Wall clock time and date at job start Tue Mar 31 2020 13:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46717 * 2 1 4 4 C 1.53002 * 109.46865 * 119.99434 * 2 1 3 5 5 H 1.08998 * 112.79309 * 310.81518 * 4 2 1 6 6 C 1.53516 * 113.47550 * 81.62266 * 4 2 1 7 7 C 1.53510 * 83.57607 * 140.78764 * 6 4 2 8 8 N 1.47472 * 87.93216 * 333.97562 * 7 6 4 9 9 C 1.46902 * 111.00162 * 138.69885 * 8 7 6 10 10 C 1.53004 * 109.46736 * 74.02795 * 9 8 7 11 11 H 1.08991 * 109.47277 * 305.00152 * 10 9 8 12 12 O 1.42897 * 109.46891 * 65.00311 * 10 9 8 13 13 C 1.52999 * 109.47285 * 185.00278 * 10 9 8 14 14 O 1.42900 * 109.47436 * 175.00204 * 13 10 9 15 15 C 1.35675 * 116.99923 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81955 * 359.97438 * 15 14 13 17 17 C 1.36437 * 120.18406 * 180.02562 * 16 15 14 18 18 C 1.40835 * 119.81054 * 359.97438 * 17 16 15 19 19 C 1.41218 * 120.17461 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00282 * 24.55254 * 19 18 17 21 21 C 1.39893 * 119.99887 * 204.55989 * 19 18 17 22 22 N 1.30882 * 120.00074 * 17.94089 * 21 19 18 23 23 Si 1.86796 * 120.00088 * 197.94750 * 21 19 18 24 24 H 1.48501 * 109.47159 * 89.99717 * 23 21 19 25 25 H 1.48504 * 109.46954 * 209.99605 * 23 21 19 26 26 H 1.48497 * 109.47139 * 329.99274 * 23 21 19 27 27 C 1.40827 * 119.64286 * 0.02562 * 18 17 16 28 28 C 1.36439 * 119.81580 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.46802 * 60.00602 * 1 2 3 30 30 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47480 * 300.00037 * 1 2 3 32 32 H 1.08995 * 109.47336 * 239.99430 * 2 1 3 33 33 H 1.09009 * 109.47044 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47338 * 299.99625 * 3 2 1 35 35 H 1.08995 * 109.47683 * 59.99642 * 3 2 1 36 36 H 1.08999 * 114.16902 * 254.43750 * 6 4 2 37 37 H 1.09001 * 114.16744 * 26.95352 * 6 4 2 38 38 H 1.08997 * 113.47714 * 219.20882 * 7 6 4 39 39 H 1.09005 * 113.47322 * 88.74218 * 7 6 4 40 40 H 1.08994 * 109.47348 * 314.03470 * 9 8 7 41 41 H 1.08997 * 109.47601 * 194.02470 * 9 8 7 42 42 H 0.96700 * 114.00124 * 60.00300 * 12 10 9 43 43 H 1.09000 * 109.47124 * 54.99784 * 13 10 9 44 44 H 1.09007 * 109.46799 * 295.00156 * 13 10 9 45 45 H 1.08002 * 119.90827 * 0.02562 * 16 15 14 46 46 H 1.07999 * 120.09462 * 180.27336 * 17 16 15 47 47 H 0.96994 * 120.00609 * 180.02562 * 22 21 19 48 48 H 1.08006 * 120.09193 * 179.97438 * 27 18 17 49 49 H 1.07988 * 119.91145 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.5615 -0.3710 2.1639 6 6 2.0504 -2.2501 1.1115 7 6 3.3748 -2.1378 1.8796 8 7 3.5112 -0.7727 1.3386 9 6 4.0090 0.1530 2.3649 10 6 5.4982 -0.1039 2.6041 11 1 5.6501 -1.1536 2.8552 12 8 6.2325 0.2138 1.4202 13 6 5.9879 0.7726 3.7587 14 8 7.3471 0.4494 4.0588 15 6 7.9370 1.1417 5.0656 16 6 7.2157 2.1166 5.7514 17 6 7.8017 2.8175 6.7647 18 6 9.1393 2.5528 7.1170 19 6 9.7535 3.2742 8.1642 20 1 9.1488 3.7199 8.9401 21 6 11.1453 3.4115 8.1965 22 7 11.8496 3.1942 7.1149 23 14 11.9987 3.9047 9.7832 24 1 12.3497 2.6862 10.5560 25 1 13.2356 4.6626 9.4651 26 1 11.0893 4.7576 10.5899 27 6 9.8612 1.5658 6.4187 28 6 9.2606 0.8737 5.4078 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.2560 -2.7533 1.6627 37 1 2.1544 -2.6050 0.0862 38 1 4.1427 -2.8247 1.5237 39 1 3.2524 -2.1656 2.9624 40 1 3.4596 -0.0040 3.2930 41 1 3.8670 1.1798 2.0277 42 1 6.1436 1.1343 1.1373 43 1 5.3692 0.5940 4.6381 44 1 5.9186 1.8222 3.4727 45 1 6.1899 2.3180 5.4802 46 1 7.2398 3.5699 7.2983 47 1 12.8146 3.2891 7.1372 48 1 10.8876 1.3571 6.6826 49 1 9.8126 0.1162 4.8716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353019030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:24 Heat of formation + Delta-G solvation = -47.227928 kcal Electronic energy + Delta-G solvation = -26369.343716 eV Core-core repulsion = 22683.064560 eV Total energy + Delta-G solvation = -3686.279155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.78984 -38.93636 -37.27723 -35.98185 -34.85384 -33.31599 -31.78168 -29.93463 -29.14000 -28.48313 -27.20724 -25.91283 -25.01980 -24.13758 -22.09145 -20.98414 -20.59357 -20.58851 -19.87781 -17.38554 -17.26861 -16.53978 -16.40711 -15.88222 -15.53375 -15.25025 -14.86929 -14.60934 -14.30192 -14.06756 -13.93481 -13.47217 -13.31459 -12.90177 -12.84844 -12.59150 -12.43863 -12.28493 -12.19642 -12.15219 -11.79841 -11.70383 -11.42385 -11.23024 -11.17275 -11.12672 -11.04363 -10.92872 -10.77510 -10.61292 -10.34239 -9.97618 -9.86813 -9.80387 -9.33317 -9.08534 -9.02561 -7.64777 -7.03535 -6.72294 -4.25858 2.77553 2.94617 3.08443 3.11669 3.21234 3.46302 3.94667 3.97975 4.19855 4.37951 4.45146 4.61498 4.70322 4.77513 4.79985 4.94565 5.01199 5.03599 5.13275 5.18264 5.24651 5.34591 5.39911 5.43675 5.46339 5.55471 5.58485 5.60096 5.65522 5.67093 5.74383 5.87818 5.92426 6.04364 6.05311 6.07170 6.18994 6.23090 6.72004 6.81136 6.97397 7.10882 7.18385 7.46136 7.55369 7.76588 7.78962 8.00315 8.20199 8.45147 8.65189 8.89648 8.98492 10.22096 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.002028 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.296292 B =13806.766835 C =14043.761312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.077 4.077 3 C -0.147 4.147 4 C 0.030 3.970 5 H 0.075 0.925 6 C -0.141 4.141 7 C -0.006 4.006 8 N -0.451 5.451 9 C -0.010 4.010 10 C 0.119 3.881 11 H 0.102 0.898 12 O -0.540 6.540 13 C 0.038 3.962 14 O -0.317 6.317 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.074 3.926 22 N -0.798 5.798 23 Si 0.908 3.092 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.263 1.263 27 C -0.133 4.133 28 C -0.119 4.119 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.370 0.630 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.094 0.906 47 H 0.280 0.720 48 H 0.126 0.874 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.681 -6.664 -11.082 22.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 C -0.204 4.204 4 C -0.079 4.079 5 H 0.093 0.907 6 C -0.179 4.179 7 C -0.135 4.135 8 N -0.173 5.173 9 C -0.139 4.139 10 C 0.059 3.941 11 H 0.120 0.880 12 O -0.343 6.343 13 C -0.039 4.039 14 O -0.233 6.233 15 C -0.052 4.052 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.085 3.915 19 C -0.494 4.494 20 H 0.094 0.906 21 C -0.143 4.143 22 N -0.424 5.424 23 Si 0.733 3.267 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.153 4.153 28 C -0.138 4.138 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.102 0.898 42 H 0.216 0.784 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.091 0.909 48 H 0.144 0.856 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.730 -7.254 -11.804 22.501 hybrid contribution -0.359 1.115 1.703 2.067 sum -18.089 -6.139 -10.100 21.609 Atomic orbital electron populations 1.21813 0.95203 1.01662 1.01735 1.20987 0.94911 0.96410 0.97308 1.21806 1.01946 0.95479 1.01165 1.23526 0.90090 0.95780 0.98543 0.90711 1.23206 0.97391 0.95570 1.01724 1.23760 0.98235 0.93115 0.98416 1.68941 1.10941 1.01894 1.35482 1.23339 0.96592 0.99105 0.94902 1.21768 0.88154 1.00099 0.84040 0.87983 1.86637 1.71879 1.32751 1.43076 1.23129 0.84557 0.98664 0.97560 1.85891 1.24612 1.60811 1.51944 1.18629 0.93661 0.99050 0.93877 1.20387 0.98065 0.99872 1.00386 1.20558 0.97268 1.03188 1.00838 1.17600 0.90904 0.90819 0.92152 1.19462 0.91421 1.30078 1.08398 0.90557 1.25886 0.97912 0.93360 0.97100 1.69833 1.08172 1.36922 1.27493 0.86318 0.78844 0.79335 0.82230 1.19327 1.20378 1.18734 1.20988 1.00551 0.96353 0.97372 1.19847 0.91814 1.02009 1.00109 0.92534 0.92679 0.92881 0.90535 0.91765 0.92913 0.93306 0.90832 0.88854 0.89410 0.91346 0.93095 0.89798 0.78351 0.92708 0.92926 0.89029 0.88783 0.90897 0.85637 0.88418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.18 37.16 0.34 -0.56 16 2 C -0.08 -0.58 2.85 -90.62 -0.26 -0.84 16 3 C -0.15 -1.15 8.52 37.15 0.32 -0.84 16 4 C 0.03 0.24 2.41 -71.43 -0.17 0.07 16 5 H 0.07 0.59 7.77 -51.93 -0.40 0.19 16 6 C -0.14 -1.02 7.99 -26.20 -0.21 -1.23 16 7 C -0.01 -0.06 6.93 -7.55 -0.05 -0.11 16 8 N -0.45 -4.45 5.68 -236.50 -1.34 -5.79 16 9 C -0.01 -0.10 4.22 -3.82 -0.02 -0.12 16 10 C 0.12 1.57 3.33 -26.73 -0.09 1.48 16 11 H 0.10 1.43 7.55 -51.93 -0.39 1.04 16 12 O -0.54 -7.84 13.25 -40.08 -0.53 -8.37 16 13 C 0.04 0.60 4.36 37.16 0.16 0.76 16 14 O -0.32 -6.64 10.09 -23.57 -0.24 -6.88 16 15 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 16 C -0.17 -3.83 8.96 -39.83 -0.36 -4.19 16 17 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 18 C 0.09 2.36 5.57 -106.80 -0.60 1.76 16 19 C -0.46 -12.37 9.04 -37.83 -0.34 -12.71 16 20 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 21 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 22 N -0.80 -20.83 10.96 55.55 0.61 -20.22 16 23 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 27 C -0.13 -3.53 8.64 -39.25 -0.34 -3.87 16 28 C -0.12 -2.94 9.92 -39.83 -0.40 -3.34 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.63 7.97 -51.93 -0.41 0.21 16 33 H 0.06 0.58 7.02 -51.92 -0.36 0.22 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.67 8.00 -51.93 -0.42 0.26 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.57 7.70 -51.93 -0.40 0.17 16 40 H 0.05 0.48 7.56 -51.93 -0.39 0.09 16 41 H 0.08 0.80 7.00 -51.93 -0.36 0.44 16 42 H 0.37 4.20 9.05 45.56 0.41 4.61 16 43 H 0.05 0.81 7.65 -51.93 -0.40 0.41 16 44 H 0.05 0.79 7.64 -51.92 -0.40 0.39 16 45 H 0.09 1.79 6.27 -52.49 -0.33 1.47 16 46 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 47 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 48 H 0.13 3.39 6.16 -52.48 -0.32 3.07 16 49 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 391.06 15.07 5.89 5.89 Total: -1.00 -29.69 391.06 -10.91 -40.60 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.53 Total: 8.73 kcal Atomic # 6 Polarization: -24.98 SS G_CDS: -2.74 Total: -27.71 kcal Atomic # 7 Polarization: -25.28 SS G_CDS: -0.73 Total: -26.02 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.77 Total: -15.25 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.69 -10.91 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353019030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.626 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds