Wall clock time and date at job start Tue Mar 31 2020 13:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 C 1.52996 * 109.47375 * 119.99925 * 2 1 3 5 5 H 1.08999 * 112.79108 * 294.35968 * 4 2 1 6 6 C 1.53511 * 113.47661 * 163.54474 * 4 2 1 7 7 C 1.53510 * 83.57555 * 219.21164 * 6 4 2 8 8 N 1.47476 * 87.93441 * 26.02520 * 7 6 4 9 9 C 1.46891 * 111.00415 * 221.29248 * 8 7 6 10 10 C 1.52996 * 109.47345 * 294.76714 * 9 8 7 11 11 H 1.09008 * 109.47280 * 54.26977 * 10 9 8 12 12 O 1.42899 * 109.47340 * 294.27224 * 10 9 8 13 13 C 1.52997 * 109.47429 * 174.26809 * 10 9 8 14 14 O 1.42903 * 109.47563 * 185.00063 * 13 10 9 15 15 C 1.35675 * 117.00115 * 180.02562 * 14 13 10 16 16 C 1.39305 * 119.82005 * 359.71964 * 15 14 13 17 17 C 1.36441 * 120.18687 * 179.76134 * 16 15 14 18 18 C 1.40832 * 119.80722 * 0.52167 * 17 16 15 19 19 C 1.41220 * 120.17701 * 179.71884 * 18 17 16 20 20 H 1.08001 * 119.99892 * 211.44223 * 19 18 17 21 21 C 1.39891 * 119.99675 * 31.43799 * 19 18 17 22 22 N 1.30878 * 120.00428 * 7.88299 * 21 19 18 23 23 Si 1.86808 * 119.99412 * 187.88575 * 21 19 18 24 24 H 1.48496 * 109.47186 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.46729 * 120.00320 * 23 21 19 26 26 H 1.48496 * 109.46729 * 239.99793 * 23 21 19 27 27 C 1.40834 * 119.64413 * 359.73299 * 18 17 16 28 28 C 1.36440 * 119.80988 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.47230 * 300.00198 * 1 2 3 30 30 H 1.08999 * 109.47173 * 59.99626 * 1 2 3 31 31 H 1.08996 * 109.47633 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46889 * 240.00104 * 2 1 3 33 33 H 1.08999 * 109.47113 * 295.14271 * 3 2 1 34 34 H 1.08998 * 109.47272 * 55.14025 * 3 2 1 35 35 H 1.09002 * 109.46950 * 175.14053 * 3 2 1 36 36 H 1.09001 * 114.16775 * 105.56667 * 6 4 2 37 37 H 1.08995 * 114.34714 * 332.87243 * 6 4 2 38 38 H 1.09000 * 113.47849 * 271.25911 * 7 6 4 39 39 H 1.09002 * 113.52647 * 140.80400 * 7 6 4 40 40 H 1.09002 * 109.47222 * 54.76631 * 9 8 7 41 41 H 1.09004 * 109.47636 * 174.76342 * 9 8 7 42 42 H 0.96701 * 113.99952 * 299.99803 * 12 10 9 43 43 H 1.08996 * 109.47388 * 305.00136 * 13 10 9 44 44 H 1.09003 * 109.47044 * 65.00237 * 13 10 9 45 45 H 1.08001 * 119.90746 * 0.02562 * 16 15 14 46 46 H 1.07997 * 120.09642 * 180.25292 * 17 16 15 47 47 H 0.96999 * 119.99773 * 179.97438 * 22 21 19 48 48 H 1.07999 * 120.09153 * 179.97438 * 27 18 17 49 49 H 1.08000 * 119.90270 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7900 -0.1965 2.1713 6 6 3.5170 -1.1298 1.1592 7 6 3.0299 -2.4014 1.8680 8 7 1.7002 -2.1561 1.2791 9 6 0.6349 -2.4246 2.2541 10 6 0.6278 -3.9139 2.6046 11 1 1.6215 -4.2135 2.9378 12 8 0.2637 -4.6732 1.4501 13 6 -0.3839 -4.1698 3.7233 14 8 -0.3078 -5.5374 4.1309 15 6 -1.1461 -5.9324 5.1219 16 6 -2.0227 -5.0138 5.6949 17 6 -2.8723 -5.4041 6.6886 18 6 -2.8536 -6.7372 7.1422 19 6 -3.7254 -7.1482 8.1744 20 1 -3.4225 -7.9263 8.8593 21 6 -4.9814 -6.5472 8.3097 22 7 -5.4120 -5.7174 7.3937 23 14 -6.0439 -6.9290 9.7979 24 1 -5.3341 -7.8903 10.6795 25 1 -6.3145 -5.6759 10.5474 26 1 -7.3281 -7.5246 9.3495 27 6 -1.9605 -7.6582 6.5612 28 6 -1.1209 -7.2529 5.5651 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.7494 1.9306 -0.9303 34 1 1.6073 1.9809 0.8432 35 1 3.1265 1.4438 0.0871 36 1 4.1877 -0.5140 1.7585 37 1 3.8765 -1.2948 0.1436 38 1 3.0440 -2.3251 2.9552 39 1 3.5051 -3.3120 1.5032 40 1 0.8125 -1.8399 3.1567 41 1 -0.3283 -2.1477 1.8255 42 1 -0.6111 -4.4588 1.0982 43 1 -0.1579 -3.5247 4.5723 44 1 -1.3890 -3.9542 3.3606 45 1 -2.0328 -3.9909 5.3486 46 1 -3.5542 -4.6917 7.1289 47 1 -6.2830 -5.3010 7.4874 48 1 -1.9398 -8.6822 6.9039 49 1 -0.4352 -7.9578 5.1187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353019032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:26 Heat of formation + Delta-G solvation = -66.340962 kcal Electronic energy + Delta-G solvation = -26443.335557 eV Core-core repulsion = 22756.227599 eV Total energy + Delta-G solvation = -3687.107959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53677 -40.59349 -38.70640 -37.51341 -35.47859 -35.16748 -32.73740 -31.58420 -31.14845 -29.61812 -27.81534 -26.80061 -26.53122 -25.28103 -23.36715 -22.66833 -22.11731 -21.46209 -20.52999 -19.27315 -18.73462 -17.92529 -17.50050 -16.96635 -16.66687 -16.42039 -16.11522 -15.76477 -15.48016 -15.44009 -15.17249 -14.76476 -14.36332 -14.21756 -13.91276 -13.82307 -13.61743 -13.46246 -13.35614 -13.23260 -13.01215 -12.82820 -12.78330 -12.69495 -12.39055 -12.33502 -12.02029 -11.94205 -11.72742 -11.63153 -11.60635 -11.57282 -11.22813 -11.03240 -10.95810 -10.85215 -9.80333 -9.60034 -8.84475 -8.55032 -6.27790 0.90462 1.01658 1.39514 1.49018 1.54169 2.23739 2.32762 2.75512 3.02663 3.44119 3.52616 3.65566 3.72859 3.78457 3.92374 3.98612 4.12135 4.18395 4.25028 4.27412 4.33680 4.38233 4.43285 4.44108 4.51576 4.56185 4.77321 4.81306 4.83564 4.85622 4.92974 4.97164 4.98723 5.04447 5.09091 5.14227 5.21330 5.27835 5.35820 5.36535 5.46431 5.49060 5.54292 5.64628 5.93133 6.06005 6.10814 6.21648 6.54920 6.75460 6.80080 6.96200 7.06712 8.42747 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022867 B = 0.002201 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.183494 B =12720.303208 C =13444.977696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.142 4.142 4 C 0.031 3.969 5 H 0.080 0.920 6 C -0.130 4.130 7 C -0.012 4.012 8 N -0.468 5.468 9 C 0.000 4.000 10 C 0.127 3.873 11 H 0.095 0.905 12 O -0.560 6.560 13 C 0.031 3.969 14 O -0.328 6.328 15 C 0.008 3.992 16 C -0.180 4.180 17 C -0.142 4.142 18 C 0.050 3.950 19 C -0.499 4.499 20 H 0.074 0.926 21 C 0.028 3.972 22 N -0.845 5.845 23 Si 0.985 3.015 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.195 4.195 28 C -0.129 4.129 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.383 0.617 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.119 0.881 46 H 0.108 0.892 47 H 0.284 0.716 48 H 0.111 0.889 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.564 14.704 -11.992 22.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.095 4.095 3 C -0.200 4.200 4 C -0.078 4.078 5 H 0.097 0.903 6 C -0.168 4.168 7 C -0.141 4.141 8 N -0.190 5.190 9 C -0.129 4.129 10 C 0.068 3.932 11 H 0.113 0.887 12 O -0.366 6.366 13 C -0.045 4.045 14 O -0.244 6.244 15 C -0.035 4.035 16 C -0.199 4.199 17 C -0.161 4.161 18 C 0.048 3.952 19 C -0.530 4.530 20 H 0.093 0.907 21 C -0.184 4.184 22 N -0.473 5.473 23 Si 0.807 3.193 24 H -0.183 1.183 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.214 4.214 28 C -0.147 4.147 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.232 0.768 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.137 0.863 46 H 0.126 0.874 47 H 0.095 0.905 48 H 0.129 0.871 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.843 14.099 -12.650 22.885 hybrid contribution -1.381 0.434 1.495 2.082 sum 11.461 14.533 -11.155 21.610 Atomic orbital electron populations 1.21795 0.95497 1.01373 1.01605 1.20967 0.95649 0.96075 0.96762 1.21767 1.01425 0.94752 1.02055 1.23595 0.95554 0.89654 0.98950 0.90256 1.23162 0.95546 0.96079 1.02009 1.23782 0.91452 1.00166 0.98696 1.68982 1.01748 1.11216 1.37064 1.23210 0.98798 0.94771 0.96150 1.21756 0.97466 0.90599 0.83423 0.88693 1.86588 1.40118 1.64947 1.44925 1.23489 1.00461 0.82249 0.98325 1.85871 1.58313 1.28461 1.51764 1.18766 0.96157 0.94350 0.94272 1.20821 0.99529 0.98656 1.00909 1.20960 0.99419 0.96349 0.99409 1.17987 0.92360 0.91595 0.93215 1.19710 1.00241 1.19781 1.13298 0.90741 1.26705 0.99268 0.93083 0.99296 1.69858 1.19653 1.24779 1.33033 0.85103 0.77540 0.79119 0.77565 1.18270 1.19018 1.19376 1.20892 1.01868 0.98715 0.99933 1.19925 1.01736 0.93512 0.99565 0.93049 0.92388 0.93315 0.91336 0.92142 0.92674 0.91948 0.89166 0.88791 0.90964 0.90420 0.92085 0.89181 0.76834 0.91506 0.92140 0.86329 0.87412 0.90539 0.87073 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.91 71.98 0.64 -1.48 16 2 C -0.08 -1.03 2.81 -10.79 -0.03 -1.06 16 3 C -0.14 -1.49 9.17 71.98 0.66 -0.83 16 4 C 0.03 0.45 2.38 42.18 0.10 0.56 16 5 H 0.08 1.11 7.62 -2.39 -0.02 1.09 16 6 C -0.13 -1.67 7.72 30.94 0.24 -1.43 16 7 C -0.01 -0.20 6.48 83.57 0.54 0.34 16 8 N -0.47 -8.71 5.94 -902.21 -5.36 -14.07 16 9 C 0.00 -0.01 4.39 86.30 0.38 0.37 16 10 C 0.13 3.18 3.24 30.59 0.10 3.28 16 11 H 0.10 2.53 7.19 -2.38 -0.02 2.51 16 12 O -0.56 -15.59 13.26 -144.34 -1.91 -17.50 16 13 C 0.03 0.94 4.37 71.98 0.31 1.25 16 14 O -0.33 -13.19 10.09 -85.29 -0.86 -14.05 16 15 C 0.01 0.39 6.71 22.79 0.15 0.54 16 16 C -0.18 -8.41 8.96 22.11 0.20 -8.21 16 17 C -0.14 -7.52 8.59 22.48 0.19 -7.33 16 18 C 0.05 2.77 5.53 -21.28 -0.12 2.65 16 19 C -0.50 -27.32 9.04 23.40 0.21 -27.11 16 20 H 0.07 3.93 7.86 -2.91 -0.02 3.90 16 21 C 0.03 1.44 5.29 85.24 0.45 1.89 16 22 N -0.84 -44.93 10.87 21.82 0.24 -44.69 16 23 Si 0.99 38.99 29.57 68.60 2.03 41.02 16 24 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 25 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 26 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 27 C -0.19 -9.79 9.74 22.49 0.22 -9.57 16 28 C -0.13 -6.03 9.92 22.11 0.22 -5.81 16 29 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.83 6.94 -2.39 -0.02 0.81 16 32 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.57 7.90 -2.39 -0.02 0.55 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 38 H 0.07 1.15 7.85 -2.39 -0.02 1.13 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.05 7.56 -2.39 -0.02 1.04 16 41 H 0.09 1.63 7.14 -2.38 -0.02 1.62 16 42 H 0.38 8.33 9.05 -74.06 -0.67 7.66 16 43 H 0.07 1.88 7.64 -2.39 -0.02 1.86 16 44 H 0.06 1.76 7.66 -2.39 -0.02 1.74 16 45 H 0.12 4.77 6.27 -2.91 -0.02 4.75 16 46 H 0.11 5.94 6.32 -2.91 -0.02 5.93 16 47 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 48 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 49 H 0.12 4.96 8.06 -2.91 -0.02 4.94 16 Total: -1.00 -63.60 390.69 -1.14 -64.74 By element: Atomic # 1 Polarization: 36.24 SS G_CDS: 0.26 Total: 36.50 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 4.47 Total: -51.94 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -5.12 Total: -58.76 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -2.77 Total: -31.55 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -63.60 -1.14 -64.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353019032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.600 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds