Wall clock time and date at job start Tue Mar 31 2020 13:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46717 * 2 1 4 4 C 1.53002 * 109.46865 * 119.99434 * 2 1 3 5 5 H 1.08998 * 112.79309 * 310.81518 * 4 2 1 6 6 C 1.53516 * 113.47550 * 81.62266 * 4 2 1 7 7 C 1.53510 * 83.57607 * 140.78764 * 6 4 2 8 8 N 1.47472 * 87.93216 * 333.97562 * 7 6 4 9 9 C 1.46902 * 111.00162 * 138.69885 * 8 7 6 10 10 C 1.53004 * 109.46736 * 74.02795 * 9 8 7 11 11 H 1.08991 * 109.47277 * 305.00152 * 10 9 8 12 12 O 1.42897 * 109.46891 * 65.00311 * 10 9 8 13 13 C 1.52999 * 109.47285 * 185.00278 * 10 9 8 14 14 O 1.42900 * 109.47436 * 175.00204 * 13 10 9 15 15 C 1.35675 * 116.99923 * 179.97438 * 14 13 10 16 16 C 1.39315 * 119.81955 * 359.97438 * 15 14 13 17 17 C 1.36437 * 120.18406 * 180.02562 * 16 15 14 18 18 C 1.40835 * 119.81054 * 359.97438 * 17 16 15 19 19 C 1.41218 * 120.17461 * 179.97438 * 18 17 16 20 20 H 1.07999 * 120.00282 * 24.55254 * 19 18 17 21 21 C 1.39893 * 119.99887 * 204.55989 * 19 18 17 22 22 N 1.30882 * 120.00074 * 17.94089 * 21 19 18 23 23 Si 1.86796 * 120.00088 * 197.94750 * 21 19 18 24 24 H 1.48501 * 109.47159 * 89.99717 * 23 21 19 25 25 H 1.48504 * 109.46954 * 209.99605 * 23 21 19 26 26 H 1.48497 * 109.47139 * 329.99274 * 23 21 19 27 27 C 1.40827 * 119.64286 * 0.02562 * 18 17 16 28 28 C 1.36439 * 119.81580 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.46802 * 60.00602 * 1 2 3 30 30 H 1.09003 * 109.47007 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47480 * 300.00037 * 1 2 3 32 32 H 1.08995 * 109.47336 * 239.99430 * 2 1 3 33 33 H 1.09009 * 109.47044 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47338 * 299.99625 * 3 2 1 35 35 H 1.08995 * 109.47683 * 59.99642 * 3 2 1 36 36 H 1.08999 * 114.16902 * 254.43750 * 6 4 2 37 37 H 1.09001 * 114.16744 * 26.95352 * 6 4 2 38 38 H 1.08997 * 113.47714 * 219.20882 * 7 6 4 39 39 H 1.09005 * 113.47322 * 88.74218 * 7 6 4 40 40 H 1.08994 * 109.47348 * 314.03470 * 9 8 7 41 41 H 1.08997 * 109.47601 * 194.02470 * 9 8 7 42 42 H 0.96700 * 114.00124 * 60.00300 * 12 10 9 43 43 H 1.09000 * 109.47124 * 54.99784 * 13 10 9 44 44 H 1.09007 * 109.46799 * 295.00156 * 13 10 9 45 45 H 1.08002 * 119.90827 * 0.02562 * 16 15 14 46 46 H 1.07999 * 120.09462 * 180.27336 * 17 16 15 47 47 H 0.96994 * 120.00609 * 180.02562 * 22 21 19 48 48 H 1.08006 * 120.09193 * 179.97438 * 27 18 17 49 49 H 1.07988 * 119.91145 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.5615 -0.3710 2.1639 6 6 2.0504 -2.2501 1.1115 7 6 3.3748 -2.1378 1.8796 8 7 3.5112 -0.7727 1.3386 9 6 4.0090 0.1530 2.3649 10 6 5.4982 -0.1039 2.6041 11 1 5.6501 -1.1536 2.8552 12 8 6.2325 0.2138 1.4202 13 6 5.9879 0.7726 3.7587 14 8 7.3471 0.4494 4.0588 15 6 7.9370 1.1417 5.0656 16 6 7.2157 2.1166 5.7514 17 6 7.8017 2.8175 6.7647 18 6 9.1393 2.5528 7.1170 19 6 9.7535 3.2742 8.1642 20 1 9.1488 3.7199 8.9401 21 6 11.1453 3.4115 8.1965 22 7 11.8496 3.1942 7.1149 23 14 11.9987 3.9047 9.7832 24 1 12.3497 2.6862 10.5560 25 1 13.2356 4.6626 9.4651 26 1 11.0893 4.7576 10.5899 27 6 9.8612 1.5658 6.4187 28 6 9.2606 0.8737 5.4078 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.2560 -2.7533 1.6627 37 1 2.1544 -2.6050 0.0862 38 1 4.1427 -2.8247 1.5237 39 1 3.2524 -2.1656 2.9624 40 1 3.4596 -0.0040 3.2930 41 1 3.8670 1.1798 2.0277 42 1 6.1436 1.1343 1.1373 43 1 5.3692 0.5940 4.6381 44 1 5.9186 1.8222 3.4727 45 1 6.1899 2.3180 5.4802 46 1 7.2398 3.5699 7.2983 47 1 12.8146 3.2891 7.1372 48 1 10.8876 1.3571 6.6826 49 1 9.8126 0.1162 4.8716 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353019030.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:23 Heat of formation + Delta-G solvation = -66.069753 kcal Electronic energy + Delta-G solvation = -26370.160759 eV Core-core repulsion = 22683.064560 eV Total energy + Delta-G solvation = -3687.096198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.50448 -40.57141 -38.70019 -37.50385 -35.46818 -35.19484 -32.75690 -31.71204 -30.97091 -29.64780 -27.80921 -26.78418 -26.51434 -25.31541 -23.28399 -22.50431 -22.28044 -21.49837 -20.51003 -19.27156 -18.78594 -17.77283 -17.47882 -17.06377 -16.64161 -16.42053 -16.09998 -15.75196 -15.50314 -15.38108 -15.17033 -14.79744 -14.42340 -14.09775 -13.96802 -13.90894 -13.58286 -13.54000 -13.29170 -13.05613 -12.97442 -12.82282 -12.78786 -12.62989 -12.44279 -12.33889 -11.98532 -11.92219 -11.76965 -11.67897 -11.60645 -11.56659 -11.22026 -11.00588 -10.90920 -10.83705 -9.78287 -9.58394 -8.94662 -8.60658 -6.24239 0.93112 1.00596 1.39274 1.52119 1.52621 2.22000 2.35657 2.71200 3.05019 3.46039 3.54452 3.68374 3.73990 3.80784 3.95025 4.01717 4.13643 4.19310 4.25516 4.27552 4.33031 4.39896 4.42073 4.45143 4.51607 4.58601 4.77844 4.81789 4.84105 4.85205 4.94263 4.97927 5.04744 5.05454 5.10107 5.19782 5.22030 5.26968 5.28335 5.38065 5.48139 5.54674 5.56870 5.62610 5.86490 6.04189 6.12329 6.24536 6.54952 6.77719 6.83053 6.93642 7.08274 8.35969 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.033314 B = 0.002028 C = 0.001993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.296292 B =13806.766835 C =14043.761312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.076 4.076 3 C -0.145 4.145 4 C 0.032 3.968 5 H 0.081 0.919 6 C -0.131 4.131 7 C -0.013 4.013 8 N -0.469 5.469 9 C 0.000 4.000 10 C 0.128 3.872 11 H 0.090 0.910 12 O -0.560 6.560 13 C 0.031 3.969 14 O -0.332 6.332 15 C -0.001 4.001 16 C -0.164 4.164 17 C -0.208 4.208 18 C 0.054 3.946 19 C -0.498 4.498 20 H 0.077 0.923 21 C 0.032 3.968 22 N -0.831 5.831 23 Si 0.984 3.016 24 H -0.263 1.263 25 H -0.269 1.269 26 H -0.257 1.257 27 C -0.153 4.153 28 C -0.135 4.135 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.091 0.909 42 H 0.382 0.618 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.129 0.871 46 H 0.107 0.893 47 H 0.287 0.713 48 H 0.110 0.890 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 -6.461 -11.003 24.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.095 4.095 3 C -0.202 4.202 4 C -0.077 4.077 5 H 0.099 0.901 6 C -0.169 4.169 7 C -0.141 4.141 8 N -0.191 5.191 9 C -0.129 4.129 10 C 0.068 3.932 11 H 0.108 0.892 12 O -0.367 6.367 13 C -0.046 4.046 14 O -0.248 6.248 15 C -0.045 4.045 16 C -0.183 4.183 17 C -0.227 4.227 18 C 0.052 3.948 19 C -0.528 4.528 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.458 5.458 23 Si 0.805 3.195 24 H -0.188 1.188 25 H -0.194 1.194 26 H -0.181 1.181 27 C -0.172 4.172 28 C -0.153 4.153 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.146 0.854 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.128 0.872 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -19.770 -7.052 -11.748 24.054 hybrid contribution 0.159 0.991 1.518 1.820 sum -19.611 -6.061 -10.230 22.934 Atomic orbital electron populations 1.21774 0.93970 1.02209 1.02042 1.20975 0.95880 0.95924 0.96724 1.21782 1.00997 0.95899 1.01530 1.23561 0.88781 0.96366 0.98944 0.90089 1.23169 0.96863 0.95186 1.01648 1.23820 0.98872 0.92505 0.98949 1.68944 1.12412 1.02218 1.35546 1.23205 0.94242 0.99697 0.95706 1.21705 0.89890 0.98862 0.82713 0.89176 1.86600 1.72521 1.34022 1.43509 1.23504 0.82001 0.99978 0.99077 1.85883 1.27445 1.60626 1.50826 1.18698 0.93290 0.98593 0.93897 1.20687 0.99619 0.98770 0.99193 1.20816 0.96744 1.03722 1.01454 1.17964 0.92263 0.91511 0.93041 1.19716 0.92639 1.31409 1.08990 0.90476 1.26771 0.98111 0.92908 1.00432 1.69892 1.08805 1.37599 1.29511 0.85179 0.77721 0.79113 0.77530 1.18799 1.19406 1.18107 1.20906 1.00211 0.97430 0.98687 1.20011 0.93011 1.02271 1.00053 0.92198 0.92030 0.92612 0.91448 0.93157 0.92503 0.93009 0.89138 0.88952 0.90573 0.90765 0.91942 0.89027 0.76918 0.91279 0.91796 0.85364 0.87488 0.90195 0.87221 0.87660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.18 71.98 0.66 -0.76 16 2 C -0.08 -1.00 2.85 -10.79 -0.03 -1.03 16 3 C -0.14 -2.04 8.52 71.98 0.61 -1.43 16 4 C 0.03 0.45 2.41 42.19 0.10 0.55 16 5 H 0.08 1.04 7.77 -2.39 -0.02 1.03 16 6 C -0.13 -1.63 7.99 30.94 0.25 -1.38 16 7 C -0.01 -0.21 6.93 83.58 0.58 0.37 16 8 N -0.47 -8.51 5.68 -902.16 -5.12 -13.63 16 9 C 0.00 0.01 4.22 86.30 0.36 0.37 16 10 C 0.13 3.18 3.33 30.60 0.10 3.28 16 11 H 0.09 2.46 7.55 -2.39 -0.02 2.44 16 12 O -0.56 -15.74 13.25 -144.34 -1.91 -17.65 16 13 C 0.03 0.90 4.36 71.98 0.31 1.21 16 14 O -0.33 -13.53 10.09 -85.29 -0.86 -14.39 16 15 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 16 C -0.16 -7.23 8.96 22.11 0.20 -7.03 16 17 C -0.21 -10.23 9.74 22.48 0.22 -10.01 16 18 C 0.05 2.99 5.57 -21.28 -0.12 2.87 16 19 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16 20 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 21 C 0.03 1.62 5.13 85.24 0.44 2.06 16 22 N -0.83 -44.42 10.96 21.82 0.24 -44.18 16 23 Si 0.98 38.66 29.60 68.60 2.03 40.69 16 24 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 25 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 27 C -0.15 -8.36 8.64 22.48 0.19 -8.17 16 28 C -0.13 -6.78 9.92 22.11 0.22 -6.56 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 1.01 7.97 -2.39 -0.02 1.00 16 33 H 0.05 0.85 7.02 -2.38 -0.02 0.83 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 1.17 8.00 -2.39 -0.02 1.16 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.07 1.11 7.70 -2.38 -0.02 1.09 16 40 H 0.06 1.00 7.56 -2.39 -0.02 0.98 16 41 H 0.09 1.53 7.00 -2.39 -0.02 1.52 16 42 H 0.38 8.25 9.05 -74.06 -0.67 7.58 16 43 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 44 H 0.06 1.74 7.64 -2.38 -0.02 1.72 16 45 H 0.13 4.62 6.27 -2.91 -0.02 4.60 16 46 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 47 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 48 H 0.11 6.22 6.16 -2.91 -0.02 6.20 16 49 H 0.11 4.98 8.06 -2.92 -0.02 4.95 16 Total: -1.00 -64.47 391.06 -0.90 -65.37 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.26 Total: 36.24 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 4.47 Total: -52.44 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -4.88 Total: -57.81 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -2.77 Total: -32.05 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -64.47 -0.90 -65.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353019030.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.704 kcal (2) G-P(sol) polarization free energy of solvation -64.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds