Wall clock time and date at job start Tue Mar 31 2020 12:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46784 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47245 * 299.99716 * 15 14 13 17 17 C 1.53002 * 109.46948 * 59.99959 * 15 14 13 18 18 C 1.53000 * 109.46632 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 15 14 20 20 H 1.07996 * 119.99751 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00163 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46926 * 59.99478 * 23 21 19 25 25 H 1.48495 * 109.47050 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46966 * 300.00066 * 23 21 19 27 27 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 29 29 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 30 30 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 32 32 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 35 35 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 36 36 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 38 38 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46801 * 299.99526 * 14 13 11 40 40 H 1.08992 * 109.46823 * 59.99976 * 14 13 11 41 41 H 1.09004 * 109.47108 * 60.00288 * 16 15 14 42 42 H 1.09000 * 109.46870 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47367 * 300.00590 * 16 15 14 44 44 H 1.09002 * 109.47070 * 59.99735 * 17 15 14 45 45 H 1.09000 * 109.46986 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47662 * 299.99787 * 17 15 14 47 47 H 1.09002 * 109.47398 * 300.00272 * 18 15 14 48 48 H 1.09001 * 109.46741 * 60.00169 * 18 15 14 49 49 H 0.97009 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 6 5.2446 -1.7399 -1.4360 12 8 5.6562 -2.1954 -0.3900 13 7 5.5234 -2.3629 -2.5982 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 5.1150 -4.3781 -4.6381 17 6 7.1996 -3.0199 -4.8670 18 6 7.3267 -5.3717 -4.0339 19 6 7.4926 -5.8635 -5.4487 20 1 7.0468 -5.3165 -6.2663 21 6 8.2133 -7.0119 -5.6993 22 7 8.7565 -7.6777 -4.7037 23 14 8.4183 -7.6220 -7.4529 24 1 9.1059 -6.5832 -8.2612 25 1 9.2295 -8.8658 -7.4526 26 1 7.0828 -7.9016 -8.0390 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.2128 2.3203 0.0097 31 1 1.3339 4.5113 -0.0024 32 1 3.7922 4.6381 -0.0116 33 1 5.1344 2.5752 -0.0097 34 1 5.2341 0.2273 0.4302 35 1 3.7489 -0.7402 0.5934 36 1 3.4412 -0.6828 -1.8664 37 1 4.9262 0.2847 -2.0297 38 1 5.1946 -1.9985 -3.4349 39 1 7.3033 -3.3853 -2.1673 40 1 5.8181 -4.3528 -2.0050 41 1 4.5200 -3.4648 -4.6383 42 1 5.2347 -4.7345 -5.6612 43 1 4.6102 -5.1404 -4.0448 44 1 8.1799 -2.8147 -4.4368 45 1 7.3195 -3.3760 -5.8902 46 1 6.6047 -2.1066 -4.8673 47 1 8.3070 -5.1661 -3.6038 48 1 6.8222 -6.1342 -3.4405 49 1 9.2633 -8.4859 -4.8800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345883869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:57 Heat of formation + Delta-G solvation = -79.233683 kcal Electronic energy + Delta-G solvation = -26309.945633 eV Core-core repulsion = 22622.278604 eV Total energy + Delta-G solvation = -3687.667029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.58283 -39.49170 -37.71367 -37.09559 -34.15870 -33.53047 -32.06283 -30.50664 -29.97733 -27.63360 -27.11650 -26.49296 -26.35979 -24.45419 -22.71067 -22.40612 -21.31854 -20.02246 -18.27423 -18.23197 -16.85325 -16.60332 -16.32291 -16.02187 -15.72343 -15.40721 -15.30055 -14.72616 -14.49854 -14.21470 -13.80931 -13.80344 -13.29812 -13.07748 -12.95461 -12.87622 -12.67977 -12.25062 -12.08523 -12.03784 -12.01409 -11.79846 -11.43144 -11.13128 -11.02250 -10.99537 -10.95397 -10.86087 -10.61389 -10.37921 -10.25245 -9.85365 -9.71168 -9.19272 -9.07595 -8.91182 -8.64777 -8.40769 -8.34480 -5.98557 -3.99890 1.01891 1.15436 2.91932 3.00311 3.32692 3.38035 3.38493 3.40645 3.60996 4.44462 4.46538 4.51895 4.71836 4.77815 4.82210 4.92964 5.01152 5.06161 5.17827 5.18267 5.29197 5.35885 5.36703 5.52091 5.62413 5.65115 5.68728 5.76938 5.77901 6.05090 6.14424 6.19619 6.20404 6.25655 6.31358 6.33244 6.42483 6.51123 6.61579 6.64654 6.81793 7.08421 7.09278 7.10818 7.15327 7.65515 7.78300 7.83016 8.00182 8.41764 8.52920 9.04678 9.62973 11.12822 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.002095 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.240687 B =13361.678858 C =13570.100734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.130 3.870 4 C -0.209 4.209 5 C -0.087 4.087 6 C -0.156 4.156 7 C -0.079 4.079 8 C -0.111 4.111 9 C -0.055 4.055 10 C -0.132 4.132 11 C 0.507 3.493 12 O -0.547 6.547 13 N -0.723 5.723 14 C 0.128 3.872 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.036 3.964 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.055 3.945 22 N -0.895 5.895 23 Si 0.889 3.111 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.278 1.278 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.398 0.602 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.029 0.971 42 H 0.066 0.934 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.066 0.934 46 H 0.029 0.971 47 H 0.018 0.982 48 H 0.018 0.982 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.191 22.654 7.998 28.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.085 3.915 4 C -0.228 4.228 5 C -0.105 4.105 6 C -0.175 4.175 7 C -0.097 4.097 8 C -0.112 4.112 9 C -0.093 4.093 10 C -0.173 4.173 11 C 0.293 3.707 12 O -0.425 6.425 13 N -0.375 5.375 14 C 0.005 3.995 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.002 4.002 19 C -0.549 4.549 20 H 0.077 0.923 21 C -0.146 4.146 22 N -0.534 5.534 23 Si 0.718 3.282 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.203 1.203 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.144 0.856 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.085 0.915 46 H 0.048 0.952 47 H 0.036 0.964 48 H 0.036 0.964 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.698 21.944 8.786 28.375 hybrid contribution -0.314 -0.079 -1.408 1.445 sum -16.013 21.864 7.378 28.087 Atomic orbital electron populations 1.23072 0.78482 1.04130 1.01154 1.86134 1.21189 1.26614 1.88397 1.18904 0.91848 0.84304 0.96482 1.21227 0.99961 0.92425 1.09144 1.20919 0.94733 0.96879 0.97964 1.21056 0.93910 0.98420 1.04082 1.20970 1.00101 0.90987 0.97603 1.19345 0.90531 0.96069 1.05238 1.20139 0.99607 0.93723 0.95807 1.21610 1.00955 0.95661 0.99030 1.20629 0.80577 0.85605 0.83884 1.90692 1.53348 1.66989 1.31511 1.46237 1.54731 1.27799 1.08736 1.21604 0.94669 0.84738 0.98482 1.20899 0.96721 0.98447 0.91221 1.21758 0.95403 0.98994 1.02254 1.21759 0.99119 0.96053 1.01481 1.19089 0.94138 0.89516 0.97409 1.21145 1.32496 1.08649 0.92654 0.92333 1.25022 0.95893 0.96908 0.96736 1.69961 1.35090 1.17586 1.30742 0.86702 0.78072 0.78154 0.85311 1.20344 1.21416 1.20346 0.88099 0.92769 0.92684 0.85590 0.85994 0.85929 0.85214 0.90293 0.89812 0.88984 0.89240 0.76742 0.91924 0.91937 0.95233 0.91481 0.93398 0.93392 0.91477 0.95234 0.96360 0.96362 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.17 9.64 -19.42 -0.19 -3.36 16 3 C 0.13 1.32 6.66 -39.22 -0.26 1.05 16 4 C -0.21 -1.74 9.04 -39.43 -0.36 -2.10 16 5 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 6 C -0.16 -1.22 10.04 -39.56 -0.40 -1.62 16 7 C -0.08 -0.69 9.68 -39.61 -0.38 -1.08 16 8 C -0.11 -1.15 5.15 -104.47 -0.54 -1.68 16 9 C -0.06 -0.63 4.35 -27.88 -0.12 -0.76 16 10 C -0.13 -1.48 5.68 -27.89 -0.16 -1.64 16 11 C 0.51 7.66 7.83 -10.99 -0.09 7.57 16 12 O -0.55 -10.46 15.98 5.55 0.09 -10.37 16 13 N -0.72 -10.69 4.96 -60.29 -0.30 -10.99 16 14 C 0.13 2.31 4.56 -4.04 -0.02 2.29 16 15 C -0.07 -1.39 0.54 -154.51 -0.08 -1.47 16 16 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 17 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 18 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 19 C -0.51 -13.63 7.65 -34.44 -0.26 -13.89 16 20 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 21 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 29 H 0.05 0.29 7.67 -51.93 -0.40 -0.11 16 30 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 35 H 0.08 1.11 7.66 -51.93 -0.40 0.71 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.95 6.16 -40.82 -0.25 4.70 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.03 0.42 6.86 -51.93 -0.36 0.07 16 42 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.07 1.27 6.61 -51.93 -0.34 0.93 16 46 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -32.41 393.20 -8.54 -40.95 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.10 Total: 2.27 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -1.68 Total: -14.86 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.44 Total: -36.79 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.10 Total: -13.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.41 -8.54 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.288 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds