Wall clock time and date at job start Tue Mar 31 2020 12:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99600 * 2 1 4 4 C 1.38737 * 120.05249 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94063 * 180.02562 * 4 3 2 6 6 C 1.38269 * 120.05706 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47116 * 90.00278 * 7 6 5 9 9 C 1.50696 * 109.47110 * 179.97438 * 8 7 6 10 10 O 1.21281 * 120.00042 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99865 * 179.97438 * 9 8 7 12 12 C 1.46496 * 119.99741 * 179.97438 * 11 9 8 13 13 C 1.53000 * 109.46986 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47114 * 300.00283 * 13 12 11 15 15 C 1.53004 * 109.47174 * 60.00117 * 13 12 11 16 16 C 1.52996 * 109.47213 * 180.02562 * 13 12 11 17 17 C 1.50706 * 109.47456 * 179.97438 * 16 13 12 18 18 H 1.08005 * 119.99459 * 359.97438 * 17 16 13 19 19 C 1.37870 * 120.00033 * 179.97438 * 17 16 13 20 20 N 1.31513 * 120.00528 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99808 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46753 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47352 * 119.99621 * 21 19 17 24 24 H 1.48501 * 109.46868 * 240.00178 * 21 19 17 25 25 C 1.38263 * 120.11156 * 0.25962 * 6 5 4 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 6 5 27 27 H 1.08996 * 109.47049 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47478 * 299.99538 * 1 2 3 29 29 H 1.08998 * 109.47227 * 59.99807 * 1 2 3 30 30 H 1.07994 * 120.02908 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.97159 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.46646 * 209.99692 * 7 6 5 33 33 H 1.09000 * 109.47248 * 330.00409 * 7 6 5 34 34 H 1.09000 * 109.47214 * 300.00167 * 8 7 6 35 35 H 1.09008 * 109.47142 * 59.99333 * 8 7 6 36 36 H 0.96998 * 119.99578 * 0.02562 * 11 9 8 37 37 H 1.09000 * 109.47710 * 300.00483 * 12 11 9 38 38 H 1.09000 * 109.46883 * 60.00527 * 12 11 9 39 39 H 1.09002 * 109.47046 * 60.00040 * 14 13 12 40 40 H 1.08999 * 109.46951 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.47119 * 299.99485 * 14 13 12 42 42 H 1.09000 * 109.46579 * 60.00187 * 15 13 12 43 43 H 1.09003 * 109.46739 * 179.97438 * 15 13 12 44 44 H 1.08991 * 109.46590 * 300.00352 * 15 13 12 45 45 H 1.09008 * 109.47046 * 299.99946 * 16 13 12 46 46 H 1.09003 * 109.47659 * 60.00123 * 16 13 12 47 47 H 0.96998 * 120.00218 * 180.02562 * 20 19 17 48 48 H 1.08001 * 119.97259 * 179.69844 * 25 6 5 49 49 H 1.07992 * 120.02912 * 180.24892 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6759 0.0016 7 6 3.9859 5.0187 0.0028 8 6 4.2167 5.4747 -1.4393 9 6 4.9003 6.8177 -1.4382 10 8 5.1762 7.3568 -0.3874 11 7 5.2061 7.4193 -2.6049 12 6 5.8701 8.7251 -2.6038 13 6 6.1010 9.1811 -4.0459 14 6 6.9833 8.1608 -4.7683 15 6 4.7562 9.2934 -4.7668 16 6 6.7951 10.5445 -4.0447 17 6 7.0231 10.9934 -5.4652 18 1 6.7052 10.3684 -6.2866 19 6 7.6376 12.2019 -5.7160 20 7 8.0243 12.9632 -4.7158 21 14 7.9196 12.7586 -7.4767 22 1 7.3964 11.7296 -8.4109 23 1 7.2128 14.0437 -7.7088 24 1 9.3744 12.9444 -7.7101 25 6 1.9209 3.6048 0.0081 26 6 1.2914 2.3752 0.0014 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 4.0208 0.3801 -0.0005 31 1 5.1344 2.5752 -0.0008 32 1 3.3580 5.7459 0.5176 33 1 4.9441 4.9378 0.5160 34 1 4.8445 4.7475 -1.9543 35 1 3.2585 5.5555 -1.9527 36 1 4.9857 6.9879 -3.4453 37 1 5.2414 9.4520 -2.0895 38 1 6.8280 8.6451 -2.0898 39 1 6.4891 7.1892 -4.7691 40 1 7.1474 8.4855 -5.7958 41 1 7.9414 8.0808 -4.2547 42 1 4.1277 10.0203 -4.2521 43 1 4.9207 9.6187 -5.7941 44 1 4.2622 8.3219 -4.7675 45 1 6.1669 11.2716 -3.5299 46 1 7.7532 10.4642 -3.5313 47 1 8.4563 13.8135 -4.8923 48 1 1.3340 4.5114 0.0143 49 1 0.2129 2.3202 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345918230.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:45:59 Heat of formation + Delta-G solvation = -99.595422 kcal Electronic energy + Delta-G solvation = -25721.282753 eV Core-core repulsion = 22032.732773 eV Total energy + Delta-G solvation = -3688.549980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16013 -40.76712 -38.87326 -38.43368 -35.21062 -34.47816 -33.85822 -31.99919 -30.43139 -29.08312 -28.30441 -27.94485 -27.45731 -25.43820 -24.30609 -23.53496 -21.90544 -21.20052 -19.79701 -19.06083 -18.36991 -18.03376 -17.28727 -16.77685 -16.60232 -16.58770 -16.40707 -16.12395 -15.48220 -15.26196 -14.90525 -14.70995 -14.67098 -14.42632 -14.25453 -14.01206 -13.93245 -13.78394 -13.49153 -12.95927 -12.88135 -12.78589 -12.68932 -12.57465 -12.33211 -12.31043 -12.21967 -12.01746 -11.93867 -11.79808 -11.60363 -11.52384 -11.14662 -10.87781 -10.70821 -10.52079 -10.00645 -9.92223 -9.01651 -8.13866 -6.21752 0.42189 0.45464 1.41982 1.43037 1.54777 1.72961 2.29848 2.42022 2.45801 2.82584 3.20648 3.74684 3.87015 3.98659 4.00770 4.09666 4.10091 4.19637 4.24686 4.35827 4.38153 4.40774 4.49790 4.57289 4.69880 4.71361 4.73781 4.74887 4.79345 4.84918 4.96923 4.98988 5.12904 5.13996 5.16291 5.24022 5.35809 5.42907 5.43534 5.50441 5.51348 5.55410 5.60087 5.74880 5.81539 5.86177 5.90619 6.30849 6.47934 6.66277 6.93964 7.35151 7.46198 8.98786 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.032650 B = 0.001799 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.386157 B =15562.908353 C =15863.523103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.338 6.338 3 C 0.107 3.893 4 C -0.163 4.163 5 C -0.079 4.079 6 C -0.122 4.122 7 C -0.055 4.055 8 C -0.123 4.123 9 C 0.504 3.496 10 O -0.593 6.593 11 N -0.711 5.711 12 C 0.141 3.859 13 C -0.066 4.066 14 C -0.122 4.122 15 C -0.121 4.121 16 C 0.039 3.961 17 C -0.513 4.513 18 H 0.073 0.927 19 C -0.007 4.007 20 N -0.939 5.939 21 Si 0.959 3.041 22 H -0.256 1.256 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.081 4.081 26 C -0.209 4.209 27 H 0.116 0.884 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.136 0.864 31 H 0.142 0.858 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.414 0.586 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.054 0.946 44 H 0.072 0.928 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.259 0.741 48 H 0.138 0.862 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.941 -27.053 6.248 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.062 3.938 4 C -0.181 4.181 5 C -0.097 4.097 6 C -0.123 4.123 7 C -0.093 4.093 8 C -0.162 4.162 9 C 0.292 3.708 10 O -0.474 6.474 11 N -0.364 5.364 12 C 0.017 3.983 13 C -0.066 4.066 14 C -0.179 4.179 15 C -0.179 4.179 16 C 0.001 3.999 17 C -0.551 4.551 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.180 1.180 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.099 4.099 26 C -0.228 4.228 27 H 0.135 0.865 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.160 0.840 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.252 0.748 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.068 0.932 48 H 0.156 0.844 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.599 -26.718 7.002 31.721 hybrid contribution 0.292 1.112 -0.778 1.388 sum -15.307 -25.607 6.224 30.475 Atomic orbital electron populations 1.23310 0.76632 1.05436 1.02172 1.86041 1.23330 1.27088 1.88803 1.19280 0.92790 0.84652 0.97062 1.20629 0.91695 0.99147 1.06648 1.21078 1.00708 0.90728 0.97198 1.19812 0.93855 0.94799 1.03791 1.20158 1.00771 0.92887 0.95474 1.21673 1.02941 0.92141 0.99459 1.21452 0.78208 0.88175 0.82933 1.90689 1.55933 1.67812 1.32970 1.46039 1.60448 1.20611 1.09301 1.21166 0.95866 0.84203 0.97106 1.20714 0.96977 0.96376 0.92534 1.21697 0.98315 0.97398 1.00471 1.21694 0.94765 1.00931 1.00481 1.18986 0.93509 0.91346 0.96042 1.21639 1.36855 1.03317 0.93258 0.90854 1.25965 0.95980 0.97315 1.01083 1.70130 1.42337 1.12589 1.32953 0.85477 0.77511 0.78304 0.80226 1.17975 1.21091 1.21108 1.21088 0.94019 0.97758 0.97012 1.21439 1.00992 0.91925 1.08397 0.86528 0.91883 0.91766 0.84594 0.84029 0.91339 0.91315 0.86572 0.86599 0.74797 0.93860 0.93868 0.90938 0.92652 0.94522 0.94514 0.92649 0.90926 0.99675 0.99687 0.93212 0.84405 0.83737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.46 10.50 -92.47 -0.97 -6.43 16 3 C 0.11 1.82 6.69 22.51 0.15 1.97 16 4 C -0.16 -2.69 9.99 22.37 0.22 -2.47 16 5 C -0.08 -1.24 9.69 22.25 0.22 -1.03 16 6 C -0.12 -1.99 5.14 -19.85 -0.10 -2.10 16 7 C -0.06 -1.00 4.63 29.85 0.14 -0.86 16 8 C -0.12 -2.02 5.68 29.85 0.17 -1.85 16 9 C 0.50 13.35 7.83 87.65 0.69 14.04 16 10 O -0.59 -21.57 15.98 -3.03 -0.05 -21.62 16 11 N -0.71 -18.41 4.96 -463.06 -2.30 -20.70 16 12 C 0.14 4.97 4.56 86.38 0.39 5.36 16 13 C -0.07 -2.44 0.54 -52.18 -0.03 -2.47 16 14 C -0.12 -3.99 8.05 71.98 0.58 -3.41 16 15 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 16 C 0.04 1.97 4.04 29.85 0.12 2.09 16 17 C -0.51 -27.40 7.65 25.60 0.20 -27.20 16 18 H 0.07 3.66 5.68 -2.91 -0.02 3.64 16 19 C -0.01 -0.38 5.46 84.65 0.46 0.09 16 20 N -0.94 -57.18 13.29 21.44 0.28 -56.90 16 21 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 C -0.08 -1.21 9.69 22.25 0.22 -1.00 16 26 C -0.21 -3.04 9.04 22.37 0.20 -2.83 16 27 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 29 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 30 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.07 1.39 8.04 -2.39 -0.02 1.37 16 33 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 34 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.41 8.00 6.16 -92.71 -0.57 7.42 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.07 1.75 6.86 -2.39 -0.02 1.73 16 40 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 41 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.05 1.95 6.62 -2.39 -0.02 1.94 16 44 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 45 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 46 H -0.02 -0.87 8.14 -2.39 -0.02 -0.89 16 47 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 48 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 49 H 0.14 1.45 6.30 -2.91 -0.02 1.43 16 Total: -1.00 -72.74 394.38 4.67 -68.07 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.36 Total: 15.86 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 5.32 Total: -23.81 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -2.01 Total: -77.60 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.02 Total: -28.04 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -72.74 4.67 -68.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345918230.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.530 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds