Wall clock time and date at job start Tue Mar 31 2020 12:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.53002 * 109.47158 * 59.99812 * 3 2 1 5 5 C 1.52995 * 109.47013 * 299.99814 * 3 2 1 6 6 C 1.50698 * 109.47084 * 180.02562 * 3 2 1 7 7 C 1.38236 * 120.00208 * 179.97438 * 6 3 2 8 8 C 1.38237 * 120.00087 * 180.02562 * 7 6 3 9 9 C 1.38229 * 119.99914 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99666 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47020 * 95.27778 * 10 9 8 12 12 C 1.36931 * 120.00122 * 265.73511 * 11 10 9 13 13 H 1.08001 * 120.00655 * 185.47308 * 12 11 10 14 14 C 1.38817 * 119.99947 * 5.46570 * 12 11 10 15 15 N 1.31616 * 119.99839 * 355.01793 * 14 12 11 16 16 Si 1.86803 * 120.00174 * 175.01186 * 14 12 11 17 17 H 1.48496 * 109.46878 * 90.00600 * 16 14 12 18 18 H 1.48502 * 109.46907 * 210.00409 * 16 14 12 19 19 H 1.48500 * 109.46844 * 330.00389 * 16 14 12 20 20 C 1.46509 * 120.00272 * 85.45536 * 11 10 9 21 21 C 1.50702 * 109.46643 * 90.00183 * 20 11 10 22 22 O 1.20819 * 120.00346 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99732 * 180.02562 * 21 20 11 24 24 C 1.45194 * 116.99918 * 179.97438 * 23 21 20 25 25 C 1.38236 * 120.00245 * 0.25310 * 9 8 7 26 26 C 1.38234 * 119.99936 * 359.48706 * 25 9 8 27 27 H 1.09003 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47313 * 300.00102 * 1 2 3 29 29 H 1.09002 * 109.47160 * 60.00450 * 1 2 3 30 30 H 1.09000 * 109.46968 * 239.99867 * 2 1 3 31 31 H 1.09005 * 109.46960 * 120.00285 * 2 1 3 32 32 H 1.08997 * 109.46901 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46828 * 300.00352 * 4 3 2 34 34 H 1.09005 * 109.46798 * 59.99825 * 4 3 2 35 35 H 1.09000 * 109.47297 * 300.00233 * 5 3 2 36 36 H 1.08999 * 109.47492 * 59.99880 * 5 3 2 37 37 H 1.09003 * 109.47112 * 179.97438 * 5 3 2 38 38 H 1.07998 * 119.99935 * 0.02562 * 7 6 3 39 39 H 1.07998 * 119.99607 * 179.97438 * 8 7 6 40 40 H 1.08993 * 109.47181 * 335.27185 * 10 9 8 41 41 H 1.09002 * 109.46859 * 215.27446 * 10 9 8 42 42 H 0.97003 * 120.00080 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.47299 * 210.00103 * 20 11 10 44 44 H 1.09000 * 109.46819 * 330.00415 * 20 11 10 45 45 H 1.08996 * 109.47635 * 299.99919 * 24 23 21 46 46 H 1.09003 * 109.46987 * 60.00341 * 24 23 21 47 47 H 1.09008 * 109.46776 * 179.97438 * 24 23 21 48 48 H 1.07997 * 119.99949 * 179.73266 * 25 9 8 49 49 H 1.08001 * 120.00282 * 180.23571 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4425 -0.0006 7 6 4.2382 2.6396 -0.0013 8 6 5.6206 2.6395 -0.0024 9 6 6.3117 1.4424 -0.0034 10 6 7.8187 1.4424 -0.0052 11 7 8.3086 1.3151 1.3695 12 6 8.6209 2.4359 2.0916 13 1 9.0648 2.3408 3.0715 14 6 8.3669 3.6945 1.5640 15 7 7.9178 3.8135 0.3326 16 14 8.6624 5.2194 2.6019 17 1 10.0565 5.6906 2.4035 18 1 7.7157 6.2878 2.1925 19 1 8.4496 4.8918 4.0346 20 6 8.4588 -0.0110 1.9739 21 6 9.8451 -0.5341 1.6991 22 8 10.6272 0.1320 1.0633 23 8 10.2106 -1.7408 2.1599 24 6 11.5607 -2.1808 1.8569 25 6 5.6205 0.2452 -0.0086 26 6 4.2382 0.2452 -0.0020 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8937 3.1913 1.2494 33 1 0.4400 2.1637 1.2492 34 1 1.8933 1.6499 2.1392 35 1 1.8934 1.6498 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8930 3.1915 -1.2490 38 1 3.6983 3.5749 -0.0009 39 1 6.1606 3.5748 -0.0033 40 1 8.1815 2.3758 -0.4354 41 1 8.1813 0.6035 -0.5993 42 1 7.7400 4.6930 -0.0360 43 1 8.3043 0.0608 3.0505 44 1 7.7223 -0.6909 1.5457 45 1 11.6938 -2.2275 0.7761 46 1 12.2762 -1.4762 2.2809 47 1 11.7259 -3.1688 2.2867 48 1 6.1605 -0.6900 -0.0137 49 1 3.6981 -0.6901 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352043138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:30 Heat of formation + Delta-G solvation = -30.512827 kcal Electronic energy + Delta-G solvation = -27765.735440 eV Core-core repulsion = 24080.181106 eV Total energy + Delta-G solvation = -3685.554334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.63910 -39.30217 -37.04998 -35.87028 -34.94041 -31.78736 -31.08076 -30.01499 -29.14987 -28.11027 -27.09590 -26.22480 -25.76993 -23.93173 -22.42750 -21.24247 -20.59164 -19.80892 -18.25179 -17.27605 -16.89144 -16.12882 -15.79723 -15.63766 -15.07404 -14.61224 -14.43148 -14.28749 -13.68190 -13.60792 -13.30084 -13.23555 -13.09514 -12.89379 -12.73610 -12.55393 -12.10196 -11.83901 -11.77628 -11.66258 -11.53212 -11.39316 -11.06500 -11.02943 -10.92017 -10.85065 -10.63121 -10.50381 -10.24702 -10.23226 -10.16669 -9.99527 -9.91149 -9.69935 -9.41560 -8.78568 -7.88901 -7.49431 -7.06547 -5.60107 -3.35671 2.32524 2.47013 3.06189 3.27852 3.37827 3.38960 3.44963 4.35174 4.72984 4.89094 4.95199 5.10538 5.21277 5.41202 5.45743 5.46838 5.47351 5.52017 5.55375 5.61679 5.70143 5.81417 5.83347 5.86490 5.90360 5.96659 6.01692 6.04832 6.06440 6.11344 6.17829 6.20831 6.24438 6.33429 6.48523 6.55750 6.57498 6.71920 6.90104 7.05093 7.11581 7.20635 7.44075 7.49528 7.67034 7.82904 8.02619 8.21652 8.52842 8.61664 9.16583 9.67253 10.00209 11.08376 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004164 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.098880 B = 6722.690446 C = 8507.324097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.019 4.019 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.095 4.095 7 C -0.140 4.140 8 C -0.091 4.091 9 C -0.060 4.060 10 C 0.140 3.860 11 N -0.558 5.558 12 C -0.215 4.215 13 H 0.078 0.922 14 C -0.014 4.014 15 N -0.903 5.903 16 Si 0.924 3.076 17 H -0.288 1.288 18 H -0.287 1.287 19 H -0.282 1.282 20 C 0.154 3.846 21 C 0.416 3.584 22 O -0.493 6.493 23 O -0.378 6.378 24 C 0.034 3.966 25 C -0.133 4.133 26 C -0.142 4.142 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.175 0.825 40 H 0.179 0.821 41 H 0.005 0.995 42 H 0.254 0.746 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.019 -7.278 -0.290 11.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.019 4.019 4 C -0.195 4.195 5 C -0.194 4.194 6 C -0.095 4.095 7 C -0.158 4.158 8 C -0.109 4.109 9 C -0.062 4.062 10 C 0.016 3.984 11 N -0.275 5.275 12 C -0.343 4.343 13 H 0.096 0.904 14 C -0.205 4.205 15 N -0.555 5.555 16 Si 0.754 3.246 17 H -0.215 1.215 18 H -0.213 1.213 19 H -0.207 1.207 20 C 0.022 3.978 21 C 0.254 3.746 22 O -0.378 6.378 23 O -0.295 6.295 24 C -0.060 4.060 25 C -0.152 4.152 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.190 0.810 40 H 0.194 0.806 41 H 0.024 0.976 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.117 0.883 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.753 -6.868 -0.533 11.139 hybrid contribution 0.401 0.359 0.512 0.743 sum -8.352 -6.509 -0.021 10.589 Atomic orbital electron populations 1.21918 0.96421 1.01071 1.01862 1.21628 0.95139 0.96292 1.01944 1.19385 0.92077 0.95050 0.95395 1.21912 0.99950 1.00427 0.97164 1.21910 1.00007 1.00379 0.97111 1.19544 0.93285 0.93715 1.02956 1.21083 0.95297 0.96099 1.03336 1.22846 0.92255 1.02769 0.93021 1.20796 0.98859 0.91700 0.94824 1.21611 0.87341 1.05574 0.83867 1.44054 1.71556 0.99115 1.12735 1.19543 1.31835 0.84370 0.98525 0.90436 1.24706 1.01022 0.97824 0.96990 1.69046 1.51643 1.21104 1.13700 0.85906 0.77614 0.81940 0.79121 1.21482 1.21267 1.20730 1.20561 0.88073 0.89063 1.00111 1.27059 0.93507 0.77935 0.76112 1.90606 1.53449 1.57125 1.36600 1.86621 1.32625 1.37369 1.72912 1.23042 0.82334 0.99572 1.01078 1.21099 0.93785 0.97729 1.02613 1.20821 0.94148 0.96710 1.04362 0.93276 0.92577 0.92606 0.91916 0.91862 0.92603 0.92838 0.92749 0.92818 0.92834 0.92604 0.88129 0.80964 0.80620 0.97642 0.93242 0.89267 0.89770 0.92756 0.92701 0.89281 0.88251 0.87590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.21 37.16 0.34 -1.19 16 2 C -0.11 -1.35 3.65 -26.73 -0.10 -1.45 16 3 C -0.02 -0.26 0.63 -155.66 -0.10 -0.36 16 4 C -0.14 -1.78 7.94 37.16 0.29 -1.48 16 5 C -0.14 -1.71 7.93 37.15 0.29 -1.41 16 6 C -0.09 -1.62 4.76 -104.62 -0.50 -2.12 16 7 C -0.14 -2.67 8.71 -39.58 -0.34 -3.01 16 8 C -0.09 -1.99 9.21 -39.58 -0.36 -2.35 16 9 C -0.06 -1.31 5.46 -104.62 -0.57 -1.88 16 10 C 0.14 3.33 5.29 -5.19 -0.03 3.31 16 11 N -0.56 -13.37 2.00 -175.98 -0.35 -13.73 16 12 C -0.21 -5.53 9.82 -15.06 -0.15 -5.68 16 13 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 14 C -0.01 -0.36 5.45 -17.43 -0.09 -0.45 16 15 N -0.90 -22.90 5.73 55.49 0.32 -22.58 16 16 Si 0.92 20.86 29.56 -169.99 -5.02 15.84 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 C 0.15 3.11 6.28 -5.19 -0.03 3.07 16 21 C 0.42 8.55 8.03 36.01 0.29 8.84 16 22 O -0.49 -11.95 16.18 -18.74 -0.30 -12.25 16 23 O -0.38 -6.60 10.57 -39.27 -0.41 -7.01 16 24 C 0.03 0.48 10.56 101.05 1.07 1.55 16 25 C -0.13 -2.60 9.35 -39.58 -0.37 -2.97 16 26 C -0.14 -2.50 8.98 -39.58 -0.36 -2.85 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 29 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 30 H 0.06 0.76 7.51 -51.93 -0.39 0.37 16 31 H 0.06 0.78 7.52 -51.93 -0.39 0.39 16 32 H 0.05 0.75 7.39 -51.93 -0.38 0.37 16 33 H 0.05 0.58 6.43 -51.93 -0.33 0.25 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.57 6.43 -51.93 -0.33 0.23 16 37 H 0.05 0.72 7.39 -51.93 -0.38 0.33 16 38 H 0.10 1.77 7.10 -52.49 -0.37 1.39 16 39 H 0.17 4.09 4.55 -52.66 -0.24 3.85 16 40 H 0.18 4.69 4.55 -82.21 -0.37 4.32 16 41 H 0.01 0.13 8.08 -51.93 -0.42 -0.29 16 42 H 0.25 6.24 8.08 -40.82 -0.33 5.91 16 43 H 0.09 1.67 8.04 -51.93 -0.42 1.25 16 44 H 0.08 1.54 7.05 -51.93 -0.37 1.17 16 45 H 0.05 0.76 8.13 -51.93 -0.42 0.33 16 46 H 0.05 0.78 8.13 -51.93 -0.42 0.35 16 47 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 48 H 0.10 1.79 7.43 -52.49 -0.39 1.40 16 49 H 0.11 1.62 5.90 -52.49 -0.31 1.31 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -28.07 379.56 -8.62 -36.69 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.84 Total: 7.76 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -0.72 Total: -10.43 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: -0.03 Total: -36.31 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.72 Total: -19.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.07 -8.62 -36.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352043138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.179 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds