Wall clock time and date at job start Tue Mar 31 2020 13:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47379 * 2 1 4 4 C 1.53005 * 109.46882 * 119.99979 * 2 1 3 5 5 H 1.09002 * 112.78620 * 49.72544 * 4 2 1 6 6 C 1.53512 * 113.47666 * 278.91135 * 4 2 1 7 7 C 1.53508 * 83.57709 * 219.20913 * 6 4 2 8 8 N 1.47479 * 87.93333 * 26.02374 * 7 6 4 9 9 C 1.46894 * 111.00482 * 221.29689 * 8 7 6 10 10 C 1.53002 * 109.47584 * 175.77902 * 9 8 7 11 11 H 1.08998 * 109.46624 * 301.87464 * 10 9 8 12 12 O 1.42895 * 109.47006 * 61.87104 * 10 9 8 13 13 C 1.52999 * 109.47497 * 181.87366 * 10 9 8 14 14 O 1.42895 * 109.47153 * 174.99564 * 13 10 9 15 15 C 1.35678 * 116.99806 * 179.97438 * 14 13 10 16 16 C 1.39311 * 119.81638 * 359.73028 * 15 14 13 17 17 C 1.36444 * 120.18347 * 179.75307 * 16 15 14 18 18 C 1.40834 * 119.80701 * 0.51864 * 17 16 15 19 19 C 1.41220 * 120.17523 * 179.71302 * 18 17 16 20 20 H 1.08004 * 119.99372 * 157.80461 * 19 18 17 21 21 C 1.39885 * 120.00346 * 337.80759 * 19 18 17 22 22 N 1.30886 * 119.99599 * 336.07924 * 21 19 18 23 23 Si 1.86794 * 120.00325 * 156.07690 * 21 19 18 24 24 H 1.48506 * 109.46968 * 94.98619 * 23 21 19 25 25 H 1.48498 * 109.47263 * 214.98588 * 23 21 19 26 26 H 1.48498 * 109.47321 * 334.99012 * 23 21 19 27 27 C 1.40836 * 119.64586 * 359.73444 * 18 17 16 28 28 C 1.36434 * 119.80908 * 0.02562 * 27 18 17 29 29 H 1.09008 * 109.46776 * 300.00295 * 1 2 3 30 30 H 1.09000 * 109.47015 * 59.99532 * 1 2 3 31 31 H 1.08992 * 109.47452 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47062 * 239.99447 * 2 1 3 33 33 H 1.09009 * 109.47209 * 171.59516 * 3 2 1 34 34 H 1.09002 * 109.47179 * 291.59234 * 3 2 1 35 35 H 1.08999 * 109.47202 * 51.59851 * 3 2 1 36 36 H 1.09002 * 114.16829 * 105.56680 * 6 4 2 37 37 H 1.08996 * 114.34348 * 332.87331 * 6 4 2 38 38 H 1.09000 * 113.48081 * 271.26302 * 7 6 4 39 39 H 1.08997 * 113.47645 * 140.78729 * 7 6 4 40 40 H 1.09003 * 109.47452 * 55.77487 * 9 8 7 41 41 H 1.09004 * 109.46990 * 295.77471 * 9 8 7 42 42 H 0.96700 * 114.00199 * 60.00681 * 12 10 9 43 43 H 1.09006 * 109.47076 * 54.99846 * 13 10 9 44 44 H 1.09003 * 109.46649 * 295.00190 * 13 10 9 45 45 H 1.07993 * 119.90923 * 0.02562 * 16 15 14 46 46 H 1.08000 * 120.09596 * 180.25027 * 17 16 15 47 47 H 0.97001 * 119.99796 * 180.02562 * 22 21 19 48 48 H 1.08001 * 120.09482 * 179.97438 * 27 18 17 49 49 H 1.07998 * 119.90574 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.5682 -1.6926 1.3982 6 6 2.0381 0.1588 2.5071 7 6 3.3667 -0.5533 2.7977 8 7 3.5111 -0.7620 1.3449 9 6 4.0205 -2.1088 1.0545 10 6 4.0572 -2.3247 -0.4598 11 1 3.0568 -2.1886 -0.8705 12 8 4.9489 -1.3795 -1.0542 13 6 4.5435 -3.7438 -0.7610 14 8 4.4673 -3.9849 -2.1675 15 6 4.8652 -5.2058 -2.6055 16 6 5.3267 -6.1524 -1.6935 17 6 5.7240 -7.3842 -2.1252 18 6 5.6769 -7.6936 -3.4983 19 6 6.0920 -8.9641 -3.9544 20 1 5.7397 -9.3384 -4.9042 21 6 6.9594 -9.7376 -3.1759 22 7 7.7450 -9.1609 -2.3022 23 14 6.9966 -11.5937 -3.3832 24 1 8.0816 -11.9647 -4.3268 25 1 7.2451 -12.2340 -2.0666 26 1 5.6926 -12.0579 -3.9212 27 6 5.2141 -6.7291 -4.4143 28 6 4.8158 -5.5037 -3.9655 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1197 1.4461 0.1502 34 1 1.8046 1.9111 -0.9556 35 1 1.5593 1.9978 0.8053 36 1 1.2424 -0.0752 3.2144 37 1 2.1377 1.2259 2.3090 38 1 3.2489 -1.4798 3.3597 39 1 4.1278 0.1028 3.2199 40 1 3.3662 -2.8512 1.5115 41 1 5.0267 -2.2121 1.4607 42 1 5.8594 -1.4429 -0.7348 43 1 3.9153 -4.4625 -0.2347 44 1 5.5761 -3.8521 -0.4291 45 1 5.3659 -5.9121 -0.6414 46 1 6.0777 -8.1184 -1.4165 47 1 8.3467 -9.6972 -1.7627 48 1 5.1753 -6.9584 -5.4689 49 1 4.4611 -4.7628 -4.6666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353019034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:31 Heat of formation + Delta-G solvation = -43.224658 kcal Electronic energy + Delta-G solvation = -26708.621594 eV Core-core repulsion = 23022.516033 eV Total energy + Delta-G solvation = -3686.105560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.84696 -38.90669 -37.23566 -35.94769 -34.72758 -33.37091 -31.65830 -29.67700 -29.41075 -28.19125 -27.26337 -25.96153 -25.04918 -24.11049 -21.99185 -21.40521 -20.88626 -20.35648 -19.00361 -17.38327 -17.22030 -16.59125 -16.52771 -15.78656 -15.57270 -15.26499 -14.99551 -14.40398 -14.33212 -13.99325 -13.94210 -13.55128 -13.22115 -12.92377 -12.77509 -12.50139 -12.42065 -12.18729 -12.02660 -11.79898 -11.65857 -11.64520 -11.56959 -11.43624 -11.11591 -11.09643 -11.02169 -10.81369 -10.58686 -10.47749 -10.32103 -9.95315 -9.88779 -9.77864 -9.37127 -9.05846 -8.96536 -7.66074 -7.06587 -6.79100 -4.24100 2.75726 2.95621 3.06267 3.10148 3.21812 3.49373 3.92609 4.01596 4.20577 4.47385 4.51520 4.57108 4.80375 4.83619 4.90437 4.98662 5.00284 5.11546 5.22804 5.25031 5.28223 5.39292 5.45137 5.49649 5.51381 5.57105 5.64072 5.67542 5.76267 5.82800 5.87562 5.94290 6.02856 6.09632 6.18982 6.28221 6.29033 6.32538 6.71033 6.83418 6.89302 7.04869 7.25399 7.40283 7.55003 7.79975 7.89602 7.98669 8.14452 8.43973 8.64034 8.87807 8.98834 10.15377 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.025510 B = 0.002274 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.333238 B =12309.189540 C =12734.819025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.140 4.140 4 C 0.030 3.970 5 H 0.075 0.925 6 C -0.146 4.146 7 C -0.006 4.006 8 N -0.451 5.451 9 C -0.011 4.011 10 C 0.121 3.879 11 H 0.102 0.898 12 O -0.539 6.539 13 C 0.038 3.962 14 O -0.318 6.318 15 C -0.015 4.015 16 C -0.171 4.171 17 C -0.142 4.142 18 C 0.089 3.911 19 C -0.465 4.465 20 H 0.078 0.922 21 C 0.079 3.921 22 N -0.791 5.791 23 Si 0.902 3.098 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.199 4.199 28 C -0.108 4.108 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.071 0.929 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.052 0.948 41 H 0.081 0.919 42 H 0.370 0.630 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.116 0.884 47 H 0.280 0.720 48 H 0.100 0.900 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.125 15.029 11.434 20.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.099 4.099 3 C -0.197 4.197 4 C -0.079 4.079 5 H 0.093 0.907 6 C -0.184 4.184 7 C -0.135 4.135 8 N -0.173 5.173 9 C -0.140 4.140 10 C 0.061 3.939 11 H 0.120 0.880 12 O -0.342 6.342 13 C -0.039 4.039 14 O -0.233 6.233 15 C -0.058 4.058 16 C -0.190 4.190 17 C -0.161 4.161 18 C 0.087 3.913 19 C -0.494 4.494 20 H 0.096 0.904 21 C -0.139 4.139 22 N -0.417 5.417 23 Si 0.726 3.274 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.219 4.219 28 C -0.127 4.127 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.070 0.930 41 H 0.100 0.900 42 H 0.216 0.784 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.091 0.909 48 H 0.118 0.882 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.091 15.724 10.750 21.106 hybrid contribution 0.375 -2.105 1.060 2.386 sum -8.716 13.619 11.810 20.023 Atomic orbital electron populations 1.21816 0.95307 1.01598 1.01699 1.20937 0.94768 0.96950 0.97267 1.21807 1.02415 0.94895 1.00557 1.23551 0.89828 0.98611 0.95906 0.90703 1.23329 0.97094 1.00925 0.97041 1.23721 0.98369 1.00221 0.91140 1.68932 1.11580 1.24791 1.11971 1.23304 1.01876 0.91432 0.97382 1.21760 0.95277 0.86416 0.90461 0.87996 1.86624 1.22121 1.57617 1.67885 1.23133 1.00539 0.96535 0.83714 1.85863 1.83408 1.32553 1.21516 1.18572 1.08905 0.84864 0.93430 1.20561 1.05807 0.95885 0.96731 1.20840 1.03485 0.95604 0.96198 1.17574 0.90216 0.92342 0.91160 1.19454 1.24457 1.00350 1.05164 0.90367 1.25891 0.93273 1.00947 0.93816 1.69891 1.15157 1.37875 1.18736 0.86405 0.79751 0.82612 0.78608 1.19584 1.20079 1.18365 1.20567 1.09974 0.93370 0.97981 1.19617 1.04216 0.97177 0.91713 0.92822 0.92476 0.92898 0.90601 0.91097 0.93374 0.93267 0.91015 0.88161 0.91606 0.89703 0.93007 0.90018 0.78363 0.92746 0.92882 0.89030 0.86584 0.90934 0.88205 0.88497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.17 37.16 0.34 -0.85 16 2 C -0.08 -0.77 3.11 -90.62 -0.28 -1.05 16 3 C -0.14 -1.29 8.11 37.15 0.30 -0.99 16 4 C 0.03 0.28 2.44 -71.43 -0.17 0.10 16 5 H 0.08 0.69 7.61 -51.93 -0.40 0.29 16 6 C -0.15 -1.08 7.65 -26.20 -0.20 -1.28 16 7 C -0.01 -0.05 7.71 -7.55 -0.06 -0.10 16 8 N -0.45 -4.52 5.39 -236.50 -1.28 -5.80 16 9 C -0.01 -0.11 4.40 -3.83 -0.02 -0.13 16 10 C 0.12 1.61 3.37 -26.73 -0.09 1.52 16 11 H 0.10 1.46 6.48 -51.93 -0.34 1.12 16 12 O -0.54 -7.82 13.20 -40.08 -0.53 -8.35 16 13 C 0.04 0.61 4.36 37.16 0.16 0.77 16 14 O -0.32 -6.67 10.09 -23.59 -0.24 -6.91 16 15 C -0.01 -0.34 6.71 -38.78 -0.26 -0.60 16 16 C -0.17 -4.05 8.96 -39.83 -0.36 -4.41 16 17 C -0.14 -3.71 8.68 -39.25 -0.34 -4.05 16 18 C 0.09 2.41 5.58 -106.80 -0.60 1.81 16 19 C -0.46 -12.39 9.01 -37.83 -0.34 -12.73 16 20 H 0.08 2.00 7.95 -52.48 -0.42 1.58 16 21 C 0.08 1.98 5.01 -17.34 -0.09 1.89 16 22 N -0.79 -20.46 11.19 55.54 0.62 -19.83 16 23 Si 0.90 18.57 29.62 -169.99 -5.04 13.53 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 27 C -0.20 -4.99 9.74 -39.25 -0.38 -5.38 16 28 C -0.11 -2.59 9.92 -39.83 -0.40 -2.98 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.90 6.81 -51.93 -0.35 0.54 16 33 H 0.07 0.76 7.55 -51.92 -0.39 0.37 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.39 6.63 -51.93 -0.34 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.74 5.76 -51.93 -0.30 0.44 16 38 H 0.07 0.49 7.86 -51.93 -0.41 0.08 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.51 7.55 -51.93 -0.39 0.12 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.37 4.27 9.05 45.56 0.41 4.68 16 43 H 0.05 0.84 7.66 -51.93 -0.40 0.44 16 44 H 0.05 0.83 7.63 -51.93 -0.40 0.43 16 45 H 0.09 1.92 6.27 -52.49 -0.33 1.59 16 46 H 0.12 3.09 6.22 -52.49 -0.33 2.77 16 47 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 48 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 49 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 387.19 15.07 5.83 5.83 Total: -1.00 -29.46 387.19 -10.71 -40.17 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.32 Total: 9.79 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -2.78 Total: -28.45 kcal Atomic # 7 Polarization: -24.98 SS G_CDS: -0.65 Total: -25.63 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.77 Total: -15.25 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.04 Total: 13.53 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.46 -10.71 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353019034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.050 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds