Wall clock time and date at job start Tue Mar 31 2020 12:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30996 * 120.00064 * 2 1 4 4 C 1.50700 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47123 * 125.00200 * 4 3 2 6 6 H 1.09001 * 109.47085 * 55.00247 * 5 4 3 7 7 C 1.52998 * 109.47084 * 174.99905 * 5 4 3 8 8 O 1.42899 * 109.47235 * 55.00196 * 7 5 4 9 9 N 1.46900 * 109.47148 * 295.00057 * 5 4 3 10 10 C 1.46896 * 111.00195 * 154.99709 * 9 5 4 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 5 12 12 C 1.38284 * 119.97210 * 269.97968 * 11 10 9 13 13 C 1.38250 * 120.10839 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.05581 * 359.68103 * 13 12 11 15 15 C 1.38710 * 119.94432 * 0.61525 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.67631 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47087 * 300.00536 * 1 2 3 30 30 H 1.09007 * 109.46696 * 60.00032 * 1 2 3 31 31 H 1.08002 * 119.99701 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.00005 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47310 * 5.00185 * 4 3 2 34 34 H 1.09000 * 109.47116 * 245.00034 * 4 3 2 35 35 H 1.09005 * 109.47166 * 175.00019 * 7 5 4 36 36 H 1.08996 * 109.47140 * 295.00043 * 7 5 4 37 37 H 0.96695 * 114.00450 * 179.97438 * 8 7 5 38 38 H 1.00903 * 110.99490 * 31.04411 * 9 5 4 39 39 H 1.09005 * 109.46944 * 59.99947 * 10 9 5 40 40 H 1.09002 * 109.47398 * 300.00389 * 10 9 5 41 41 H 1.07994 * 119.94418 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.97138 * 179.97438 * 13 12 11 43 43 H 1.08006 * 120.02996 * 180.29325 * 14 13 12 44 44 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 45 45 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 46 46 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 47 47 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 48 48 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.02419 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 1.4086 2.4396 -0.0006 5 6 1.8697 3.2952 1.1810 6 1 2.9520 3.4182 1.1400 7 6 1.1975 4.6678 1.1098 8 8 -0.2203 4.5011 1.0461 9 7 1.4994 2.6332 2.4390 10 6 2.3831 3.0528 3.5348 11 6 1.9731 2.3552 4.8061 12 6 1.0405 2.9383 5.6442 13 6 0.6628 2.3010 6.8114 14 6 1.2116 1.0764 7.1400 15 6 2.1518 0.4923 6.3041 16 8 2.6979 -0.7091 6.6284 17 6 2.2620 -1.3118 7.8486 18 6 2.9808 -2.6484 8.0425 19 6 2.5207 -3.2843 9.3289 20 1 1.7885 -2.7851 9.9463 21 6 3.0336 -4.5037 9.7173 22 7 3.9249 -5.1117 8.9653 23 14 2.4638 -5.2915 11.3123 24 1 0.9977 -5.5209 11.2549 25 1 3.1604 -6.5894 11.4999 26 1 2.7797 -4.3907 12.4498 27 6 2.5296 1.1340 5.1333 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 2.0470 -0.9354 0.0004 32 1 3.2420 1.1344 -0.0004 33 1 0.3403 2.2424 0.0886 34 1 1.6034 2.9712 -0.9320 35 1 1.4559 5.2454 1.9974 36 1 1.5417 5.1952 0.2202 37 1 -0.7124 5.3321 0.9993 38 1 1.5043 1.6296 2.3345 39 1 2.3055 4.1315 3.6714 40 1 3.4129 2.7906 3.2918 41 1 0.6066 3.8931 5.3865 42 1 -0.0655 2.7586 7.4646 43 1 0.9126 0.5767 8.0497 44 1 2.4931 -0.6501 8.6834 45 1 1.1861 -1.4811 7.8061 46 1 2.7494 -3.3099 7.2076 47 1 4.0568 -2.4796 8.0848 48 1 4.2855 -5.9698 9.2383 49 1 3.2578 0.6791 4.4783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349802708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:04 Heat of formation + Delta-G solvation = -64.639446 kcal Electronic energy + Delta-G solvation = -26028.887819 eV Core-core repulsion = 22341.853644 eV Total energy + Delta-G solvation = -3687.034175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.82100 -38.70936 -37.26603 -36.19483 -34.88489 -33.37010 -32.00802 -30.80157 -29.59360 -29.01242 -27.78009 -25.71985 -25.27593 -24.57333 -22.25263 -21.64404 -20.83160 -20.13534 -18.73483 -17.63025 -17.57526 -16.49222 -16.21258 -15.78050 -15.57760 -15.33347 -15.20488 -15.07392 -14.60881 -14.49416 -14.17669 -13.88646 -13.44397 -13.20601 -13.11609 -12.85949 -12.61249 -12.36804 -12.24925 -12.21602 -12.01620 -11.86387 -11.33263 -11.30179 -11.23255 -11.00271 -10.84612 -10.82064 -10.70586 -10.42192 -10.19023 -9.83684 -9.65218 -9.30825 -9.16914 -8.76881 -8.47663 -8.43965 -7.79575 -6.09967 -4.14654 1.47881 1.74292 2.01053 3.28996 3.33267 3.35101 3.76497 3.88200 4.06674 4.24464 4.41410 4.52555 4.70427 4.86686 4.90575 4.99328 5.04384 5.12066 5.17254 5.24168 5.26322 5.33010 5.36001 5.41114 5.44115 5.53852 5.55059 5.56962 5.69830 5.69992 5.86403 5.87779 6.05018 6.05538 6.08842 6.22277 6.48785 6.58538 6.59183 6.63800 6.75196 6.75827 6.86501 7.03790 7.25206 7.45943 7.51303 7.64562 7.82252 8.08306 8.24454 8.90713 9.49557 11.01605 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002300 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.090384 B =12172.187576 C =13270.644367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.148 4.148 3 C -0.180 4.180 4 C -0.094 4.094 5 C 0.092 3.908 6 H 0.055 0.945 7 C 0.089 3.911 8 O -0.555 6.555 9 N -0.669 5.669 10 C 0.101 3.899 11 C -0.049 4.049 12 C -0.147 4.147 13 C -0.082 4.082 14 C -0.211 4.211 15 C 0.145 3.855 16 O -0.317 6.317 17 C 0.066 3.934 18 C 0.026 3.974 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.060 3.940 22 N -0.890 5.890 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.156 4.156 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.371 0.629 38 H 0.348 0.652 39 H 0.077 0.923 40 H 0.037 0.963 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.129 0.871 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.264 0.736 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.656 20.781 -18.128 28.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C -0.199 4.199 4 C -0.131 4.131 5 C -0.018 4.018 6 H 0.073 0.927 7 C 0.010 3.990 8 O -0.359 6.359 9 N -0.302 5.302 10 C -0.028 4.028 11 C -0.050 4.050 12 C -0.166 4.166 13 C -0.100 4.100 14 C -0.230 4.230 15 C 0.098 3.902 16 O -0.230 6.230 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.565 4.565 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.175 4.175 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.217 0.783 38 H 0.169 0.831 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.147 0.853 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.706 20.298 -18.067 27.766 hybrid contribution 0.434 -0.395 0.898 1.073 sum -5.271 19.902 -17.168 26.808 Atomic orbital electron populations 1.20920 0.93101 1.02256 1.02325 1.22921 0.96562 0.97877 0.99250 1.22836 0.99373 0.94573 1.03073 1.20849 1.01810 0.93444 0.96983 1.21554 0.96698 0.93579 0.89992 0.92702 1.22175 0.81949 0.96107 0.98785 1.86589 1.17447 1.34572 1.97301 1.60492 1.53550 1.12955 1.03173 1.20906 0.93833 0.99400 0.88637 1.19366 0.96399 0.93927 0.95298 1.20737 0.99619 1.00962 0.95286 1.20890 0.98442 0.94253 0.96412 1.21383 1.01290 0.98280 1.02006 1.19132 0.91689 0.86038 0.93367 1.86164 1.63448 1.30230 1.43163 1.23317 0.99067 0.96624 0.81837 1.19113 0.96346 0.88145 0.97529 1.20936 1.25005 1.04652 1.05908 0.92419 1.24992 0.94879 0.96960 0.97359 1.69970 1.28785 1.16239 1.37810 0.86541 0.78905 0.78538 0.83360 1.20076 1.21113 1.20086 1.20259 1.04357 0.95936 0.96983 0.92256 0.90740 0.91804 0.87340 0.87697 0.88923 0.90905 0.93825 0.94006 0.78349 0.83130 0.90429 0.94450 0.86459 0.86227 0.85323 0.93176 0.93149 0.95427 0.95449 0.92654 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 8.65 36.01 0.31 -0.83 16 2 C -0.15 -1.36 10.25 -36.02 -0.37 -1.73 16 3 C -0.18 -1.58 8.40 -36.02 -0.30 -1.88 16 4 C -0.09 -0.78 4.78 -27.88 -0.13 -0.91 16 5 C 0.09 0.77 2.43 -67.71 -0.16 0.61 16 6 H 0.06 0.43 7.80 -51.93 -0.40 0.02 16 7 C 0.09 0.65 6.80 37.16 0.25 0.90 16 8 O -0.56 -4.65 12.83 -35.23 -0.45 -5.11 16 9 N -0.67 -6.97 6.25 -107.99 -0.67 -7.65 16 10 C 0.10 1.06 5.61 -4.98 -0.03 1.03 16 11 C -0.05 -0.65 5.39 -104.65 -0.56 -1.22 16 12 C -0.15 -1.91 9.70 -39.56 -0.38 -2.29 16 13 C -0.08 -1.12 10.04 -39.61 -0.40 -1.52 16 14 C -0.21 -3.41 9.04 -39.44 -0.36 -3.76 16 15 C 0.14 2.59 6.69 -39.22 -0.26 2.33 16 16 O -0.32 -6.68 10.14 -19.43 -0.20 -6.87 16 17 C 0.07 1.43 4.68 37.16 0.17 1.61 16 18 C 0.03 0.68 5.34 -27.89 -0.15 0.54 16 19 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 23 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.16 -2.42 9.64 -39.43 -0.38 -2.80 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 30 H 0.06 0.52 7.85 -51.92 -0.41 0.11 16 31 H 0.11 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.09 0.90 5.38 -51.93 -0.28 0.62 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.04 0.31 7.35 -51.93 -0.38 -0.07 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 37 H 0.37 1.56 9.12 45.56 0.42 1.97 16 38 H 0.35 3.99 7.35 -39.29 -0.29 3.71 16 39 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 40 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 43 H 0.13 2.05 6.30 -52.48 -0.33 1.72 16 44 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 45 H 0.05 1.05 7.65 -51.93 -0.40 0.66 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 49 H 0.12 1.82 8.06 -52.49 -0.42 1.39 16 LS Contribution 401.84 15.07 6.06 6.06 Total: -1.00 -31.63 401.84 -10.15 -41.78 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.44 Total: 4.76 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: -3.16 Total: -23.43 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.06 Total: -33.56 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.65 Total: -11.98 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.63 -10.15 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349802708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.860 kcal (2) G-P(sol) polarization free energy of solvation -31.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds