Wall clock time and date at job start Tue Mar 31 2020 12:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.38749 * 120.05764 * 0.24762 * 3 2 1 5 5 C 1.38124 * 119.94616 * 180.32030 * 4 3 2 6 6 C 1.38294 * 120.04986 * 359.68533 * 5 4 3 7 7 C 1.38236 * 120.11395 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05848 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.03133 * 179.97438 * 8 7 6 10 10 C 1.52997 * 109.47212 * 265.00010 * 9 8 7 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 8 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46784 * 179.97438 * 14 13 11 16 16 C 1.52996 * 109.47245 * 299.99716 * 15 14 13 17 17 C 1.53002 * 109.46948 * 59.99959 * 15 14 13 18 18 C 1.53000 * 109.46632 * 179.97438 * 15 14 13 19 19 C 1.50703 * 109.46912 * 180.02562 * 18 15 14 20 20 H 1.07996 * 119.99751 * 0.02562 * 19 18 15 21 21 C 1.37877 * 120.00001 * 180.02562 * 19 18 15 22 22 N 1.31516 * 119.99659 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00163 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46926 * 59.99478 * 23 21 19 25 25 H 1.48495 * 109.47050 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.46966 * 300.00066 * 23 21 19 27 27 H 1.08998 * 109.47124 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47142 * 300.00353 * 1 2 3 29 29 H 1.09006 * 109.47170 * 60.00300 * 1 2 3 30 30 H 1.08002 * 120.03011 * 0.02562 * 4 3 2 31 31 H 1.07994 * 119.97736 * 179.70050 * 5 4 3 32 32 H 1.08004 * 119.94098 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.97210 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47060 * 25.00065 * 9 8 7 35 35 H 1.09001 * 109.47380 * 145.00153 * 9 8 7 36 36 H 1.09002 * 109.47153 * 299.99998 * 10 9 8 37 37 H 1.08998 * 109.47533 * 59.99628 * 10 9 8 38 38 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 39 39 H 1.09002 * 109.46801 * 299.99526 * 14 13 11 40 40 H 1.08992 * 109.46823 * 59.99976 * 14 13 11 41 41 H 1.09004 * 109.47108 * 60.00288 * 16 15 14 42 42 H 1.09000 * 109.46870 * 180.02562 * 16 15 14 43 43 H 1.09001 * 109.47367 * 300.00590 * 16 15 14 44 44 H 1.09002 * 109.47070 * 59.99735 * 17 15 14 45 45 H 1.09000 * 109.46986 * 179.97438 * 17 15 14 46 46 H 1.08993 * 109.47662 * 299.99787 * 17 15 14 47 47 H 1.09002 * 109.47398 * 300.00272 * 18 15 14 48 48 H 1.09001 * 109.46741 * 60.00169 * 18 15 14 49 49 H 0.97009 * 119.99646 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3019 3.6757 -0.0068 7 6 4.0559 2.5171 -0.0060 8 6 3.4311 1.2849 -0.0003 9 6 4.2537 0.0222 0.0000 10 6 4.4215 -0.4776 -1.4362 11 6 5.2446 -1.7399 -1.4360 12 8 5.6562 -2.1954 -0.3900 13 7 5.5234 -2.3629 -2.5982 14 6 6.3232 -3.5904 -2.5979 15 6 6.4910 -4.0901 -4.0342 16 6 5.1150 -4.3781 -4.6381 17 6 7.1996 -3.0199 -4.8670 18 6 7.3267 -5.3717 -4.0339 19 6 7.4926 -5.8635 -5.4487 20 1 7.0468 -5.3165 -6.2663 21 6 8.2133 -7.0119 -5.6993 22 7 8.7565 -7.6777 -4.7037 23 14 8.4183 -7.6220 -7.4529 24 1 9.1059 -6.5832 -8.2612 25 1 9.2295 -8.8658 -7.4526 26 1 7.0828 -7.9016 -8.0390 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 0.2128 2.3203 0.0097 31 1 1.3339 4.5113 -0.0024 32 1 3.7922 4.6381 -0.0116 33 1 5.1344 2.5752 -0.0097 34 1 5.2341 0.2273 0.4302 35 1 3.7489 -0.7402 0.5934 36 1 3.4412 -0.6828 -1.8664 37 1 4.9262 0.2847 -2.0297 38 1 5.1946 -1.9985 -3.4349 39 1 7.3033 -3.3853 -2.1673 40 1 5.8181 -4.3528 -2.0050 41 1 4.5200 -3.4648 -4.6383 42 1 5.2347 -4.7345 -5.6612 43 1 4.6102 -5.1404 -4.0448 44 1 8.1799 -2.8147 -4.4368 45 1 7.3195 -3.3760 -5.8902 46 1 6.6047 -2.1066 -4.8673 47 1 8.3070 -5.1661 -3.6038 48 1 6.8222 -6.1342 -3.4405 49 1 9.2633 -8.4859 -4.8800 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345883869.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:56 Heat of formation + Delta-G solvation = -98.084663 kcal Electronic energy + Delta-G solvation = -26310.763073 eV Core-core repulsion = 22622.278604 eV Total energy + Delta-G solvation = -3688.484469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.29214 -40.73122 -38.70786 -38.28341 -35.22933 -34.99381 -33.89831 -31.16825 -30.74789 -29.08884 -28.17981 -27.95490 -27.66289 -25.66539 -24.42217 -23.00023 -22.11937 -21.25832 -19.80959 -18.88622 -18.36768 -18.01224 -17.31281 -16.84426 -16.59071 -16.54863 -16.42203 -16.32094 -15.44327 -15.32552 -15.05298 -14.70657 -14.68916 -14.33200 -14.14205 -13.93071 -13.89757 -13.64327 -13.53764 -12.84935 -12.82862 -12.78038 -12.73853 -12.58213 -12.45190 -12.32180 -12.21638 -12.00006 -11.99306 -11.83040 -11.64389 -11.52827 -11.16375 -10.89577 -10.73888 -10.50351 -10.02896 -9.76137 -9.05248 -8.13361 -6.21452 0.39522 0.53544 1.42748 1.45112 1.52326 1.70001 2.27811 2.44545 2.45992 2.85799 3.20705 3.70080 3.89890 3.95857 4.01491 4.08589 4.12562 4.23627 4.24129 4.33586 4.36870 4.41101 4.54442 4.55191 4.66481 4.70403 4.73096 4.75382 4.78688 4.83252 4.94399 4.97686 5.08761 5.11867 5.12993 5.27118 5.41837 5.45397 5.49056 5.50460 5.54310 5.57485 5.58977 5.66052 5.80824 5.90166 5.92768 6.30598 6.51075 6.63433 6.93520 7.32219 7.46172 8.98941 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.026132 B = 0.002095 C = 0.002063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.240687 B =13361.678858 C =13570.100734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.213 4.213 5 C -0.087 4.087 6 C -0.160 4.160 7 C -0.085 4.085 8 C -0.131 4.131 9 C -0.049 4.049 10 C -0.118 4.118 11 C 0.506 3.494 12 O -0.592 6.592 13 N -0.711 5.711 14 C 0.141 3.859 15 C -0.064 4.064 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.039 3.961 19 C -0.513 4.513 20 H 0.073 0.927 21 C -0.007 4.007 22 N -0.939 5.939 23 Si 0.960 3.040 24 H -0.266 1.266 25 H -0.292 1.292 26 H -0.266 1.266 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.413 0.587 39 H 0.044 0.956 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.056 0.944 46 H 0.071 0.929 47 H -0.015 1.015 48 H -0.016 1.016 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.115 25.700 6.110 32.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.068 3.932 4 C -0.232 4.232 5 C -0.105 4.105 6 C -0.178 4.178 7 C -0.103 4.103 8 C -0.131 4.131 9 C -0.086 4.086 10 C -0.158 4.158 11 C 0.294 3.706 12 O -0.473 6.473 13 N -0.363 5.363 14 C 0.017 3.983 15 C -0.065 4.065 16 C -0.179 4.179 17 C -0.179 4.179 18 C 0.002 3.998 19 C -0.551 4.551 20 H 0.091 0.909 21 C -0.204 4.204 22 N -0.580 5.580 23 Si 0.785 3.215 24 H -0.191 1.191 25 H -0.218 1.218 26 H -0.191 1.191 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.162 0.838 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.124 0.876 37 H 0.136 0.864 38 H 0.252 0.748 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.003 0.997 48 H 0.003 0.997 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.655 25.026 6.865 31.386 hybrid contribution 0.244 -0.986 -0.729 1.250 sum -17.412 24.040 6.136 30.310 Atomic orbital electron populations 1.23292 0.76840 1.05117 1.02261 1.86096 1.23073 1.27177 1.88600 1.19106 0.92013 0.84889 0.97144 1.21491 1.00956 0.92116 1.08623 1.21297 0.95006 0.97578 0.96622 1.21367 0.94221 0.98950 1.03231 1.21163 1.00866 0.90858 0.97406 1.19311 0.90782 0.95818 1.07214 1.19986 0.99129 0.93964 0.95564 1.21585 1.00899 0.93830 0.99452 1.21371 0.79972 0.86300 0.82938 1.90680 1.55127 1.68345 1.33171 1.46026 1.54099 1.26514 1.09702 1.21185 0.94112 0.85760 0.97270 1.20702 0.97018 0.96316 0.92423 1.21695 0.94550 1.00672 1.00969 1.21695 0.99167 0.96998 1.00014 1.18978 0.93147 0.91630 0.96082 1.21557 1.31536 1.08430 0.93622 0.90872 1.25985 0.95850 0.97444 1.01131 1.70127 1.36404 1.18207 1.33262 0.85569 0.78404 0.77480 0.80000 1.19084 1.21761 1.19115 0.87305 0.91765 0.91392 0.83778 0.83454 0.83766 0.84205 0.91121 0.92421 0.87601 0.86436 0.74844 0.93768 0.93997 0.91082 0.92493 0.94598 0.94473 0.92526 0.91010 0.99662 0.99747 0.93195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.63 9.64 -92.42 -0.89 -7.52 16 3 C 0.11 2.16 6.66 22.51 0.15 2.31 16 4 C -0.21 -3.07 9.04 22.36 0.20 -2.87 16 5 C -0.09 -1.06 10.04 22.26 0.22 -0.84 16 6 C -0.16 -2.05 10.04 22.28 0.22 -1.83 16 7 C -0.08 -1.35 9.68 22.25 0.22 -1.13 16 8 C -0.13 -2.56 5.15 -19.77 -0.10 -2.67 16 9 C -0.05 -1.11 4.35 29.85 0.13 -0.98 16 10 C -0.12 -2.44 5.68 29.85 0.17 -2.27 16 11 C 0.51 14.95 7.83 87.66 0.69 15.64 16 12 O -0.59 -23.24 15.98 -3.05 -0.05 -23.29 16 13 N -0.71 -19.97 4.96 -463.05 -2.30 -22.27 16 14 C 0.14 5.19 4.56 86.38 0.39 5.58 16 15 C -0.06 -2.45 0.54 -52.18 -0.03 -2.48 16 16 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 17 C -0.12 -4.08 8.05 71.98 0.58 -3.50 16 18 C 0.04 2.02 4.04 29.85 0.12 2.15 16 19 C -0.51 -27.69 7.65 25.60 0.20 -27.49 16 20 H 0.07 3.67 5.68 -2.91 -0.02 3.65 16 21 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 22 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 23 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 0.57 7.65 -2.39 -0.02 0.55 16 29 H 0.07 0.57 7.67 -2.38 -0.02 0.55 16 30 H 0.14 1.42 6.30 -2.91 -0.02 1.40 16 31 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 32 H 0.14 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.07 1.68 8.01 -2.39 -0.02 1.66 16 35 H 0.06 1.60 7.66 -2.39 -0.02 1.58 16 36 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 8.89 6.16 -92.71 -0.57 8.31 16 39 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 1.81 6.86 -2.38 -0.02 1.79 16 42 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.06 2.03 6.61 -2.39 -0.02 2.01 16 46 H 0.07 1.80 6.86 -2.39 -0.02 1.78 16 47 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 49 H 0.26 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -73.78 393.20 4.75 -69.03 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.36 Total: 18.17 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 5.31 Total: -22.56 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -2.01 Total: -79.62 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.94 Total: -30.81 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.78 4.75 -69.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345883869.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.051 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds