Wall clock time and date at job start Tue Mar 31 2020 12:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 C 1.50703 * 109.46906 * 180.02562 * 9 8 7 11 11 O 1.21275 * 120.00096 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99991 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99937 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.46852 * 179.97438 * 13 12 10 15 15 C 1.53004 * 109.47404 * 299.99720 * 14 13 12 16 16 C 1.52994 * 109.47393 * 59.99725 * 14 13 12 17 17 C 1.53008 * 109.46974 * 179.97438 * 14 13 12 18 18 C 1.50701 * 109.46882 * 180.02562 * 17 14 13 19 19 H 1.07997 * 120.00302 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99693 * 180.02562 * 18 17 14 21 21 N 1.31515 * 120.00337 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99934 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.46898 * 90.00267 * 22 20 18 24 24 H 1.48503 * 109.47085 * 210.00182 * 22 20 18 25 25 H 1.48499 * 109.47109 * 329.99971 * 22 20 18 26 26 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 27 27 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 29 29 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 30 30 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 31 31 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 32 32 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 33 33 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 34 34 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 35 35 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 36 36 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 37 37 H 0.97001 * 120.00190 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47082 * 299.99524 * 13 12 10 39 39 H 1.09000 * 109.47481 * 59.99682 * 13 12 10 40 40 H 1.08999 * 109.47138 * 59.99638 * 15 14 13 41 41 H 1.08996 * 109.47298 * 180.02562 * 15 14 13 42 42 H 1.09005 * 109.46594 * 300.00434 * 15 14 13 43 43 H 1.09002 * 109.46998 * 59.99985 * 16 14 13 44 44 H 1.09006 * 109.47179 * 179.97438 * 16 14 13 45 45 H 1.09003 * 109.47567 * 299.99983 * 16 14 13 46 46 H 1.08995 * 109.46550 * 299.99966 * 17 14 13 47 47 H 1.08993 * 109.46916 * 59.99804 * 17 14 13 48 48 H 0.96994 * 120.00610 * 180.02562 * 21 20 18 49 49 H 1.08006 * 120.02917 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 6 7.5738 2.7062 -1.4449 11 8 8.1800 2.7389 -0.3951 12 7 8.2458 2.7429 -2.6126 13 6 9.7088 2.8205 -2.6137 14 6 10.2169 2.8481 -4.0565 15 6 9.7734 1.5738 -4.7780 16 6 9.6409 4.0687 -4.7769 17 6 11.7448 2.9299 -4.0576 18 6 12.2453 2.9577 -5.4788 19 1 11.5439 2.9203 -6.2992 20 6 13.5988 3.0297 -5.7318 21 7 14.0357 3.0535 -6.9720 22 14 14.8120 3.0936 -4.3128 23 1 15.2078 1.7125 -3.9374 24 1 16.0160 3.8589 -4.7250 25 1 14.1766 3.7604 -3.1479 26 6 3.4311 1.2849 -0.0001 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3203 -0.0106 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6381 0.0002 33 1 5.8760 3.5065 0.5126 34 1 5.9718 1.7291 0.5125 35 1 5.7537 1.7175 -1.9574 36 1 5.6579 3.4948 -1.9574 37 1 7.7609 2.7171 -3.4523 38 1 10.0248 3.7282 -2.0994 39 1 10.1193 1.9507 -2.1008 40 1 8.6850 1.5159 -4.7771 41 1 10.1358 1.5933 -5.8057 42 1 10.1839 0.7042 -4.2646 43 1 9.9569 4.9766 -4.2630 44 1 10.0033 4.0886 -5.8048 45 1 8.5524 4.0110 -4.7762 46 1 12.0604 3.8379 -3.5439 47 1 12.1555 2.0605 -3.5443 48 1 14.9878 3.1038 -7.1500 49 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345929520.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:02 Heat of formation + Delta-G solvation = -96.558926 kcal Electronic energy + Delta-G solvation = -25854.461182 eV Core-core repulsion = 22166.042874 eV Total energy + Delta-G solvation = -3688.418308 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18272 -40.77564 -38.88880 -38.44815 -35.17954 -34.70877 -33.94535 -31.60680 -30.59579 -29.65909 -28.17646 -27.97670 -27.63998 -25.48445 -24.06486 -23.43136 -21.85693 -21.21019 -19.73587 -18.90160 -18.74945 -17.81316 -17.28271 -16.94267 -16.82956 -16.60843 -16.56048 -16.12329 -15.55321 -15.39325 -15.08102 -14.84783 -14.55638 -14.23630 -14.16689 -14.13801 -14.02226 -13.71930 -13.56140 -12.95355 -12.91846 -12.82621 -12.76539 -12.59313 -12.42552 -12.29845 -12.15735 -11.98845 -11.88178 -11.77389 -11.66271 -11.50760 -11.28341 -10.93052 -10.78900 -10.70746 -10.00069 -9.75982 -9.13212 -8.22611 -6.22644 0.35525 0.51433 1.35402 1.38156 1.48180 1.71970 2.28261 2.38674 2.41259 2.82545 3.12663 3.69280 3.90426 3.93533 4.02013 4.06387 4.11088 4.17357 4.20396 4.32131 4.34655 4.40345 4.48365 4.56939 4.64993 4.65904 4.69984 4.73038 4.75163 4.82918 4.96134 4.99294 5.03673 5.09999 5.10464 5.22111 5.30682 5.37209 5.38627 5.41254 5.51696 5.52356 5.57970 5.70275 5.70435 5.77050 5.85880 6.37910 6.48481 6.64483 6.84279 7.33059 7.40073 8.92850 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.001920 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.398897 B =14578.687631 C =14782.058402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.160 4.160 7 C -0.044 4.044 8 C -0.060 4.060 9 C -0.124 4.124 10 C 0.507 3.493 11 O -0.590 6.590 12 N -0.713 5.713 13 C 0.138 3.862 14 C -0.059 4.059 15 C -0.124 4.124 16 C -0.124 4.124 17 C -0.004 4.004 18 C -0.502 4.502 19 H 0.053 0.947 20 C 0.005 3.995 21 N -0.950 5.950 22 Si 0.934 3.066 23 H -0.272 1.272 24 H -0.288 1.288 25 H -0.252 1.252 26 C -0.166 4.166 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.413 0.587 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.014 0.986 47 H 0.012 0.988 48 H 0.262 0.738 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.036 -1.284 14.157 34.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.235 4.235 5 C -0.097 4.097 6 C -0.178 4.178 7 C -0.045 4.045 8 C -0.098 4.098 9 C -0.163 4.163 10 C 0.295 3.705 11 O -0.471 6.471 12 N -0.366 5.366 13 C 0.014 3.986 14 C -0.059 4.059 15 C -0.182 4.182 16 C -0.181 4.181 17 C -0.042 4.042 18 C -0.540 4.540 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.759 3.241 23 H -0.198 1.198 24 H -0.214 1.214 25 H -0.176 1.176 26 C -0.185 4.185 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.030 0.970 48 H 0.071 0.929 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -30.378 -1.450 14.787 33.817 hybrid contribution 0.951 -0.009 -0.205 0.973 sum -29.427 -1.458 14.582 32.875 Atomic orbital electron populations 1.23316 0.76514 1.05419 1.02257 1.86051 1.23451 1.27211 1.88783 1.19205 0.92459 0.84842 0.96735 1.21504 1.01050 0.92098 1.08820 1.21261 0.94567 0.97805 0.96112 1.21244 0.94221 0.98397 1.03920 1.19655 0.95223 0.92420 0.97165 1.20249 0.89829 1.03835 0.95881 1.21635 0.88982 1.06658 0.99046 1.21294 0.91382 0.74817 0.82975 1.90684 1.71634 1.51837 1.32913 1.46042 1.07112 1.74183 1.09226 1.21244 0.80153 1.00722 0.96522 1.20562 0.95601 0.96898 0.92884 1.21711 1.00340 0.95844 1.00262 1.21703 0.99879 0.96263 1.00245 1.19572 0.93028 0.96042 0.95544 1.21375 0.92004 1.48090 0.92521 0.92919 1.25840 1.00650 0.95131 0.97537 1.70036 1.14859 1.53532 1.20768 0.85897 0.78688 0.78715 0.80771 1.19774 1.21426 1.17621 1.20445 0.91828 0.98541 1.07691 0.86686 0.91711 0.91632 0.83621 0.83330 0.84427 0.90461 0.91316 0.86976 0.86330 0.74891 0.92854 0.92946 0.91101 0.93653 0.93789 0.93725 0.93669 0.91057 0.96770 0.96995 0.92870 0.85596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.86 10.50 -92.48 -0.97 -6.83 16 3 C 0.11 1.99 6.69 22.50 0.15 2.14 16 4 C -0.22 -2.94 9.04 22.37 0.20 -2.74 16 5 C -0.08 -1.00 10.04 22.26 0.22 -0.77 16 6 C -0.16 -2.30 9.70 22.28 0.22 -2.09 16 7 C -0.04 -0.75 5.13 -19.88 -0.10 -0.86 16 8 C -0.06 -1.09 4.63 29.85 0.14 -0.96 16 9 C -0.12 -2.02 5.68 29.85 0.17 -1.85 16 10 C 0.51 12.70 7.83 87.66 0.69 13.38 16 11 O -0.59 -20.11 15.98 -3.01 -0.05 -20.16 16 12 N -0.71 -17.27 4.96 -463.05 -2.30 -19.57 16 13 C 0.14 4.35 4.56 86.38 0.39 4.75 16 14 C -0.06 -2.07 0.54 -52.18 -0.03 -2.10 16 15 C -0.12 -4.10 8.05 71.98 0.58 -3.52 16 16 C -0.12 -4.04 8.05 71.98 0.58 -3.47 16 17 C 0.00 -0.18 3.11 29.85 0.09 -0.09 16 18 C -0.50 -27.28 8.20 25.60 0.21 -27.07 16 19 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 20 C 0.00 0.27 5.47 84.65 0.46 0.73 16 21 N -0.95 -58.66 13.96 21.45 0.30 -58.36 16 22 Si 0.93 44.65 27.47 68.60 1.88 46.54 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 25 H -0.25 -11.41 6.54 99.48 0.65 -10.76 16 26 C -0.17 -3.09 9.64 22.36 0.22 -2.88 16 27 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.40 7.67 -2.39 -0.02 0.38 16 29 H 0.07 0.40 7.65 -2.39 -0.02 0.38 16 30 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 31 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 32 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 34 H 0.07 1.43 8.04 -2.39 -0.02 1.41 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 7.72 6.16 -92.71 -0.57 7.15 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.76 6.86 -2.39 -0.02 1.74 16 41 H 0.04 1.74 6.62 -2.39 -0.02 1.73 16 42 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.04 1.73 6.62 -2.38 -0.02 1.71 16 45 H 0.07 1.74 6.86 -2.39 -0.02 1.73 16 46 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 47 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 49 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -72.24 390.79 4.48 -67.76 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.31 Total: 16.74 kcal Atomic # 6 Polarization: -31.41 SS G_CDS: 5.30 Total: -26.11 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.00 Total: -77.93 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -1.02 Total: -27.00 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.88 Total: 46.54 kcal Total: -72.24 4.48 -67.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345929520.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.794 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds