Wall clock time and date at job start Tue Mar 31 2020 12:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.53001 * 109.46807 * 240.00036 * 2 1 3 5 5 C 1.50705 * 109.46939 * 60.00230 * 4 2 1 6 6 H 1.07998 * 120.00068 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99891 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99911 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99967 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47244 * 90.00196 * 9 7 5 11 11 H 1.48502 * 109.46790 * 209.99971 * 9 7 5 12 12 H 1.48497 * 109.47445 * 330.00093 * 9 7 5 13 13 C 1.53005 * 109.47228 * 120.00694 * 2 1 3 14 14 N 1.46503 * 109.46795 * 299.99503 * 13 2 1 15 15 C 1.34774 * 119.99738 * 179.97438 * 14 13 2 16 16 O 1.21276 * 119.99986 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99901 * 180.02562 * 15 14 13 18 18 C 1.52995 * 109.47057 * 180.02562 * 17 15 14 19 19 O 1.42903 * 109.46972 * 180.02562 * 18 17 15 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09001 * 109.46702 * 299.99329 * 1 2 3 28 28 H 1.08996 * 109.47177 * 59.99487 * 1 2 3 29 29 H 1.09005 * 109.47229 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46897 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.46894 * 300.00693 * 3 2 1 32 32 H 1.09001 * 109.46617 * 60.00619 * 3 2 1 33 33 H 1.09000 * 109.47251 * 179.97438 * 4 2 1 34 34 H 1.09001 * 109.47340 * 300.00481 * 4 2 1 35 35 H 0.96998 * 120.00195 * 180.02562 * 8 7 5 36 36 H 1.09000 * 109.46711 * 179.97438 * 13 2 1 37 37 H 1.09001 * 109.47104 * 59.99406 * 13 2 1 38 38 H 0.97001 * 120.00056 * 0.02562 * 14 13 2 39 39 H 1.09001 * 109.46585 * 60.00131 * 17 15 14 40 40 H 1.09005 * 109.47002 * 300.00377 * 17 15 14 41 41 H 1.09005 * 109.47112 * 60.00104 * 18 17 15 42 42 H 1.08993 * 109.47202 * 300.00207 * 18 17 15 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5376 -0.0107 -2.4797 6 1 0.9171 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 1.4330 0.1389 -4.8058 9 14 2.9460 -1.9995 -3.9035 10 1 2.0884 -3.2109 -3.9491 11 1 3.7379 -1.9062 -5.1563 12 1 3.8665 -2.0881 -2.7416 13 6 2.0401 -0.7214 1.2492 14 7 1.5518 -0.0308 2.4454 15 6 1.8770 -0.4917 3.6695 16 8 2.5742 -1.4778 3.7806 17 6 1.3742 0.2183 4.9000 18 6 1.8843 -0.5029 6.1491 19 8 1.4071 0.1700 7.3160 20 6 1.8293 -0.4261 8.5441 21 6 1.2720 0.3610 9.7022 22 6 0.0393 0.0301 10.2333 23 6 -0.4716 0.7518 11.2959 24 6 0.2502 1.8039 11.8277 25 6 1.4804 2.1382 11.2932 26 6 1.9935 1.4136 10.2336 27 1 -0.3633 0.5137 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1301 1.4423 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9562 0.8901 33 1 3.1299 -0.7209 -1.2496 34 1 1.6765 -1.7489 -1.2493 35 1 1.6673 -0.1925 -5.6868 36 1 3.1301 -0.7218 1.2489 37 1 1.6766 -1.7491 1.2491 38 1 0.9938 0.7577 2.3565 39 1 0.2842 0.2183 4.8996 40 1 1.7376 1.2461 4.9004 41 1 2.9744 -0.5025 6.1493 42 1 1.5214 -1.5307 6.1489 43 1 2.9182 -0.4233 8.5941 44 1 1.4659 -1.4525 8.5937 45 1 -0.5245 -0.7922 9.8181 46 1 -1.4348 0.4935 11.7106 47 1 -0.1489 2.3674 12.6582 48 1 2.0424 2.9629 11.7058 49 1 2.9568 1.6716 9.8191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346028323.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:46:12 Heat of formation + Delta-G solvation = -99.595650 kcal Electronic energy + Delta-G solvation = -25447.509615 eV Core-core repulsion = 21758.959625 eV Total energy + Delta-G solvation = -3688.549990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.98480 -40.26260 -38.92148 -38.39025 -35.20792 -34.04850 -33.49664 -31.91164 -31.78753 -29.72460 -27.97996 -27.83929 -26.84277 -24.95168 -23.71401 -23.47554 -22.25949 -21.32783 -19.76054 -18.90349 -18.39496 -17.76532 -17.41442 -16.97854 -16.84101 -16.47453 -16.30948 -16.05329 -15.73940 -15.30252 -15.16672 -14.92929 -14.61733 -14.30155 -14.20360 -14.12871 -14.09502 -13.62153 -13.58610 -13.38435 -12.92717 -12.84098 -12.61191 -12.37482 -12.33342 -12.29852 -12.16244 -11.88568 -11.85926 -11.77751 -11.51333 -11.30741 -10.94990 -10.85331 -10.70806 -10.65188 -10.04726 -9.82070 -9.76509 -8.22681 -6.22820 0.33165 0.50226 1.35407 1.38282 1.48144 1.63293 2.04473 2.38653 2.70799 3.12754 3.15905 3.75663 3.85136 3.90797 3.93860 4.04387 4.08602 4.15105 4.16968 4.25892 4.32863 4.33812 4.42745 4.54117 4.64411 4.65328 4.71228 4.76319 4.79878 4.83401 4.85899 4.96070 5.02960 5.07822 5.10290 5.15997 5.30215 5.37133 5.41294 5.48259 5.55298 5.56715 5.61758 5.66750 5.69956 5.76834 6.08779 6.14171 6.37674 6.57588 6.84172 7.24830 7.39975 8.92841 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.036531 B = 0.001691 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.296342 B =16553.692148 C =16818.370430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.004 4.004 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.252 1.252 13 C 0.138 3.862 14 N -0.710 5.710 15 C 0.514 3.486 16 O -0.590 6.590 17 C -0.129 4.129 18 C 0.080 3.920 19 O -0.394 6.394 20 C 0.101 3.899 21 C -0.107 4.107 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.113 4.113 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.014 0.986 34 H 0.013 0.987 35 H 0.262 0.738 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.415 0.585 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.142 0.858 47 H 0.144 0.856 48 H 0.142 0.858 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 2.946 34.301 34.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.060 4.060 3 C -0.182 4.182 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.759 3.241 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.176 1.176 13 C 0.014 3.986 14 N -0.362 5.362 15 C 0.302 3.698 16 O -0.471 6.471 17 C -0.169 4.169 18 C 0.003 3.997 19 O -0.314 6.314 20 C 0.025 3.975 21 C -0.108 4.108 22 C -0.131 4.131 23 C -0.149 4.149 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.131 4.131 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.032 0.968 34 H 0.031 0.969 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.253 0.747 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.148 0.852 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.159 0.841 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.692 2.412 34.176 34.303 hybrid contribution 0.428 -0.640 -1.128 1.366 sum -1.264 1.771 33.047 33.119 Atomic orbital electron populations 1.21713 0.93855 1.01261 1.01340 1.20572 0.96543 0.96166 0.92721 1.21707 1.00232 0.94870 1.01343 1.19569 0.95920 0.95474 0.93183 1.21383 1.30275 1.12304 0.90126 0.92971 1.25835 0.97446 0.99893 0.95907 1.70040 1.48129 1.42626 0.98425 0.85894 0.79871 0.80381 0.77904 1.19751 1.21474 1.17584 1.21274 0.98269 0.95595 0.83474 1.45978 1.53161 1.32238 1.04850 1.20899 0.79493 0.83995 0.85419 1.90694 1.40253 1.28581 1.87549 1.21420 1.04580 1.01601 0.89280 1.22058 0.98282 0.95341 0.83983 1.87855 1.75156 1.54885 1.13517 1.21403 0.98752 0.95638 0.81741 1.19768 0.96126 0.98032 0.96828 1.21309 0.94819 1.00343 0.96641 1.21466 1.00862 0.96055 0.96549 1.21557 0.94859 0.97246 1.00264 1.21467 0.96652 1.00244 0.96567 1.21308 1.00468 0.94666 0.96671 0.91077 0.93678 0.93682 0.93720 0.93670 0.91069 0.96755 0.96894 0.92876 0.92719 0.92654 0.74734 0.86064 0.86072 0.92994 0.93001 0.91634 0.91627 0.85221 0.84053 0.83860 0.84052 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 2 C -0.06 -2.06 0.54 -52.18 -0.03 -2.09 16 3 C -0.12 -4.03 8.05 71.98 0.58 -3.45 16 4 C 0.00 -0.16 3.11 29.85 0.09 -0.07 16 5 C -0.50 -27.18 8.20 25.60 0.21 -26.97 16 6 H 0.05 3.04 5.92 -2.91 -0.02 3.02 16 7 C 0.01 0.31 5.47 84.66 0.46 0.77 16 8 N -0.95 -58.50 13.96 21.45 0.30 -58.20 16 9 Si 0.93 44.35 27.47 68.60 1.88 46.23 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 13 C 0.14 4.26 4.56 86.38 0.39 4.65 16 14 N -0.71 -16.83 4.96 -463.05 -2.30 -19.13 16 15 C 0.51 12.69 7.83 87.66 0.69 13.38 16 16 O -0.59 -19.67 15.98 -3.02 -0.05 -19.71 16 17 C -0.13 -2.19 6.07 29.85 0.18 -2.01 16 18 C 0.08 1.54 5.23 71.98 0.38 1.92 16 19 O -0.39 -7.64 10.33 -148.98 -1.54 -9.18 16 20 C 0.10 1.62 6.06 71.24 0.43 2.05 16 21 C -0.11 -1.76 5.51 -19.86 -0.11 -1.86 16 22 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 23 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 24 C -0.12 -1.39 10.05 22.27 0.22 -1.17 16 25 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 26 C -0.11 -1.68 9.70 22.27 0.22 -1.46 16 27 H 0.07 1.72 6.86 -2.39 -0.02 1.71 16 28 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 29 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.04 1.72 6.62 -2.39 -0.02 1.71 16 32 H 0.07 1.73 6.86 -2.39 -0.02 1.71 16 33 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 34 H 0.01 0.57 7.57 -2.39 -0.02 0.56 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 7.56 6.16 -92.71 -0.57 6.99 16 39 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 42 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 43 H 0.07 0.94 8.08 -2.38 -0.02 0.92 16 44 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 45 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 46 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 47 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 49 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 Total: -1.00 -70.57 395.31 3.56 -67.02 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.29 Total: 17.01 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: 4.96 Total: -24.04 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -2.00 Total: -77.33 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -1.59 Total: -28.90 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.88 Total: 46.23 kcal Total: -70.57 3.56 -67.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346028323.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.577 kcal (2) G-P(sol) polarization free energy of solvation -70.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds