Wall clock time and date at job start Tue Mar 31 2020 12:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35897 * 116.99869 * 2 1 4 4 C 1.38738 * 120.05227 * 180.02562 * 3 2 1 5 5 C 1.38141 * 119.94391 * 180.02562 * 4 3 2 6 6 C 1.38267 * 120.05384 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94399 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47064 * 89.99908 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47314 * 89.99439 * 11 10 8 13 13 H 1.07993 * 120.00043 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99981 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00113 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 120.00271 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47170 * 89.99576 * 16 14 12 18 18 H 1.48496 * 109.47246 * 209.99797 * 16 14 12 19 19 H 1.48501 * 109.46879 * 329.99281 * 16 14 12 20 20 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 21 21 C 1.53006 * 109.46992 * 90.00440 * 20 10 8 22 22 C 1.52997 * 109.46977 * 179.97438 * 21 20 10 23 23 C 1.53003 * 109.47181 * 174.99823 * 22 21 20 24 24 C 1.53003 * 109.47253 * 295.00221 * 22 21 20 25 25 C 1.38270 * 120.11265 * 0.25255 * 6 5 4 26 26 C 1.38141 * 120.05541 * 359.45293 * 25 6 5 27 27 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46723 * 299.99560 * 1 2 3 29 29 H 1.08994 * 109.47110 * 59.99814 * 1 2 3 30 30 H 1.07996 * 120.02821 * 359.97438 * 4 3 2 31 31 H 1.07993 * 119.97516 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.47152 * 330.00001 * 7 6 5 33 33 H 1.09001 * 109.46980 * 210.00101 * 7 6 5 34 34 H 1.09006 * 109.47028 * 209.99878 * 11 10 8 35 35 H 1.09002 * 109.47109 * 329.99455 * 11 10 8 36 36 H 0.96998 * 120.00299 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.47018 * 209.99971 * 20 10 8 38 38 H 1.09000 * 109.47828 * 330.00266 * 20 10 8 39 39 H 1.09000 * 109.46856 * 299.99630 * 21 20 10 40 40 H 1.09002 * 109.47088 * 59.99836 * 21 20 10 41 41 H 1.09005 * 109.47246 * 54.99753 * 22 21 20 42 42 H 1.09006 * 109.46570 * 59.99929 * 23 22 21 43 43 H 1.09001 * 109.46896 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47302 * 300.00161 * 23 22 21 45 45 H 1.08995 * 109.47539 * 59.99929 * 24 22 21 46 46 H 1.09000 * 109.47399 * 180.02562 * 24 22 21 47 47 H 1.09005 * 109.46612 * 299.99919 * 24 22 21 48 48 H 1.07999 * 119.97019 * 179.70188 * 25 6 5 49 49 H 1.07998 * 120.03323 * 180.24999 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6757 0.0016 7 6 3.9862 5.0185 0.0028 8 6 4.2136 5.4676 -1.4177 9 8 3.8550 4.7665 -2.3401 10 7 4.8146 6.6488 -1.6629 11 6 5.2473 7.4957 -0.5487 12 6 6.6618 7.1415 -0.1682 13 1 7.1862 6.3636 -0.7031 14 6 7.2868 7.8113 0.8622 15 7 8.5214 7.5025 1.1940 16 14 6.3800 9.1574 1.7871 17 1 5.6579 8.5648 2.9414 18 1 7.3551 10.1644 2.2772 19 1 5.4063 9.8132 0.8776 20 6 5.0352 7.0856 -3.0437 21 6 3.8265 7.8922 -3.5227 22 6 4.0571 8.3489 -4.9646 23 6 2.7995 9.0474 -5.4857 24 6 5.2367 9.3224 -5.0088 25 6 1.9211 3.6047 0.0080 26 6 1.2915 2.3751 0.0013 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 4.0209 0.3799 -0.0005 31 1 5.1345 2.5749 -0.0008 32 1 4.9444 4.9376 0.5161 33 1 3.3584 5.7457 0.5177 34 1 5.2032 8.5425 -0.8496 35 1 4.5901 7.3354 0.3060 36 1 8.9610 7.9735 1.9191 37 1 5.9287 7.7082 -3.0895 38 1 5.1669 6.2134 -3.6842 39 1 2.9330 7.2696 -3.4769 40 1 3.6948 8.7644 -2.8823 41 1 4.2771 7.4831 -5.5892 42 1 2.5796 9.9132 -4.8610 43 1 2.9640 9.3732 -6.5128 44 1 1.9592 8.3539 -5.4542 45 1 6.1326 8.8248 -4.6376 46 1 5.4007 9.6481 -6.0359 47 1 5.0167 10.1882 -4.3841 48 1 1.3343 4.5113 0.0141 49 1 0.2130 2.3201 0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349434948.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:07 Heat of formation + Delta-G solvation = -84.800691 kcal Electronic energy + Delta-G solvation = -26998.945069 eV Core-core repulsion = 23311.036636 eV Total energy + Delta-G solvation = -3687.908433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31459 -40.62664 -38.55255 -37.70813 -36.37066 -34.47428 -33.25546 -32.01333 -30.99630 -29.44614 -28.64200 -27.98647 -27.25930 -24.58425 -24.27992 -23.58698 -22.22819 -20.87679 -19.87316 -19.06893 -19.03462 -17.96936 -17.34843 -17.19159 -16.60419 -16.43724 -16.09945 -15.96720 -15.71342 -15.16517 -14.95831 -14.82474 -14.64819 -14.55411 -14.33741 -14.10140 -13.72995 -13.60436 -13.43528 -13.18536 -12.96429 -12.90974 -12.71440 -12.68407 -12.48718 -12.39412 -12.12372 -12.08787 -11.90201 -11.77613 -11.70193 -11.62061 -11.55627 -11.39792 -10.80776 -10.66683 -9.93654 -9.39192 -9.03573 -8.27966 -6.35781 0.40747 0.43798 1.42307 1.43673 1.53113 1.77188 2.29252 2.36455 2.39851 2.83884 3.06245 3.81120 3.84434 3.85284 3.94547 3.97738 4.04123 4.08965 4.23706 4.35957 4.41664 4.42514 4.44427 4.58043 4.60756 4.65945 4.68798 4.72890 4.75030 4.79738 4.84008 4.87441 4.88936 4.95179 5.04624 5.10378 5.13274 5.15742 5.28673 5.32883 5.37263 5.46575 5.48510 5.51522 5.70605 5.74505 5.81471 6.20488 6.46962 6.63629 6.71962 7.26248 7.38480 8.88406 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009067 B = 0.003974 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3087.351344 B = 7044.363687 C = 9347.142852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.113 3.887 4 C -0.162 4.162 5 C -0.082 4.082 6 C -0.107 4.107 7 C -0.093 4.093 8 C 0.516 3.484 9 O -0.586 6.586 10 N -0.597 5.597 11 C 0.217 3.783 12 C -0.541 4.541 13 H 0.027 0.973 14 C 0.020 3.980 15 N -0.943 5.943 16 Si 0.940 3.060 17 H -0.259 1.259 18 H -0.288 1.288 19 H -0.237 1.237 20 C 0.117 3.883 21 C -0.114 4.114 22 C -0.092 4.092 23 C -0.140 4.140 24 C -0.148 4.148 25 C -0.074 4.074 26 C -0.204 4.204 27 H 0.120 0.880 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.268 0.732 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.046 0.954 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.140 0.860 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.547 -3.155 -4.160 18.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.180 4.180 5 C -0.101 4.101 6 C -0.108 4.108 7 C -0.132 4.132 8 C 0.306 3.694 9 O -0.468 6.468 10 N -0.327 5.327 11 C 0.095 3.905 12 C -0.579 4.579 13 H 0.046 0.954 14 C -0.179 4.179 15 N -0.583 5.583 16 Si 0.762 3.238 17 H -0.184 1.184 18 H -0.214 1.214 19 H -0.160 1.160 20 C -0.005 4.005 21 C -0.153 4.153 22 C -0.111 4.111 23 C -0.197 4.197 24 C -0.206 4.206 25 C -0.092 4.092 26 C -0.222 4.222 27 H 0.138 0.862 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.155 0.845 31 H 0.139 0.861 32 H 0.116 0.884 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.157 0.843 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -17.505 -3.646 -4.523 18.444 hybrid contribution 0.592 0.503 0.557 0.956 sum -16.913 -3.144 -3.965 17.654 Atomic orbital electron populations 1.23349 0.76476 1.05581 1.02248 1.86030 1.23504 1.26564 1.88823 1.19111 0.92319 0.84864 0.96958 1.20502 0.92179 0.98375 1.06983 1.20940 0.99950 0.91716 0.97450 1.19427 0.94307 0.93740 1.03307 1.20604 1.03114 0.95522 0.93985 1.20796 0.76695 0.80271 0.91679 1.90594 1.53747 1.54998 1.47421 1.48016 1.57270 1.19645 1.07773 1.19655 0.93767 0.91264 0.85784 1.21515 0.98677 1.20400 1.17350 0.95424 1.25793 0.95331 0.99284 0.97500 1.70059 1.14194 1.43500 1.30515 0.85832 0.79151 0.78919 0.79903 1.18403 1.21352 1.15991 1.21465 0.98755 0.98386 0.81941 1.21879 0.97159 0.99246 0.97011 1.21044 0.96703 0.98613 0.94767 1.21780 0.96300 1.00283 1.01357 1.21892 0.97380 0.99035 1.02258 1.21001 0.93279 0.98251 0.96661 1.21403 1.01091 0.91460 1.08273 0.86155 0.91507 0.92021 0.84494 0.86093 0.88420 0.86494 0.93671 0.93174 0.92309 0.90749 0.92470 0.92957 0.91581 0.91692 0.92338 0.91451 0.92955 0.93524 0.91387 0.92422 0.84267 0.82795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.34 -8.17 10.50 -92.39 -0.97 -9.14 16 3 C 0.11 3.14 6.69 22.51 0.15 3.29 16 4 C -0.16 -4.91 9.99 22.37 0.22 -4.69 16 5 C -0.08 -2.76 9.69 22.25 0.22 -2.55 16 6 C -0.11 -3.58 4.37 -19.85 -0.09 -3.66 16 7 C -0.09 -3.29 4.38 29.10 0.13 -3.17 16 8 C 0.52 21.09 7.67 87.66 0.67 21.76 16 9 O -0.59 -26.51 15.61 -3.03 -0.05 -26.56 16 10 N -0.60 -24.19 2.46 -826.16 -2.03 -26.22 16 11 C 0.22 9.15 4.03 85.63 0.35 9.50 16 12 C -0.54 -28.52 9.84 25.60 0.25 -28.26 16 13 H 0.03 1.69 8.06 -2.91 -0.02 1.67 16 14 C 0.02 1.06 5.47 84.65 0.46 1.52 16 15 N -0.94 -55.66 13.96 21.45 0.30 -55.36 16 16 Si 0.94 39.05 27.47 68.60 1.88 40.94 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.24 -8.75 6.54 99.48 0.65 -8.10 16 20 C 0.12 4.29 5.16 86.38 0.45 4.73 16 21 C -0.11 -3.38 5.01 30.60 0.15 -3.23 16 22 C -0.09 -2.23 2.92 -10.79 -0.03 -2.27 16 23 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 24 C -0.15 -3.42 8.95 71.98 0.64 -2.78 16 25 C -0.07 -2.10 9.69 22.25 0.22 -1.89 16 26 C -0.20 -5.17 9.04 22.37 0.20 -4.97 16 27 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 29 H 0.06 0.81 7.66 -2.39 -0.02 0.79 16 30 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 31 H 0.12 4.09 8.06 -2.91 -0.02 4.06 16 32 H 0.10 3.80 7.95 -2.39 -0.02 3.78 16 33 H 0.12 3.51 7.34 -2.39 -0.02 3.49 16 34 H 0.05 1.82 7.13 -2.38 -0.02 1.80 16 35 H 0.05 1.93 5.87 -2.39 -0.01 1.92 16 36 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.07 2.77 6.49 -2.39 -0.02 2.75 16 38 H 0.06 2.24 7.42 -2.39 -0.02 2.22 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.20 6.56 -2.39 -0.02 1.19 16 46 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 47 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 48 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 49 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 Total: -1.00 -68.26 396.86 5.76 -62.50 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.85 Total: 31.23 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 5.77 Total: -17.39 kcal Atomic # 7 Polarization: -79.85 SS G_CDS: -1.73 Total: -81.58 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.02 Total: -35.70 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.88 Total: 40.94 kcal Total: -68.26 5.76 -62.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434948.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -68.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds