Wall clock time and date at job start Tue Mar 31 2020 12:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.53001 * 109.46807 * 240.00036 * 2 1 3 5 5 C 1.50705 * 109.46939 * 60.00230 * 4 2 1 6 6 H 1.07998 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99891 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99911 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47244 * 90.00196 * 9 7 5 11 11 H 1.48502 * 109.46790 * 209.99971 * 9 7 5 12 12 H 1.48497 * 109.47445 * 330.00093 * 9 7 5 13 13 C 1.53005 * 109.47228 * 120.00694 * 2 1 3 14 14 N 1.46503 * 109.46795 * 299.99503 * 13 2 1 15 15 C 1.34774 * 119.99738 * 179.97438 * 14 13 2 16 16 O 1.21276 * 119.99986 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.52995 * 109.47057 * 180.02562 * 17 15 14 19 19 O 1.42903 * 109.46972 * 180.02562 * 18 17 15 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09001 * 109.46702 * 299.99329 * 1 2 3 28 28 H 1.08996 * 109.47177 * 59.99487 * 1 2 3 29 29 H 1.09005 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46897 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46894 * 300.00693 * 3 2 1 32 32 H 1.09001 * 109.46617 * 60.00619 * 3 2 1 33 33 H 1.09000 * 109.47251 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47340 * 300.00481 * 4 2 1 35 35 H 0.96998 * 120.00195 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46711 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47104 * 59.99406 * 13 2 1 38 38 H 0.97001 * 120.00056 * 0.02562 * 14 13 2 39 39 H 1.09001 * 109.46585 * 60.00131 * 17 15 14 40 40 H 1.09005 * 109.47002 * 300.00377 * 17 15 14 41 41 H 1.09005 * 109.47112 * 60.00104 * 18 17 15 42 42 H 1.08993 * 109.47202 * 300.00207 * 18 17 15 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4330 0.1389 -4.8058 9 14 2.9460 -1.9995 -3.9035 10 1 2.0884 -3.2109 -3.9491 11 1 3.7379 -1.9062 -5.1563 12 1 3.8665 -2.0881 -2.7416 13 6 2.0401 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8770 -0.4917 3.6695 16 8 2.5742 -1.4778 3.7806 17 6 1.3742 0.2183 4.9000 18 6 1.8843 -0.5029 6.1491 19 8 1.4071 0.1700 7.3160 20 6 1.8293 -0.4261 8.5441 21 6 1.2720 0.3610 9.7022 22 6 0.0393 0.0301 10.2333 23 6 -0.4716 0.7518 11.2959 24 6 0.2502 1.8039 11.8277 25 6 1.4804 2.1382 11.2932 26 6 1.9935 1.4136 10.2336 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1299 -0.7209 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 1.6673 -0.1925 -5.6868 36 1 3.1301 -0.7218 1.2489 37 1 1.6766 -1.7491 1.2491 38 1 0.9938 0.7577 2.3565 39 1 0.2842 0.2183 4.8996 40 1 1.7376 1.2461 4.9004 41 1 2.9744 -0.5025 6.1493 42 1 1.5214 -1.5307 6.1489 43 1 2.9182 -0.4233 8.5941 44 1 1.4659 -1.4525 8.5937 45 1 -0.5245 -0.7922 9.8181 46 1 -1.4348 0.4935 11.7106 47 1 -0.1489 2.3674 12.6582 48 1 2.0424 2.9629 11.7058 49 1 2.9568 1.6716 9.8191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346028323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:13 Heat of formation + Delta-G solvation = -80.859132 kcal Electronic energy + Delta-G solvation = -25446.697139 eV Core-core repulsion = 21758.959625 eV Total energy + Delta-G solvation = -3687.737514 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.91215 -39.64078 -37.95836 -37.18931 -33.69090 -32.88995 -32.13278 -31.27841 -31.12151 -27.87188 -26.74831 -26.57953 -26.01773 -23.70099 -22.96087 -22.18580 -21.69478 -20.22646 -18.32519 -17.46547 -17.17185 -16.88262 -16.63825 -16.01622 -15.87647 -15.60861 -15.42972 -14.84576 -14.37675 -14.12536 -13.97182 -13.76449 -13.65564 -13.35199 -13.05355 -13.02993 -12.78976 -12.73353 -12.31693 -12.26587 -11.67356 -11.61116 -11.35738 -11.29203 -11.25994 -11.14000 -11.02216 -10.63630 -10.51265 -9.99598 -9.98347 -9.90709 -9.75780 -9.47114 -9.29372 -9.21893 -9.01144 -8.85406 -8.54864 -6.05548 -4.02944 0.87843 1.02911 2.68784 2.95031 3.30436 3.38520 3.41409 3.42455 3.88202 4.43430 4.44405 4.46070 4.63032 4.65247 4.74975 4.81460 4.89920 5.01719 5.05850 5.16893 5.26901 5.27164 5.29629 5.41295 5.49900 5.56803 5.58644 5.61606 5.61777 5.66206 6.06280 6.08512 6.09461 6.12511 6.15678 6.21583 6.29173 6.45041 6.57519 6.59802 6.66118 6.86034 6.87898 6.99748 7.03309 7.18130 7.34714 7.60768 7.77756 8.29080 8.51428 8.98368 9.57077 11.07134 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.001691 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.296342 B =16553.692148 C =16818.370430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.064 4.064 3 C -0.129 4.129 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.125 3.875 14 N -0.719 5.719 15 C 0.512 3.488 16 O -0.550 6.550 17 C -0.140 4.140 18 C 0.078 3.922 19 O -0.385 6.385 20 C 0.104 3.896 21 C -0.089 4.089 22 C -0.099 4.099 23 C -0.124 4.124 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.099 4.099 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.018 0.982 34 H 0.014 0.986 35 H 0.262 0.738 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.401 0.599 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.059 0.941 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 2.720 31.594 31.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.064 4.064 3 C -0.186 4.186 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.703 3.297 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.371 5.371 15 C 0.298 3.702 16 O -0.428 6.428 17 C -0.180 4.180 18 C 0.001 3.999 19 O -0.305 6.305 20 C 0.028 3.972 21 C -0.089 4.089 22 C -0.117 4.117 23 C -0.142 4.142 24 C -0.134 4.134 25 C -0.142 4.142 26 C -0.117 4.117 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.237 0.763 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.499 2.165 31.442 31.552 hybrid contribution 0.422 -0.638 -0.369 0.849 sum -1.077 1.527 31.073 31.129 Atomic orbital electron populations 1.21781 0.94756 1.01272 1.00830 1.20703 0.95865 0.95948 0.93915 1.21774 1.00453 0.95561 1.00827 1.19591 0.96280 0.95486 0.92609 1.21081 1.31886 1.13366 0.88625 0.90394 1.25001 0.95697 0.96750 0.95984 1.69900 1.45922 1.40535 0.97883 0.86855 0.81336 0.83899 0.77655 1.20388 1.21488 1.19011 1.21653 0.98916 0.96042 0.83153 1.46156 1.53145 1.32040 1.05721 1.20335 0.80502 0.84616 0.84735 1.90703 1.38431 1.26657 1.87033 1.21469 1.03502 1.01370 0.91654 1.22133 0.98677 0.95531 0.83532 1.87883 1.74965 1.54551 1.13061 1.21285 0.98264 0.95311 0.82376 1.19637 0.95490 0.97374 0.96446 1.21102 0.94744 0.99771 0.96063 1.21168 1.00029 0.96163 0.96854 1.21217 0.95011 0.97309 0.99865 1.21168 0.96271 0.99897 0.96872 1.21101 1.00003 0.94482 0.96095 0.94956 0.90843 0.93405 0.93399 0.90843 0.94952 0.96370 0.96816 0.92786 0.91789 0.91801 0.76332 0.88105 0.88109 0.92302 0.92310 0.92272 0.92267 0.85863 0.85881 0.86013 0.85879 0.85865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.06 -1.15 0.54 -154.51 -0.08 -1.23 16 3 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 4 C 0.00 -0.04 3.11 -27.88 -0.09 -0.13 16 5 C -0.51 -13.60 8.20 -34.44 -0.28 -13.89 16 6 H 0.08 2.19 5.92 -52.49 -0.31 1.88 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.87 21.43 27.47 -169.99 -4.67 16.76 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.13 2.05 4.56 -4.04 -0.02 2.03 16 14 N -0.72 -9.58 4.96 -60.29 -0.30 -9.88 16 15 C 0.51 6.94 7.83 -10.98 -0.09 6.86 16 16 O -0.55 -9.53 15.98 5.56 0.09 -9.44 16 17 C -0.14 -1.40 6.07 -27.88 -0.17 -1.57 16 18 C 0.08 0.81 5.23 37.16 0.19 1.01 16 19 O -0.38 -4.04 10.33 -35.23 -0.36 -4.40 16 20 C 0.10 0.89 6.06 36.01 0.22 1.10 16 21 C -0.09 -0.77 5.51 -104.62 -0.58 -1.35 16 22 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 24 C -0.12 -0.78 10.05 -39.58 -0.40 -1.18 16 25 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 26 C -0.10 -0.79 9.70 -39.58 -0.38 -1.17 16 27 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 33 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 34 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.40 4.47 6.16 -40.82 -0.25 4.22 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 42 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 43 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 44 H 0.06 0.44 8.09 -51.93 -0.42 0.02 16 45 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 46 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.12 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 49 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 395.31 15.07 5.96 5.96 Total: -1.00 -32.08 395.31 -9.09 -41.17 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.23 Total: 1.35 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.35 Total: -15.21 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.47 Total: -36.18 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.27 Total: -13.84 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.08 -9.09 -41.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346028323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.692 kcal (2) G-P(sol) polarization free energy of solvation -32.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds