -0.12 -4.66 7.88 71.98 0.57 -4.09 16 16 C 0.00 -0.08 3.11 29.85 0.09 0.02 16 17 C -0.50 -28.52 8.20 25.60 0.21 -28.31 16 18 H 0.04 2.65 5.92 -2.91 -0.02 2.64 16 19 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 20 N -0.96 -60.64 13.96 21.45 0.30 -60.34 16 21 Si 0.94 44.76 27.47 68.60 1.88 46.64 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 25 C -0.14 -2.90 5.57 30.76 0.17 -2.72 16 26 C 0.06 1.01 7.03 72.12 0.51 1.51 16 27 O -0.33 -6.93 10.27 -93.05 -0.96 -7.89 16 28 H 0.07 0.56 7.66 -2.38 -0.02 0.54 16 29 H 0.07 0.59 7.66 -2.39 -0.02 0.57 16 30 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.16 1.75 6.31 -2.91 -0.02 1.73 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 33 H 0.13 3.07 6.60 -2.91 -0.02 3.05 16 34 H 0.34 9.31 4.47 -89.69 -0.40 8.91 16 35 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 2.16 7.52 -2.39 -0.02 2.14 16 37 H 0.03 1.19 6.62 -2.38 -0.02 1.18 16 38 H 0.06 2.17 7.60 -2.39 -0.02 2.16 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.06 1.93 6.70 -2.39 -0.02 1.92 16 42 H 0.04 1.60 6.62 -2.38 -0.02 1.58 16 43 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 44 H 0.02 0.73 7.20 -2.38 -0.02 0.71 16 45 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 46 H 0.09 1.68 7.68 -2.39 -0.02 1.67 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.43 375.10 3.02 -66.41 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.49 Total: 21.76 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.98 Total: -37.67 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -2.39 Total: -81.19 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -1.94 Total: -15.94 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -69.43 3.02 -66.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341543227.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.277 kcal (2) G-P(sol) polarization free energy of solvation -69.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds