Wall clock time and date at job start Tue Mar 31 2020 12:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47431 * 2 1 4 4 C 1.53005 * 109.46881 * 120.00189 * 2 1 3 5 5 C 1.52997 * 109.47226 * 174.99926 * 4 2 1 6 6 N 1.46501 * 109.47266 * 179.97438 * 5 4 2 7 7 C 1.46493 * 120.00542 * 270.00097 * 6 5 4 8 8 C 1.50696 * 109.47455 * 270.00252 * 7 6 5 9 9 H 1.08005 * 119.99862 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00473 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99977 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99562 * 359.97438 * 10 8 7 13 13 H 1.48499 * 109.46763 * 90.00141 * 12 10 8 14 14 H 1.48495 * 109.46651 * 210.00000 * 12 10 8 15 15 H 1.48501 * 109.47211 * 330.00059 * 12 10 8 16 16 C 1.34775 * 119.99510 * 90.00167 * 6 5 4 17 17 O 1.21286 * 120.00172 * 0.02562 * 16 6 5 18 18 C 1.50700 * 119.99922 * 180.02562 * 16 6 5 19 19 C 1.53001 * 109.47427 * 179.97438 * 18 16 6 20 20 O 1.42902 * 109.47386 * 179.97438 * 19 18 16 21 21 C 1.35898 * 116.99694 * 180.02562 * 20 19 18 22 22 C 1.38735 * 120.05254 * 179.97438 * 21 20 19 23 23 C 1.38144 * 119.94607 * 179.97438 * 22 21 20 24 24 C 1.38266 * 120.05233 * 0.02562 * 23 22 21 25 25 C 1.38269 * 120.11595 * 359.95530 * 24 23 22 26 26 C 1.38142 * 120.04935 * 0.04230 * 25 24 23 27 27 H 1.08996 * 109.47230 * 300.00340 * 1 2 3 28 28 H 1.08996 * 109.46688 * 60.00367 * 1 2 3 29 29 H 1.09000 * 109.46881 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47230 * 239.99660 * 2 1 3 31 31 H 1.08995 * 109.47256 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46667 * 300.00020 * 3 2 1 33 33 H 1.09004 * 109.46603 * 59.99773 * 3 2 1 34 34 H 1.08996 * 109.47473 * 54.99592 * 4 2 1 35 35 H 1.09006 * 109.46683 * 294.99728 * 4 2 1 36 36 H 1.09004 * 109.47037 * 59.99786 * 5 4 2 37 37 H 1.08998 * 109.47301 * 299.99778 * 5 4 2 38 38 H 1.09008 * 109.46869 * 29.99657 * 7 6 5 39 39 H 1.08998 * 109.47655 * 149.99670 * 7 6 5 40 40 H 0.96998 * 119.99888 * 180.02562 * 11 10 8 41 41 H 1.08999 * 109.47374 * 59.99814 * 18 16 6 42 42 H 1.09006 * 109.46766 * 299.99807 * 18 16 6 43 43 H 1.08999 * 109.46920 * 59.99629 * 19 18 16 44 44 H 1.08998 * 109.47220 * 299.99999 * 19 18 16 45 45 H 1.08002 * 120.02704 * 359.70561 * 22 21 20 46 46 H 1.08001 * 119.97447 * 179.97438 * 23 22 21 47 47 H 1.08000 * 119.94089 * 179.97438 * 24 23 22 48 48 H 1.07992 * 119.97577 * 180.02562 * 25 24 23 49 49 H 1.08005 * 120.02748 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8312 1.1881 6 7 4.0531 -1.5213 2.3845 7 6 4.4016 -0.7533 3.5823 8 6 5.8554 -0.3613 3.5226 9 1 6.4596 -0.6554 2.6770 10 6 6.4144 0.3726 4.5473 11 7 7.6833 0.7142 4.4952 12 14 5.3691 0.8818 6.0094 13 1 5.4383 -0.1685 7.0569 14 1 5.8784 2.1637 6.5592 15 1 3.9599 1.0548 5.5741 16 6 4.1818 -2.8629 2.3832 17 8 3.8938 -3.4988 1.3913 18 6 4.6836 -3.5729 3.6141 19 6 4.7346 -5.0789 3.3490 20 8 5.2110 -5.7522 4.5160 21 6 5.3172 -7.1053 4.4475 22 6 5.7735 -7.8228 5.5437 23 6 5.8801 -9.1982 5.4718 24 6 5.5330 -9.8597 4.3083 25 6 5.0776 -9.1470 3.2145 26 6 4.9692 -7.7715 3.2815 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 3.9994 0.1674 1.1422 37 1 3.8532 -1.3941 0.3004 38 1 3.7850 0.1444 3.6304 39 1 4.2257 -1.3627 4.4687 40 1 8.0766 1.2302 5.2163 41 1 4.0107 -3.3738 4.4481 42 1 5.6828 -3.2128 3.8593 43 1 5.4072 -5.2784 2.5148 44 1 3.7353 -5.4388 3.1040 45 1 6.0492 -7.3061 6.4511 46 1 6.2356 -9.7572 6.3248 47 1 5.6174 -10.9351 4.2539 48 1 4.8068 -9.6660 2.3070 49 1 4.6138 -7.2151 2.4267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349360377.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:29 Heat of formation + Delta-G solvation = -86.378452 kcal Electronic energy + Delta-G solvation = -26618.335422 eV Core-core repulsion = 22930.358573 eV Total energy + Delta-G solvation = -3687.976849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31066 -40.74801 -38.43606 -37.86872 -36.44778 -34.52100 -33.33228 -31.89521 -31.02562 -30.36488 -29.18401 -27.98745 -26.07098 -24.60374 -24.02546 -23.33506 -22.44776 -20.88453 -20.01000 -19.26303 -19.08839 -17.95044 -17.42884 -17.21362 -16.85800 -16.56734 -16.42494 -15.95216 -15.75503 -15.34468 -14.91967 -14.76095 -14.67972 -14.40625 -14.28543 -14.15549 -14.02122 -13.67435 -13.63455 -13.19578 -12.98145 -12.91978 -12.76639 -12.64020 -12.48028 -12.45189 -12.15574 -12.11733 -11.81184 -11.78525 -11.72691 -11.64003 -11.56255 -11.40882 -10.89134 -10.75771 -9.95471 -9.48177 -9.18770 -8.31005 -6.39091 0.39107 0.48799 1.40797 1.41096 1.50570 1.59965 1.83872 2.33829 2.50193 2.84864 3.03338 3.63071 3.76923 3.87941 3.93531 3.93900 3.98930 4.03461 4.07639 4.22836 4.29634 4.35105 4.46817 4.52440 4.56284 4.61521 4.67217 4.69438 4.73900 4.78914 4.83735 4.86246 4.87753 4.94046 5.04485 5.09302 5.12195 5.14756 5.32364 5.38138 5.42993 5.48021 5.48811 5.51310 5.59474 5.65442 5.87426 6.14940 6.40821 6.53892 6.66918 7.15321 7.28976 8.85352 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009348 B = 0.003496 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.711910 B = 8007.331829 C =10422.089937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.149 4.149 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.592 5.592 7 C 0.216 3.784 8 C -0.543 4.543 9 H 0.029 0.971 10 C 0.021 3.979 11 N -0.942 5.942 12 Si 0.939 3.061 13 H -0.262 1.262 14 H -0.285 1.285 15 H -0.236 1.236 16 C 0.521 3.479 17 O -0.588 6.588 18 C -0.134 4.134 19 C 0.091 3.909 20 O -0.331 6.331 21 C 0.104 3.896 22 C -0.170 4.170 23 C -0.081 4.081 24 C -0.161 4.161 25 C -0.086 4.086 26 C -0.224 4.224 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.116 0.884 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.157 0.843 47 H 0.153 0.847 48 H 0.146 0.854 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.785 -12.277 -1.060 17.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 C -0.206 4.206 4 C -0.155 4.155 5 C -0.006 4.006 6 N -0.321 5.321 7 C 0.094 3.906 8 C -0.582 4.582 9 H 0.047 0.953 10 C -0.178 4.178 11 N -0.581 5.581 12 Si 0.761 3.239 13 H -0.187 1.187 14 H -0.211 1.211 15 H -0.159 1.159 16 C 0.311 3.689 17 O -0.471 6.471 18 C -0.173 4.173 19 C 0.016 3.984 20 O -0.245 6.245 21 C 0.059 3.941 22 C -0.189 4.189 23 C -0.099 4.099 24 C -0.179 4.179 25 C -0.104 4.104 26 C -0.243 4.243 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.134 0.866 42 H 0.116 0.884 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.151 0.849 46 H 0.175 0.825 47 H 0.170 0.830 48 H 0.164 0.836 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.756 -12.329 -1.324 17.087 hybrid contribution 0.457 0.746 0.322 0.932 sum -11.300 -11.583 -1.002 16.213 Atomic orbital electron populations 1.21783 0.93834 1.01800 1.02365 1.21042 0.96757 0.96311 0.96965 1.21897 1.00805 0.95602 1.02324 1.21900 0.93940 1.00464 0.99187 1.21534 0.94959 0.97132 0.86997 1.47959 1.62708 1.05755 1.15656 1.19689 0.94402 0.92630 0.83909 1.21502 0.95183 1.35106 1.06377 0.95268 1.25785 0.95908 0.94954 1.01197 1.70051 1.14158 1.39273 1.34643 0.85843 0.80511 0.78309 0.79217 1.18719 1.21108 1.15886 1.20368 0.76925 0.82585 0.89070 1.90595 1.53659 1.66444 1.36431 1.21409 1.05060 0.93319 0.97528 1.22271 0.99651 0.90666 0.85850 1.85981 1.81656 1.17545 1.39311 1.19429 0.97012 0.82109 0.95561 1.20752 1.05346 0.94928 0.97863 1.21343 0.96918 0.92443 0.99168 1.21464 1.01806 1.01480 0.93126 1.21301 0.96719 0.92553 0.99820 1.21505 1.08001 0.96979 0.97835 0.92444 0.91437 0.92902 0.91423 0.93436 0.91374 0.92515 0.92767 0.91637 0.90482 0.91896 0.93336 0.93354 0.92245 0.86637 0.88384 0.92256 0.90818 0.84868 0.82493 0.82952 0.83611 0.85644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.19 71.98 0.66 -2.04 16 2 C -0.09 -2.14 2.92 -10.79 -0.03 -2.17 16 3 C -0.15 -3.34 8.95 71.98 0.64 -2.69 16 4 C -0.12 -3.34 5.01 30.59 0.15 -3.19 16 5 C 0.12 4.11 5.16 86.38 0.45 4.56 16 6 N -0.59 -23.64 2.46 -826.17 -2.03 -25.67 16 7 C 0.22 9.12 4.03 85.63 0.35 9.47 16 8 C -0.54 -28.80 9.84 25.60 0.25 -28.55 16 9 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 10 C 0.02 1.11 5.47 84.66 0.46 1.58 16 11 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 12 Si 0.94 39.62 27.47 68.60 1.88 41.50 16 13 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.24 -8.83 6.54 99.48 0.65 -8.18 16 16 C 0.52 20.83 7.67 87.66 0.67 21.50 16 17 O -0.59 -25.14 15.56 -3.05 -0.05 -25.19 16 18 C -0.13 -4.79 4.62 29.85 0.14 -4.65 16 19 C 0.09 3.00 4.03 71.98 0.29 3.29 16 20 O -0.33 -11.02 10.14 -92.40 -0.94 -11.96 16 21 C 0.10 3.06 6.69 22.51 0.15 3.21 16 22 C -0.17 -4.25 9.99 22.37 0.22 -4.03 16 23 C -0.08 -1.53 10.04 22.25 0.22 -1.31 16 24 C -0.16 -2.85 10.04 22.28 0.22 -2.63 16 25 C -0.09 -1.78 10.04 22.25 0.22 -1.55 16 26 C -0.22 -5.93 9.04 22.36 0.20 -5.73 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.05 1.19 6.56 -2.39 -0.02 1.17 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.08 2.78 6.49 -2.39 -0.02 2.77 16 37 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 38 H 0.05 1.95 7.13 -2.38 -0.02 1.94 16 39 H 0.05 1.91 5.87 -2.39 -0.01 1.89 16 40 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.12 3.69 7.40 -2.39 -0.02 3.67 16 42 H 0.10 3.95 8.00 -2.38 -0.02 3.93 16 43 H 0.06 2.03 7.62 -2.39 -0.02 2.01 16 44 H 0.07 2.28 7.62 -2.39 -0.02 2.27 16 45 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 46 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 47 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 48 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 49 H 0.13 3.33 6.30 -2.91 -0.02 3.31 16 Total: -1.00 -66.07 397.22 5.30 -60.77 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.85 Total: 31.15 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 5.28 Total: -14.93 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -1.73 Total: -81.34 kcal Atomic # 8 Polarization: -36.16 SS G_CDS: -0.98 Total: -37.15 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 1.88 Total: 41.50 kcal Total: -66.07 5.30 -60.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349360377.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.610 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds