Wall clock time and date at job start Tue Mar 31 2020 12:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47178 * 2 1 4 4 C 1.53002 * 109.47158 * 59.99812 * 3 2 1 5 5 C 1.52995 * 109.47013 * 299.99814 * 3 2 1 6 6 C 1.50698 * 109.47084 * 180.02562 * 3 2 1 7 7 C 1.38236 * 120.00208 * 179.97438 * 6 3 2 8 8 C 1.38237 * 120.00087 * 180.02562 * 7 6 3 9 9 C 1.38229 * 119.99914 * 0.02562 * 8 7 6 10 10 C 1.50703 * 119.99666 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47020 * 95.27778 * 10 9 8 12 12 C 1.36931 * 120.00122 * 265.73511 * 11 10 9 13 13 H 1.08001 * 120.00655 * 185.47308 * 12 11 10 14 14 C 1.38817 * 119.99947 * 5.46570 * 12 11 10 15 15 N 1.31616 * 119.99839 * 355.01793 * 14 12 11 16 16 Si 1.86803 * 120.00174 * 175.01186 * 14 12 11 17 17 H 1.48496 * 109.46878 * 90.00600 * 16 14 12 18 18 H 1.48502 * 109.46907 * 210.00409 * 16 14 12 19 19 H 1.48500 * 109.46844 * 330.00389 * 16 14 12 20 20 C 1.46509 * 120.00272 * 85.45536 * 11 10 9 21 21 C 1.50702 * 109.46643 * 90.00183 * 20 11 10 22 22 O 1.20819 * 120.00346 * 359.97438 * 21 20 11 23 23 O 1.34233 * 119.99732 * 180.02562 * 21 20 11 24 24 C 1.45194 * 116.99918 * 179.97438 * 23 21 20 25 25 C 1.38236 * 120.00245 * 0.25310 * 9 8 7 26 26 C 1.38234 * 119.99936 * 359.48706 * 25 9 8 27 27 H 1.09003 * 109.47053 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.47313 * 300.00102 * 1 2 3 29 29 H 1.09002 * 109.47160 * 60.00450 * 1 2 3 30 30 H 1.09000 * 109.46968 * 239.99867 * 2 1 3 31 31 H 1.09005 * 109.46960 * 120.00285 * 2 1 3 32 32 H 1.08997 * 109.46901 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46828 * 300.00352 * 4 3 2 34 34 H 1.09005 * 109.46798 * 59.99825 * 4 3 2 35 35 H 1.09000 * 109.47297 * 300.00233 * 5 3 2 36 36 H 1.08999 * 109.47492 * 59.99880 * 5 3 2 37 37 H 1.09003 * 109.47112 * 179.97438 * 5 3 2 38 38 H 1.07998 * 119.99935 * 0.02562 * 7 6 3 39 39 H 1.07998 * 119.99607 * 179.97438 * 8 7 6 40 40 H 1.08993 * 109.47181 * 335.27185 * 10 9 8 41 41 H 1.09002 * 109.46859 * 215.27446 * 10 9 8 42 42 H 0.97003 * 120.00080 * 179.97438 * 15 14 12 43 43 H 1.08997 * 109.47299 * 210.00103 * 20 11 10 44 44 H 1.09000 * 109.46819 * 330.00415 * 20 11 10 45 45 H 1.08996 * 109.47635 * 299.99919 * 24 23 21 46 46 H 1.09003 * 109.46987 * 60.00341 * 24 23 21 47 47 H 1.09008 * 109.46776 * 179.97438 * 24 23 21 48 48 H 1.07997 * 119.99949 * 179.73266 * 25 9 8 49 49 H 1.08001 * 120.00282 * 180.23571 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4425 -0.0006 7 6 4.2382 2.6396 -0.0013 8 6 5.6206 2.6395 -0.0024 9 6 6.3117 1.4424 -0.0034 10 6 7.8187 1.4424 -0.0052 11 7 8.3086 1.3151 1.3695 12 6 8.6209 2.4359 2.0916 13 1 9.0648 2.3408 3.0715 14 6 8.3669 3.6945 1.5640 15 7 7.9178 3.8135 0.3326 16 14 8.6624 5.2194 2.6019 17 1 10.0565 5.6906 2.4035 18 1 7.7157 6.2878 2.1925 19 1 8.4496 4.8918 4.0346 20 6 8.4588 -0.0110 1.9739 21 6 9.8451 -0.5341 1.6991 22 8 10.6272 0.1320 1.0633 23 8 10.2106 -1.7408 2.1599 24 6 11.5607 -2.1808 1.8569 25 6 5.6205 0.2452 -0.0086 26 6 4.2382 0.2452 -0.0020 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8937 3.1913 1.2494 33 1 0.4400 2.1637 1.2492 34 1 1.8933 1.6499 2.1392 35 1 1.8934 1.6498 -2.1392 36 1 0.4401 2.1637 -1.2493 37 1 1.8930 3.1915 -1.2490 38 1 3.6983 3.5749 -0.0009 39 1 6.1606 3.5748 -0.0033 40 1 8.1815 2.3758 -0.4354 41 1 8.1813 0.6035 -0.5993 42 1 7.7400 4.6930 -0.0360 43 1 8.3043 0.0608 3.0505 44 1 7.7223 -0.6909 1.5457 45 1 11.6938 -2.2275 0.7761 46 1 12.2762 -1.4762 2.2809 47 1 11.7259 -3.1688 2.2867 48 1 6.1605 -0.6900 -0.0137 49 1 3.6981 -0.6901 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352043138.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:29 Heat of formation + Delta-G solvation = -41.815114 kcal Electronic energy + Delta-G solvation = -27766.225544 eV Core-core repulsion = 24080.181106 eV Total energy + Delta-G solvation = -3686.044438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23091 -40.65030 -38.51586 -37.36103 -36.56777 -33.62676 -32.33271 -31.52400 -30.39966 -29.59522 -28.08978 -27.67476 -27.38026 -25.11560 -24.06630 -22.70978 -22.02470 -21.41925 -19.47047 -19.08283 -18.48667 -17.64362 -17.28620 -17.04254 -16.78850 -15.82485 -15.75558 -15.52806 -15.31603 -15.23047 -14.76939 -14.43203 -14.30674 -14.21184 -14.20080 -14.01459 -13.43359 -13.16015 -12.93474 -12.87512 -12.83133 -12.76973 -12.65190 -12.56557 -12.27605 -12.12295 -12.05370 -11.98326 -11.91583 -11.67938 -11.51062 -11.42327 -11.39864 -11.16647 -10.96517 -10.64567 -9.41559 -9.04536 -8.87754 -7.49298 -5.28063 0.80887 0.94622 1.42590 1.49258 1.51581 1.58598 1.95200 2.50785 3.16668 3.31498 3.76012 3.84381 3.90989 4.15668 4.21986 4.30372 4.33239 4.36836 4.43927 4.47612 4.50620 4.58222 4.59446 4.64812 4.67027 4.71527 4.83064 4.88213 4.91892 5.01443 5.05113 5.07685 5.17541 5.22602 5.24058 5.28869 5.42791 5.47001 5.51142 5.54612 5.58208 5.63388 5.72256 5.86472 5.96496 6.15795 6.39607 6.54428 6.72808 7.00332 7.25133 7.81088 8.12401 9.15445 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.004164 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2409.098880 B = 6722.690446 C = 8507.324097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.019 4.019 4 C -0.136 4.136 5 C -0.135 4.135 6 C -0.086 4.086 7 C -0.144 4.144 8 C -0.116 4.116 9 C -0.081 4.081 10 C 0.148 3.852 11 N -0.572 5.572 12 C -0.236 4.236 13 H 0.075 0.925 14 C -0.052 4.052 15 N -0.908 5.908 16 Si 0.975 3.025 17 H -0.294 1.294 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.151 3.849 21 C 0.424 3.576 22 O -0.537 6.537 23 O -0.372 6.372 24 C 0.028 3.972 25 C -0.137 4.137 26 C -0.139 4.139 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.149 0.851 41 H -0.003 1.003 42 H 0.250 0.750 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.052 0.948 46 H 0.050 0.950 47 H 0.134 0.866 48 H 0.112 0.888 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.310 -9.045 0.373 14.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.019 4.019 4 C -0.193 4.193 5 C -0.192 4.192 6 C -0.087 4.087 7 C -0.162 4.162 8 C -0.135 4.135 9 C -0.083 4.083 10 C 0.024 3.976 11 N -0.290 5.290 12 C -0.365 4.365 13 H 0.092 0.908 14 C -0.243 4.243 15 N -0.560 5.560 16 Si 0.804 3.196 17 H -0.222 1.222 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.020 3.980 21 C 0.265 3.735 22 O -0.425 6.425 23 O -0.288 6.288 24 C -0.066 4.066 25 C -0.156 4.156 26 C -0.157 4.157 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.128 0.872 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.015 0.985 42 H 0.063 0.937 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.152 0.848 48 H 0.130 0.870 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.051 -8.677 0.140 14.051 hybrid contribution 1.132 0.802 0.292 1.417 sum -9.919 -7.876 0.432 12.673 Atomic orbital electron populations 1.21887 0.94496 1.02098 1.02410 1.21609 0.96837 0.94694 1.01753 1.19465 0.89372 0.96750 0.96313 1.21903 1.01545 0.99537 0.96314 1.21897 1.01541 0.99588 0.96197 1.19956 0.95585 0.92700 1.00436 1.21175 0.94239 0.97609 1.03215 1.22650 0.93650 1.01943 0.95238 1.20618 0.97732 0.92845 0.97075 1.21251 0.88949 1.03494 0.83954 1.44103 1.72233 1.00045 1.12600 1.19705 1.32559 0.85447 0.98809 0.90756 1.25338 1.01265 0.99727 0.97973 1.69329 1.51474 1.20983 1.14207 0.85130 0.76772 0.79444 0.78224 1.22181 1.21276 1.20193 1.20729 0.88368 0.87971 1.00892 1.26844 0.93187 0.78379 0.75114 1.90595 1.54653 1.58552 1.38704 1.86570 1.34638 1.35488 1.72075 1.23406 0.80123 1.01574 1.01490 1.21217 0.94819 0.97176 1.02341 1.21154 0.93453 0.98151 1.02914 0.92131 0.92103 0.91935 0.91967 0.92192 0.93584 0.90328 0.93592 0.93241 0.90408 0.93436 0.87150 0.83222 0.83502 0.98527 0.93712 0.87778 0.87749 0.92951 0.93121 0.84770 0.87036 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.21 71.98 0.66 -1.73 16 2 C -0.11 -2.30 3.65 30.59 0.11 -2.18 16 3 C -0.02 -0.47 0.63 -52.93 -0.03 -0.50 16 4 C -0.14 -3.17 7.94 71.98 0.57 -2.60 16 5 C -0.14 -3.02 7.93 71.98 0.57 -2.45 16 6 C -0.09 -2.83 4.76 -19.86 -0.09 -2.92 16 7 C -0.14 -5.50 8.71 22.27 0.19 -5.30 16 8 C -0.12 -5.27 9.21 22.27 0.21 -5.06 16 9 C -0.08 -3.62 5.46 -19.87 -0.11 -3.73 16 10 C 0.15 7.34 5.29 85.64 0.45 7.79 16 11 N -0.57 -28.16 2.00 -710.68 -1.42 -29.58 16 12 C -0.24 -12.55 9.82 84.04 0.82 -11.73 16 13 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 14 C -0.05 -2.76 5.45 84.86 0.46 -2.30 16 15 N -0.91 -48.28 5.73 21.65 0.12 -48.15 16 16 Si 0.98 43.96 29.56 68.60 2.03 45.99 16 17 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 18 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 20 C 0.15 6.08 6.28 85.63 0.54 6.62 16 21 C 0.42 17.44 8.03 71.24 0.57 18.01 16 22 O -0.54 -26.55 16.18 21.98 0.36 -26.20 16 23 O -0.37 -12.43 10.57 -51.45 -0.54 -12.97 16 24 C 0.03 0.73 10.56 113.37 1.20 1.92 16 25 C -0.14 -5.24 9.35 22.27 0.21 -5.03 16 26 C -0.14 -4.62 8.98 22.27 0.20 -4.42 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 29 H 0.06 0.91 6.43 -2.39 -0.02 0.90 16 30 H 0.06 1.30 7.51 -2.39 -0.02 1.28 16 31 H 0.06 1.28 7.52 -2.38 -0.02 1.26 16 32 H 0.05 1.15 7.39 -2.39 -0.02 1.14 16 33 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 34 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.36 6.43 -2.39 -0.02 1.35 16 37 H 0.05 1.13 7.39 -2.39 -0.02 1.11 16 38 H 0.11 3.88 7.10 -2.91 -0.02 3.86 16 39 H 0.15 7.50 4.55 -3.26 -0.01 7.48 16 40 H 0.15 8.31 4.55 -62.17 -0.28 8.03 16 41 H 0.00 -0.17 8.08 -2.39 -0.02 -0.19 16 42 H 0.25 12.92 8.08 -92.71 -0.75 12.17 16 43 H 0.10 3.84 8.04 -2.39 -0.02 3.82 16 44 H 0.10 3.73 7.05 -2.39 -0.02 3.71 16 45 H 0.05 1.40 8.13 -2.39 -0.02 1.38 16 46 H 0.05 1.38 8.13 -2.39 -0.02 1.36 16 47 H 0.13 2.29 8.14 -2.38 -0.02 2.27 16 48 H 0.11 3.90 7.43 -2.91 -0.02 3.88 16 49 H 0.14 3.68 5.90 -2.91 -0.02 3.67 16 Total: -1.00 -62.87 379.56 7.76 -55.11 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.69 Total: 31.43 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 6.53 Total: -15.62 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -1.30 Total: -77.74 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -0.19 Total: -39.17 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -62.87 7.76 -55.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352043138.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.294 kcal (2) G-P(sol) polarization free energy of solvation -62.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds