Wall clock time and date at job start Tue Mar 31 2020 12:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.30996 * 120.00064 * 2 1 4 4 C 1.50700 * 120.00101 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47123 * 125.00200 * 4 3 2 6 6 H 1.09001 * 109.47085 * 55.00247 * 5 4 3 7 7 C 1.52998 * 109.47084 * 174.99905 * 5 4 3 8 8 O 1.42899 * 109.47235 * 55.00196 * 7 5 4 9 9 N 1.46900 * 109.47148 * 295.00057 * 5 4 3 10 10 C 1.46896 * 111.00195 * 154.99709 * 9 5 4 11 11 C 1.50697 * 109.47382 * 179.97438 * 10 9 5 12 12 C 1.38284 * 119.97210 * 269.97968 * 11 10 9 13 13 C 1.38250 * 120.10839 * 180.02562 * 12 11 10 14 14 C 1.38161 * 120.05581 * 359.68103 * 13 12 11 15 15 C 1.38710 * 119.94432 * 0.61525 * 14 13 12 16 16 O 1.35900 * 120.05544 * 179.67631 * 15 14 13 17 17 C 1.42898 * 117.00172 * 359.72769 * 16 15 14 18 18 C 1.52997 * 109.47319 * 179.97438 * 17 16 15 19 19 C 1.50697 * 109.47466 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00428 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99563 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00432 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46756 * 59.99920 * 23 21 19 25 25 H 1.48490 * 109.47381 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47117 * 300.00527 * 23 21 19 27 27 C 1.38129 * 119.97079 * 90.00085 * 11 10 9 28 28 H 1.09002 * 109.47469 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47087 * 300.00536 * 1 2 3 30 30 H 1.09007 * 109.46696 * 60.00032 * 1 2 3 31 31 H 1.08002 * 119.99701 * 179.97438 * 2 1 3 32 32 H 1.07997 * 120.00005 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47310 * 5.00185 * 4 3 2 34 34 H 1.09000 * 109.47116 * 245.00034 * 4 3 2 35 35 H 1.09005 * 109.47166 * 175.00019 * 7 5 4 36 36 H 1.08996 * 109.47140 * 295.00043 * 7 5 4 37 37 H 0.96695 * 114.00450 * 179.97438 * 8 7 5 38 38 H 1.00903 * 110.99490 * 31.04411 * 9 5 4 39 39 H 1.09005 * 109.46944 * 59.99947 * 10 9 5 40 40 H 1.09002 * 109.47398 * 300.00389 * 10 9 5 41 41 H 1.07994 * 119.94418 * 0.02562 * 12 11 10 42 42 H 1.08002 * 119.97138 * 179.97438 * 13 12 11 43 43 H 1.08006 * 120.02996 * 180.29325 * 14 13 12 44 44 H 1.09002 * 109.47259 * 300.00149 * 17 16 15 45 45 H 1.09001 * 109.47074 * 60.00171 * 17 16 15 46 46 H 1.09002 * 109.47153 * 300.00307 * 18 17 16 47 47 H 1.08998 * 109.47533 * 59.99936 * 18 17 16 48 48 H 0.97002 * 119.99731 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.02419 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1621 1.1345 0.0000 4 6 1.4086 2.4396 -0.0006 5 6 1.8697 3.2952 1.1810 6 1 2.9520 3.4182 1.1400 7 6 1.1975 4.6678 1.1098 8 8 -0.2203 4.5011 1.0461 9 7 1.4994 2.6332 2.4390 10 6 2.3831 3.0528 3.5348 11 6 1.9731 2.3552 4.8061 12 6 1.0405 2.9383 5.6442 13 6 0.6628 2.3010 6.8114 14 6 1.2116 1.0764 7.1400 15 6 2.1518 0.4923 6.3041 16 8 2.6979 -0.7091 6.6284 17 6 2.2620 -1.3118 7.8486 18 6 2.9808 -2.6484 8.0425 19 6 2.5207 -3.2843 9.3289 20 1 1.7885 -2.7851 9.9463 21 6 3.0336 -4.5037 9.7173 22 7 3.9249 -5.1117 8.9653 23 14 2.4638 -5.2915 11.3123 24 1 0.9977 -5.5209 11.2549 25 1 3.1604 -6.5894 11.4999 26 1 2.7797 -4.3907 12.4498 27 6 2.5296 1.1340 5.1333 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 2.0470 -0.9354 0.0004 32 1 3.2420 1.1344 -0.0004 33 1 0.3403 2.2424 0.0886 34 1 1.6034 2.9712 -0.9320 35 1 1.4559 5.2454 1.9974 36 1 1.5417 5.1952 0.2202 37 1 -0.7124 5.3321 0.9993 38 1 1.5043 1.6296 2.3345 39 1 2.3055 4.1315 3.6714 40 1 3.4129 2.7906 3.2918 41 1 0.6066 3.8931 5.3865 42 1 -0.0655 2.7586 7.4646 43 1 0.9126 0.5767 8.0497 44 1 2.4931 -0.6501 8.6834 45 1 1.1861 -1.4811 7.8061 46 1 2.7494 -3.3099 7.2076 47 1 4.0568 -2.4796 8.0848 48 1 4.2855 -5.9698 9.2383 49 1 3.2578 0.6791 4.4783 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349802708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:03 Heat of formation + Delta-G solvation = -85.062499 kcal Electronic energy + Delta-G solvation = -26029.773429 eV Core-core repulsion = 22341.853644 eV Total energy + Delta-G solvation = -3687.919785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09625 -39.51947 -38.49251 -36.81287 -35.75631 -35.42178 -32.90519 -32.58329 -30.81281 -30.18679 -28.44698 -27.08750 -26.35024 -25.73030 -23.49722 -23.31219 -21.54647 -21.46719 -19.46772 -19.09238 -18.16503 -18.14695 -17.24028 -16.97090 -16.93796 -16.78643 -16.49344 -16.09384 -15.75829 -15.50522 -14.99484 -14.65426 -14.40003 -14.33808 -14.32742 -14.10336 -14.06467 -13.74209 -13.29278 -13.13883 -13.02526 -12.84651 -12.68703 -12.58598 -12.55899 -12.51424 -12.32513 -11.84232 -11.65163 -11.59329 -11.58443 -11.47694 -11.38806 -10.71679 -10.62712 -9.90366 -9.81827 -9.28215 -9.09008 -8.27779 -6.41784 0.34367 0.54737 1.30408 1.40014 1.44191 1.52190 2.26239 2.50356 2.75994 3.06463 3.36324 3.58611 3.81067 3.88826 3.91515 4.12259 4.16737 4.22119 4.24511 4.25093 4.33127 4.40258 4.45838 4.53868 4.56110 4.59017 4.68974 4.71724 4.72802 4.79051 4.83272 4.83895 4.91076 5.03256 5.11722 5.15689 5.29970 5.36609 5.42709 5.44772 5.52656 5.64901 5.67645 5.78625 5.90182 5.93621 6.06319 6.15829 6.39944 6.56676 6.72683 7.10480 7.28362 8.85237 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016360 B = 0.002300 C = 0.002109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1711.090384 B =12172.187576 C =13270.644367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.165 4.165 3 C -0.177 4.177 4 C -0.088 4.088 5 C 0.088 3.912 6 H 0.065 0.935 7 C 0.089 3.911 8 O -0.578 6.578 9 N -0.676 5.676 10 C 0.105 3.895 11 C -0.044 4.044 12 C -0.139 4.139 13 C -0.079 4.079 14 C -0.223 4.223 15 C 0.106 3.894 16 O -0.343 6.343 17 C 0.085 3.915 18 C 0.029 3.971 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.001 3.999 22 N -0.931 5.931 23 Si 0.977 3.023 24 H -0.264 1.264 25 H -0.282 1.282 26 H -0.263 1.263 27 C -0.165 4.165 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.388 0.612 38 H 0.339 0.661 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.126 0.874 44 H 0.059 0.941 45 H 0.058 0.942 46 H -0.003 1.003 47 H -0.002 1.002 48 H 0.267 0.733 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.940 23.217 -17.919 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.183 4.183 3 C -0.195 4.195 4 C -0.125 4.125 5 C -0.021 4.021 6 H 0.082 0.918 7 C 0.011 3.989 8 O -0.384 6.384 9 N -0.308 5.308 10 C -0.023 4.023 11 C -0.044 4.044 12 C -0.157 4.157 13 C -0.097 4.097 14 C -0.242 4.242 15 C 0.061 3.939 16 O -0.257 6.257 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.188 1.188 27 C -0.184 4.184 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.236 0.764 38 H 0.158 0.842 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.164 0.836 42 H 0.168 0.832 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.076 0.924 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.006 22.782 -17.874 29.792 hybrid contribution 0.831 -1.019 0.697 1.488 sum -6.175 21.763 -17.177 28.405 Atomic orbital electron populations 1.20866 0.92963 1.02232 1.02066 1.23010 0.96826 0.98169 1.00270 1.22961 0.99674 0.94725 1.02101 1.20798 1.00808 0.93254 0.97676 1.21680 0.97476 0.94104 0.88852 0.91759 1.22203 0.81520 0.95249 0.99957 1.86543 1.18155 1.36358 1.97391 1.60543 1.53688 1.12463 1.04109 1.20923 0.93999 1.00008 0.87413 1.19682 0.95595 0.92826 0.96333 1.21140 0.98504 1.01646 0.94432 1.21242 0.98310 0.93109 0.97027 1.21491 1.01374 0.99464 1.01832 1.19471 0.93659 0.85561 0.95192 1.86075 1.64669 1.32300 1.42683 1.22844 0.98546 0.94536 0.82960 1.18953 0.95076 0.90369 0.96404 1.21365 1.25369 1.05271 1.06499 0.91128 1.26058 0.94731 0.97550 1.01379 1.70119 1.30104 1.16785 1.40034 0.85329 0.78809 0.77471 0.78422 1.18821 1.20712 1.18770 1.20412 1.04748 0.96901 0.96331 0.92176 0.91921 0.91077 0.87539 0.87216 0.90265 0.89609 0.93371 0.92029 0.76411 0.84195 0.88522 0.94078 0.83592 0.83225 0.85591 0.92237 0.92359 0.98434 0.98375 0.92409 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 8.65 71.24 0.62 -1.60 16 2 C -0.16 -3.03 10.25 25.65 0.26 -2.77 16 3 C -0.18 -2.96 8.40 25.65 0.22 -2.74 16 4 C -0.09 -1.34 4.78 29.85 0.14 -1.20 16 5 C 0.09 1.29 2.43 44.92 0.11 1.40 16 6 H 0.06 0.83 7.80 -2.39 -0.02 0.82 16 7 C 0.09 1.05 6.80 71.98 0.49 1.54 16 8 O -0.58 -8.31 12.83 -148.98 -1.91 -10.22 16 9 N -0.68 -12.91 6.25 -495.58 -3.10 -16.00 16 10 C 0.10 1.96 5.61 85.56 0.48 2.44 16 11 C -0.04 -1.08 5.39 -19.88 -0.11 -1.19 16 12 C -0.14 -3.18 9.70 22.28 0.22 -2.97 16 13 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 14 C -0.22 -7.09 9.04 22.36 0.20 -6.89 16 15 C 0.11 3.90 6.69 22.50 0.15 4.05 16 16 O -0.34 -15.15 10.14 -92.43 -0.94 -16.09 16 17 C 0.09 3.87 4.68 71.98 0.34 4.21 16 18 C 0.03 1.63 5.34 29.85 0.16 1.79 16 19 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 20 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 21 C 0.00 0.08 5.46 84.65 0.46 0.54 16 22 N -0.93 -57.32 13.29 21.45 0.28 -57.03 16 23 Si 0.98 43.87 29.54 68.60 2.03 45.90 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 26 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 27 C -0.16 -5.14 9.64 22.37 0.22 -4.92 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.25 7.66 -2.38 -0.02 1.23 16 30 H 0.07 1.12 7.85 -2.38 -0.02 1.11 16 31 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.11 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.08 1.45 5.38 -2.39 -0.01 1.44 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 0.52 7.35 -2.38 -0.02 0.50 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.39 2.32 9.12 -74.06 -0.68 1.64 16 38 H 0.34 7.53 7.35 -89.69 -0.66 6.88 16 39 H 0.10 1.47 7.30 -2.38 -0.02 1.45 16 40 H 0.04 0.75 8.00 -2.39 -0.02 0.73 16 41 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.13 3.98 6.30 -2.91 -0.02 3.96 16 44 H 0.06 2.54 7.67 -2.39 -0.02 2.52 16 45 H 0.06 2.50 7.65 -2.39 -0.02 2.48 16 46 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 49 H 0.12 3.69 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.92 401.84 0.38 -69.55 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: -0.40 Total: 25.10 kcal Atomic # 6 Polarization: -45.60 SS G_CDS: 4.41 Total: -41.20 kcal Atomic # 7 Polarization: -70.23 SS G_CDS: -2.81 Total: -73.04 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -2.85 Total: -26.31 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.92 0.38 -69.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349802708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.517 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds