Wall clock time and date at job start Tue Mar 31 2020 12:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99741 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46986 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47114 * 300.00283 * 13 12 11 15 15 C 1.53004 * 109.47174 * 60.00117 * 13 12 11 16 16 C 1.52996 * 109.47213 * 180.02562 * 13 12 11 17 17 C 1.50706 * 109.47456 * 179.97438 * 16 13 12 18 18 H 1.08005 * 119.99459 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00033 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00528 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46753 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47352 * 119.99621 * 21 19 17 24 24 H 1.48501 * 109.46868 * 240.00178 * 21 19 17 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 29 29 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 0.96998 * 119.99578 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47710 * 300.00483 * 12 11 9 38 38 H 1.09000 * 109.46883 * 60.00527 * 12 11 9 39 39 H 1.09002 * 109.47046 * 60.00040 * 14 13 12 40 40 H 1.08999 * 109.46951 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47119 * 299.99485 * 14 13 12 42 42 H 1.09000 * 109.46579 * 60.00187 * 15 13 12 43 43 H 1.09003 * 109.46739 * 179.97438 * 15 13 12 44 44 H 1.08991 * 109.46590 * 300.00352 * 15 13 12 45 45 H 1.09008 * 109.47046 * 299.99946 * 16 13 12 46 46 H 1.09003 * 109.47659 * 60.00123 * 16 13 12 47 47 H 0.96998 * 120.00218 * 180.02562 * 20 19 17 48 48 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 49 49 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9003 6.8177 -1.4382 10 8 5.1762 7.3568 -0.3874 11 7 5.2061 7.4193 -2.6049 12 6 5.8701 8.7251 -2.6038 13 6 6.1010 9.1811 -4.0459 14 6 6.9833 8.1608 -4.7683 15 6 4.7562 9.2934 -4.7668 16 6 6.7951 10.5445 -4.0447 17 6 7.0231 10.9934 -5.4652 18 1 6.7052 10.3684 -6.2866 19 6 7.6376 12.2019 -5.7160 20 7 8.0243 12.9632 -4.7158 21 14 7.9196 12.7586 -7.4767 22 1 7.3964 11.7296 -8.4109 23 1 7.2128 14.0437 -7.7088 24 1 9.3744 12.9444 -7.7101 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 4.9857 6.9879 -3.4453 37 1 5.2414 9.4520 -2.0895 38 1 6.8280 8.6451 -2.0898 39 1 6.4891 7.1892 -4.7691 40 1 7.1474 8.4855 -5.7958 41 1 7.9414 8.0808 -4.2547 42 1 4.1277 10.0203 -4.2521 43 1 4.9207 9.6187 -5.7941 44 1 4.2622 8.3219 -4.7675 45 1 6.1669 11.2716 -3.5299 46 1 7.7532 10.4642 -3.5313 47 1 8.4563 13.8135 -4.8923 48 1 1.3340 4.5114 0.0143 49 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345918230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:00 Heat of formation + Delta-G solvation = -81.001139 kcal Electronic energy + Delta-G solvation = -25720.476445 eV Core-core repulsion = 22032.732773 eV Total energy + Delta-G solvation = -3687.743672 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49760 -39.63090 -38.06673 -37.09840 -33.67295 -33.57982 -32.07852 -31.39570 -29.66452 -27.80195 -27.10113 -26.52134 -26.23803 -24.25577 -22.96542 -22.66648 -21.15007 -20.07722 -18.49741 -18.27797 -16.92168 -16.65043 -16.35132 -16.10884 -15.56165 -15.41753 -15.38058 -14.61424 -14.49319 -14.30410 -13.93727 -13.71219 -13.61123 -13.26239 -12.98382 -12.92877 -12.75288 -12.37880 -12.26940 -12.07786 -12.06300 -11.59547 -11.33690 -11.23404 -11.15103 -11.03325 -10.96090 -10.84375 -10.65437 -10.41145 -10.24875 -9.88654 -9.76159 -9.30655 -9.16912 -8.92053 -8.70483 -8.37582 -8.37059 -6.00788 -4.02140 1.03723 1.10349 2.84540 2.90744 3.29449 3.35165 3.37746 3.40039 3.56835 4.43935 4.44434 4.54260 4.61034 4.68866 4.72522 4.89783 4.94392 5.03222 5.06833 5.15974 5.20714 5.34745 5.35083 5.46655 5.55977 5.61243 5.64228 5.74466 5.80726 5.95055 6.03394 6.05635 6.16416 6.22178 6.29128 6.38775 6.40672 6.46128 6.57434 6.62091 6.77307 7.04010 7.05671 7.06542 7.12326 7.63440 7.75609 7.76909 7.98033 8.39305 8.46230 9.02938 9.61144 11.10650 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.001799 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.386157 B =15562.908353 C =15863.523103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.150 4.150 5 C -0.076 4.076 6 C -0.116 4.116 7 C -0.061 4.061 8 C -0.135 4.135 9 C 0.505 3.495 10 O -0.548 6.548 11 N -0.723 5.723 12 C 0.128 3.872 13 C -0.073 4.073 14 C -0.127 4.127 15 C -0.127 4.127 16 C 0.035 3.965 17 C -0.511 4.511 18 H 0.060 0.940 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.076 4.076 26 C -0.206 4.206 27 H 0.099 0.901 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.129 0.871 31 H 0.130 0.870 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.398 0.602 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.067 0.933 44 H 0.029 0.971 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.259 0.741 48 H 0.126 0.874 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -24.575 7.999 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.168 4.168 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.098 4.098 8 C -0.175 4.175 9 C 0.291 3.709 10 O -0.426 6.426 11 N -0.374 5.374 12 C 0.005 3.995 13 C -0.073 4.073 14 C -0.184 4.184 15 C -0.184 4.184 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.078 0.922 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.094 4.094 26 C -0.225 4.225 27 H 0.117 0.883 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.036 0.964 46 H 0.037 0.963 47 H 0.069 0.931 48 H 0.144 0.856 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.887 -24.198 8.785 29.250 hybrid contribution -0.191 0.389 -1.409 1.474 sum -14.077 -23.809 7.376 28.626 Atomic orbital electron populations 1.23047 0.78410 1.03907 1.01397 1.86064 1.21381 1.27086 1.88843 1.19055 0.92426 0.84107 0.97025 1.20432 0.91338 0.98701 1.06351 1.20926 1.00023 0.90924 0.97525 1.19876 0.93544 0.95328 1.02843 1.20266 1.01470 0.92588 0.95500 1.21667 1.01963 0.94881 0.99036 1.20645 0.79147 0.87115 0.83993 1.90698 1.54166 1.66378 1.31318 1.46245 1.60905 1.22077 1.08196 1.21612 0.96796 0.82616 0.98505 1.20907 0.96123 0.99149 0.91170 1.21762 0.98740 0.95983 1.01935 1.21760 0.95908 0.98804 1.01949 1.19098 0.95155 0.88487 0.97462 1.21226 1.38065 1.03412 0.92212 0.92200 1.25019 0.95902 0.96872 0.96753 1.69974 1.40899 1.12035 1.30448 0.86590 0.77814 0.78616 0.85282 1.19811 1.21139 1.21136 1.20889 0.94053 0.97077 0.97369 1.21224 0.99972 0.92363 1.08920 0.88283 0.92656 0.92617 0.85256 0.85162 0.90234 0.90147 0.88972 0.89063 0.76683 0.91906 0.91881 0.95233 0.91452 0.93375 0.93396 0.91445 0.95232 0.96353 0.96345 0.93095 0.85642 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.81 10.50 -19.44 -0.20 -3.02 16 3 C 0.12 1.10 6.69 -39.21 -0.26 0.83 16 4 C -0.15 -1.34 9.99 -39.43 -0.39 -1.73 16 5 C -0.08 -0.66 9.69 -39.61 -0.38 -1.04 16 6 C -0.12 -1.05 5.14 -104.60 -0.54 -1.59 16 7 C -0.06 -0.60 4.63 -27.88 -0.13 -0.73 16 8 C -0.14 -1.32 5.68 -27.89 -0.16 -1.47 16 9 C 0.51 7.10 7.83 -10.98 -0.09 7.01 16 10 O -0.55 -9.93 15.98 5.56 0.09 -9.84 16 11 N -0.72 -10.11 4.96 -60.30 -0.30 -10.41 16 12 C 0.13 2.24 4.56 -4.04 -0.02 2.22 16 13 C -0.07 -1.37 0.54 -154.50 -0.08 -1.45 16 14 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 15 C -0.13 -2.19 8.05 37.16 0.30 -1.90 16 16 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 17 C -0.51 -13.51 7.65 -34.44 -0.26 -13.77 16 18 H 0.06 1.52 5.68 -52.48 -0.30 1.23 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 21 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.08 -0.65 9.69 -39.61 -0.38 -1.03 16 26 C -0.21 -1.71 9.04 -39.43 -0.36 -2.07 16 27 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 32 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 33 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.40 4.66 6.16 -40.82 -0.25 4.41 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 40 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 44 H 0.03 0.41 6.86 -51.93 -0.36 0.05 16 45 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 394.38 15.07 5.94 5.94 Total: -1.00 -32.18 394.38 -8.55 -40.73 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -8.12 Total: 1.41 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.68 Total: -15.29 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.44 Total: -36.03 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.12 Total: -12.86 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.18 -8.55 -40.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345918230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.271 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds