Wall clock time and date at job start Tue Mar 31 2020 12:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99908 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47314 * 89.99439 * 11 10 8 13 13 H 1.07993 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00113 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 120.00271 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47170 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47246 * 209.99797 * 16 14 12 19 19 H 1.48501 * 109.46879 * 329.99281 * 16 14 12 20 20 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 21 21 C 1.53006 * 109.46992 * 90.00440 * 20 10 8 22 22 C 1.52997 * 109.46977 * 179.97438 * 21 20 10 23 23 C 1.53003 * 109.47181 * 174.99823 * 22 21 20 24 24 C 1.53003 * 109.47253 * 295.00221 * 22 21 20 25 25 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 6 5 27 27 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 29 29 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 30 30 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 33 33 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 34 34 H 1.09006 * 109.47028 * 209.99878 * 11 10 8 35 35 H 1.09002 * 109.47109 * 329.99455 * 11 10 8 36 36 H 0.96998 * 120.00299 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47018 * 209.99971 * 20 10 8 38 38 H 1.09000 * 109.47828 * 330.00266 * 20 10 8 39 39 H 1.09000 * 109.46856 * 299.99630 * 21 20 10 40 40 H 1.09002 * 109.47088 * 59.99836 * 21 20 10 41 41 H 1.09005 * 109.47246 * 54.99753 * 22 21 20 42 42 H 1.09006 * 109.46570 * 59.99929 * 23 22 21 43 43 H 1.09001 * 109.46896 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47302 * 300.00161 * 23 22 21 45 45 H 1.08995 * 109.47539 * 59.99929 * 24 22 21 46 46 H 1.09000 * 109.47399 * 180.02562 * 24 22 21 47 47 H 1.09005 * 109.46612 * 299.99919 * 24 22 21 48 48 H 1.07999 * 119.97019 * 179.70188 * 25 6 5 49 49 H 1.07998 * 120.03323 * 180.24999 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4676 -1.4177 9 8 3.8550 4.7665 -2.3401 10 7 4.8146 6.6488 -1.6629 11 6 5.2473 7.4957 -0.5487 12 6 6.6618 7.1415 -0.1682 13 1 7.1862 6.3636 -0.7031 14 6 7.2868 7.8113 0.8622 15 7 8.5214 7.5025 1.1940 16 14 6.3800 9.1574 1.7871 17 1 5.6579 8.5648 2.9414 18 1 7.3551 10.1644 2.2772 19 1 5.4063 9.8132 0.8776 20 6 5.0352 7.0856 -3.0437 21 6 3.8265 7.8922 -3.5227 22 6 4.0571 8.3489 -4.9646 23 6 2.7995 9.0474 -5.4857 24 6 5.2367 9.3224 -5.0088 25 6 1.9211 3.6047 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5749 -0.0008 32 1 4.9444 4.9376 0.5161 33 1 3.3584 5.7457 0.5177 34 1 5.2032 8.5425 -0.8496 35 1 4.5901 7.3354 0.3060 36 1 8.9610 7.9735 1.9191 37 1 5.9287 7.7082 -3.0895 38 1 5.1669 6.2134 -3.6842 39 1 2.9330 7.2696 -3.4769 40 1 3.6948 8.7644 -2.8823 41 1 4.2771 7.4831 -5.5892 42 1 2.5796 9.9132 -4.8610 43 1 2.9640 9.3732 -6.5128 44 1 1.9592 8.3539 -5.4542 45 1 6.1326 8.8248 -4.6376 46 1 5.4007 9.6481 -6.0359 47 1 5.0167 10.1882 -4.3841 48 1 1.3343 4.5113 0.0141 49 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349434948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:07 Heat of formation + Delta-G solvation = -68.988365 kcal Electronic energy + Delta-G solvation = -26998.259395 eV Core-core repulsion = 23311.036636 eV Total energy + Delta-G solvation = -3687.222759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10430 -39.22446 -37.42721 -36.47830 -34.77307 -32.53847 -31.97277 -30.88353 -29.57105 -28.00303 -27.44768 -27.02644 -26.12597 -23.13505 -22.56390 -22.44779 -21.04016 -19.78209 -18.32489 -18.00122 -17.06397 -16.39112 -16.17369 -15.76126 -15.71130 -15.06998 -14.87285 -14.55659 -14.17571 -13.95050 -13.83208 -13.57748 -13.45901 -13.20739 -12.92267 -12.55885 -12.49498 -12.29722 -12.13734 -12.03235 -11.89269 -11.76283 -11.36737 -11.27158 -11.18354 -10.93218 -10.81958 -10.79523 -10.66121 -10.58807 -10.48705 -10.30410 -10.13964 -9.63173 -9.10302 -8.78324 -8.74283 -7.88645 -7.72469 -6.23537 -4.25434 1.56384 1.61575 3.15551 3.23572 3.25219 3.29651 3.38163 3.75744 4.09932 4.24578 4.85162 4.99795 5.01845 5.03332 5.05271 5.07406 5.08901 5.11155 5.15923 5.32714 5.40636 5.52060 5.60198 5.65951 5.69077 5.78876 5.82319 5.85999 5.90506 5.95880 5.97842 6.07694 6.14637 6.21715 6.29781 6.32830 6.35456 6.42677 6.48371 6.52036 6.59773 6.60967 6.69815 6.91330 6.95143 7.36052 7.43382 7.48269 8.13717 8.40774 8.81516 8.96722 9.36014 10.89043 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.003974 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.351344 B = 7044.363687 C = 9347.142852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.114 3.886 4 C -0.149 4.149 5 C -0.064 4.064 6 C -0.085 4.085 7 C -0.100 4.100 8 C 0.521 3.479 9 O -0.563 6.563 10 N -0.592 5.592 11 C 0.208 3.792 12 C -0.542 4.542 13 H 0.078 0.922 14 C 0.077 3.923 15 N -0.890 5.890 16 Si 0.870 3.130 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.264 1.264 20 C 0.120 3.880 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.144 4.144 24 C -0.150 4.150 25 C -0.070 4.070 26 C -0.207 4.207 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.033 0.967 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.054 0.946 48 H 0.120 0.880 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.173 -4.375 -4.321 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.168 4.168 5 C -0.082 4.082 6 C -0.086 4.086 7 C -0.140 4.140 8 C 0.309 3.691 9 O -0.443 6.443 10 N -0.322 5.322 11 C 0.087 3.913 12 C -0.580 4.580 13 H 0.097 0.903 14 C -0.127 4.127 15 N -0.528 5.528 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.189 1.189 20 C -0.003 4.003 21 C -0.166 4.166 22 C -0.113 4.113 23 C -0.202 4.202 24 C -0.207 4.207 25 C -0.088 4.088 26 C -0.226 4.226 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.134 0.866 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.073 0.927 48 H 0.138 0.862 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.106 -4.858 -4.661 15.630 hybrid contribution -0.484 1.054 0.681 1.345 sum -14.590 -3.804 -3.980 15.594 Atomic orbital electron populations 1.22991 0.78900 1.03476 1.01252 1.86038 1.20996 1.27329 1.89178 1.18973 0.92366 0.83855 0.97838 1.20346 0.91206 0.98490 1.06748 1.20891 1.00117 0.90890 0.96343 1.19401 0.93276 0.94455 1.01425 1.20668 1.03430 0.94045 0.95825 1.20328 0.77266 0.80708 0.90781 1.90620 1.52676 1.54552 1.46415 1.47917 1.57506 1.19509 1.07274 1.19807 0.96159 0.90683 0.84688 1.21387 0.96771 1.21899 1.17928 0.90349 1.24875 0.94675 0.96577 0.96531 1.69889 1.11933 1.41551 1.29377 0.86949 0.80136 0.82487 0.80820 1.19789 1.20899 1.18884 1.21366 0.97359 0.98689 0.82926 1.22000 0.99317 0.99960 0.95334 1.21047 0.95339 0.98369 0.96529 1.21822 0.97563 1.00371 1.00424 1.21910 0.98395 0.99329 1.01105 1.20748 0.93954 0.96830 0.97291 1.21082 0.99509 0.92354 1.09660 0.88602 0.92855 0.92803 0.85466 0.85173 0.86590 0.88764 0.94906 0.95294 0.92346 0.90188 0.90958 0.92024 0.92047 0.91238 0.92885 0.93021 0.92931 0.91956 0.93177 0.92729 0.86191 0.85928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.22 10.50 -19.42 -0.20 -4.42 16 3 C 0.11 1.66 6.69 -39.21 -0.26 1.40 16 4 C -0.15 -2.25 9.99 -39.43 -0.39 -2.64 16 5 C -0.06 -1.04 9.69 -39.61 -0.38 -1.42 16 6 C -0.08 -1.42 4.37 -104.60 -0.46 -1.87 16 7 C -0.10 -1.77 4.38 -29.03 -0.13 -1.90 16 8 C 0.52 10.50 7.67 -10.98 -0.08 10.41 16 9 O -0.56 -12.49 15.61 5.56 0.09 -12.40 16 10 N -0.59 -11.89 2.46 -175.06 -0.43 -12.32 16 11 C 0.21 4.46 4.03 -5.20 -0.02 4.44 16 12 C -0.54 -13.90 9.84 -34.44 -0.34 -14.23 16 13 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 14 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.42 13.96 55.43 0.77 -24.65 16 16 Si 0.87 19.38 27.47 -169.99 -4.67 14.71 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.26 -5.57 6.54 56.52 0.37 -5.20 16 20 C 0.12 2.15 5.16 -4.04 -0.02 2.13 16 21 C -0.13 -1.94 5.01 -26.73 -0.13 -2.08 16 22 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 23 C -0.14 -1.60 9.19 37.16 0.34 -1.26 16 24 C -0.15 -1.83 8.95 37.16 0.33 -1.50 16 25 C -0.07 -1.05 9.69 -39.60 -0.38 -1.44 16 26 C -0.21 -2.86 9.04 -39.43 -0.36 -3.22 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 32 H 0.12 2.17 7.95 -51.93 -0.41 1.75 16 33 H 0.09 1.49 7.34 -51.93 -0.38 1.11 16 34 H 0.03 0.70 7.13 -51.93 -0.37 0.33 16 35 H 0.03 0.59 5.87 -51.93 -0.30 0.29 16 36 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.08 1.45 6.49 -51.93 -0.34 1.11 16 38 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.81 6.56 -51.93 -0.34 0.47 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.12 1.35 6.30 -52.49 -0.33 1.02 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -30.57 396.86 -8.44 -39.01 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -8.32 Total: 5.53 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: -1.66 Total: -11.44 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.34 Total: -36.97 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.12 Total: -16.82 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.67 Total: 14.71 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.57 -8.44 -39.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.976 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds