Wall clock time and date at job start Tue Mar 31 2020 12:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 O 1.42899 * 109.46996 * 60.74897 * 3 2 1 5 5 C 1.52999 * 109.47251 * 180.74783 * 3 2 1 6 6 C 1.53001 * 109.47134 * 298.15250 * 5 3 2 7 7 C 1.52997 * 109.46779 * 300.75045 * 3 2 1 8 8 N 1.46499 * 109.46968 * 184.99653 * 7 3 2 9 9 C 1.34777 * 119.99787 * 179.97438 * 8 7 3 10 10 O 1.21277 * 120.00286 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.99752 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46933 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47498 * 54.02121 * 12 11 9 14 14 C 1.50707 * 109.47249 * 294.01644 * 12 11 9 15 15 H 1.07998 * 119.99613 * 333.58894 * 14 12 11 16 16 C 1.37874 * 119.99997 * 153.58132 * 14 12 11 17 17 N 1.31518 * 119.99895 * 5.45729 * 16 14 12 18 18 Si 1.86797 * 120.00154 * 185.45479 * 16 14 12 19 19 H 1.48500 * 109.47074 * 270.00589 * 18 16 14 20 20 H 1.48508 * 109.46921 * 30.00494 * 18 16 14 21 21 H 1.48500 * 109.47045 * 149.99918 * 18 16 14 22 22 C 1.50707 * 109.47170 * 174.01793 * 12 11 9 23 23 C 1.38232 * 119.99604 * 57.48567 * 22 12 11 24 24 C 1.38241 * 120.00004 * 179.81289 * 23 22 12 25 25 C 1.38232 * 119.99634 * 0.39161 * 24 23 22 26 26 C 1.38242 * 119.99986 * 359.86364 * 25 24 23 27 27 C 1.38231 * 120.00108 * 359.94931 * 26 25 24 28 28 H 1.09002 * 109.46925 * 184.62946 * 1 2 3 29 29 H 1.09006 * 109.47188 * 304.62428 * 1 2 3 30 30 H 1.08995 * 109.47433 * 64.62799 * 1 2 3 31 31 H 1.08991 * 109.47171 * 239.99608 * 2 1 3 32 32 H 1.09009 * 109.47089 * 119.99805 * 2 1 3 33 33 H 0.96706 * 114.00262 * 300.00185 * 4 3 2 34 34 H 1.09005 * 109.46550 * 58.15144 * 5 3 2 35 35 H 1.08998 * 109.46972 * 178.14952 * 5 3 2 36 36 H 1.09001 * 109.46467 * 186.28789 * 6 5 3 37 37 H 1.08998 * 109.47113 * 306.29047 * 6 5 3 38 38 H 1.08999 * 109.46983 * 66.29421 * 6 5 3 39 39 H 1.08998 * 109.47027 * 64.99987 * 7 3 2 40 40 H 1.09003 * 109.47276 * 304.99642 * 7 3 2 41 41 H 0.96998 * 120.00500 * 0.02562 * 8 7 3 42 42 H 1.08998 * 109.47243 * 60.00631 * 11 9 8 43 43 H 1.09003 * 109.46879 * 300.00397 * 11 9 8 44 44 H 0.96994 * 120.00017 * 354.70790 * 17 16 14 45 45 H 1.08002 * 120.00139 * 0.02562 * 23 22 12 46 46 H 1.07995 * 120.00263 * 180.23159 * 24 23 22 47 47 H 1.08005 * 119.99957 * 179.83349 * 25 24 23 48 48 H 1.08000 * 119.99658 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.99814 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5781 2.1110 1.1755 5 6 3.5699 1.4426 -0.0188 6 6 4.0955 0.7564 1.2437 7 6 1.5147 2.1691 -1.2397 8 7 2.0980 3.5115 -1.3027 9 6 1.7772 4.3386 -2.3174 10 8 1.0054 3.9718 -3.1779 11 6 2.3778 5.7193 -2.3826 12 6 1.8523 6.4460 -3.6222 13 1 0.7624 6.4311 -3.6174 14 6 2.3587 5.7548 -4.8620 15 1 3.2812 5.1942 -4.8290 16 6 1.6442 5.8382 -6.0382 17 7 0.5794 6.6070 -6.1078 18 14 2.1885 4.8591 -7.5331 19 1 3.1339 5.6719 -8.3397 20 1 2.8616 3.6118 -7.0896 21 1 1.0026 4.5150 -8.3580 22 6 2.3352 7.8735 -3.6101 23 6 3.6899 8.1444 -3.5611 24 6 4.1331 9.4538 -3.5539 25 6 3.2213 10.4922 -3.5876 26 6 1.8664 10.2213 -3.6313 27 6 1.4234 8.9119 -3.6424 28 1 -0.3633 -1.0243 0.0829 29 1 -0.3634 0.5839 0.8457 30 1 -0.3634 0.4403 -0.9285 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.6150 2.1489 1.2537 34 1 3.9224 0.9040 -0.8986 35 1 3.9328 2.4698 -0.0520 36 1 5.1803 0.8545 1.2856 37 1 3.6539 1.2257 2.1228 38 1 3.8268 -0.2997 1.2219 39 1 0.4290 2.2471 -1.1823 40 1 1.7920 1.6101 -2.1334 41 1 2.7156 3.8048 -0.6147 42 1 3.4634 5.6410 -2.4399 43 1 2.1005 6.2786 -1.4890 44 1 0.2520 7.0551 -5.3123 45 1 4.4021 7.3331 -3.5318 46 1 5.1915 9.6655 -3.5194 47 1 3.5674 11.5153 -3.5793 48 1 1.1540 11.0326 -3.6572 49 1 0.3649 8.7003 -3.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356196889.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:21 Heat of formation + Delta-G solvation = -87.480974 kcal Electronic energy + Delta-G solvation = -27429.054023 eV Core-core repulsion = 23741.029365 eV Total energy + Delta-G solvation = -3688.024658 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.81095 -38.74906 -38.01101 -34.43261 -33.90784 -33.25382 -32.12370 -31.32850 -30.08411 -29.24247 -27.72604 -25.24976 -24.08065 -23.06145 -22.74196 -21.66194 -20.24578 -20.10500 -19.40022 -17.34610 -16.81385 -16.35421 -15.83332 -15.46638 -15.39901 -14.80478 -14.40789 -14.17001 -14.12841 -13.96603 -13.77628 -13.64393 -13.33858 -12.91595 -12.72021 -12.53378 -12.40770 -12.28857 -12.11614 -11.94373 -11.81041 -11.76820 -11.42010 -11.32005 -10.96068 -10.87665 -10.69846 -10.52924 -10.41971 -10.16422 -10.05228 -10.00614 -9.62998 -9.01509 -8.66596 -8.56108 -8.25272 -8.11455 -7.59661 -6.21715 -3.89402 2.21567 2.27854 3.48230 3.50930 3.56409 3.61621 3.69806 4.09723 4.48069 4.53727 4.61788 4.63096 4.69336 4.93932 5.13398 5.18266 5.29032 5.43264 5.48838 5.49868 5.61663 5.63164 5.64616 5.68617 5.76730 5.78410 5.80900 5.87710 5.89945 5.99266 6.02513 6.07543 6.10408 6.19363 6.20490 6.33094 6.44778 6.69122 6.82212 6.89402 6.95091 7.22289 7.24773 7.40835 7.45898 7.74872 7.88097 8.06573 8.23408 8.52586 8.98345 9.04418 9.79110 11.18301 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003618 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.030343 B = 7737.592334 C = 8947.116612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.147 4.147 3 C 0.124 3.876 4 O -0.554 6.554 5 C -0.110 4.110 6 C -0.149 4.149 7 C 0.097 3.903 8 N -0.743 5.743 9 C 0.512 3.488 10 O -0.503 6.503 11 C -0.117 4.117 12 C 0.073 3.927 13 H 0.048 0.952 14 C -0.564 4.564 15 H 0.045 0.955 16 C 0.030 3.970 17 N -0.907 5.907 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.291 1.291 21 H -0.285 1.285 22 C -0.029 4.029 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.154 4.154 26 C -0.123 4.123 27 C -0.127 4.127 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.375 0.625 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.395 0.605 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.270 0.730 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.283 -7.929 15.007 17.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.186 4.186 3 C 0.083 3.917 4 O -0.361 6.361 5 C -0.148 4.148 6 C -0.206 4.206 7 C -0.027 4.027 8 N -0.399 5.399 9 C 0.299 3.701 10 O -0.375 6.375 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.066 0.934 14 C -0.601 4.601 15 H 0.063 0.937 16 C -0.175 4.175 17 N -0.543 5.543 18 Si 0.896 3.104 19 H -0.218 1.218 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.029 4.029 23 C -0.132 4.132 24 C -0.147 4.147 25 C -0.172 4.172 26 C -0.142 4.142 27 C -0.145 4.145 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.223 0.777 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.230 0.770 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.987 -8.414 12.832 15.854 hybrid contribution 0.088 0.344 1.621 1.659 sum 4.075 -8.070 14.453 17.047 Atomic orbital electron populations 1.21880 0.95519 1.02268 1.02256 1.22182 0.96573 0.96493 1.03308 1.21473 0.94944 0.90848 0.84395 1.86518 1.27037 1.79607 1.42944 1.21507 0.92070 1.02075 0.99156 1.21733 1.00388 1.00223 0.98239 1.21909 0.98366 0.84585 0.97878 1.46130 1.50309 1.14799 1.28691 1.20874 0.81739 0.87203 0.80289 1.90736 1.33842 1.75959 1.36955 1.21674 1.01091 0.92351 1.00620 1.17862 0.97410 0.86740 0.92623 0.93350 1.21557 1.09662 1.33470 0.95433 0.93655 1.25584 0.94741 0.96048 1.01169 1.70724 1.23969 1.27480 1.32131 0.83592 0.75664 0.75734 0.75440 1.21813 1.21700 1.21118 1.20792 0.92903 0.97513 0.91738 1.20886 0.95816 0.95517 1.00960 1.20988 0.98449 0.93339 1.01902 1.20814 0.93508 0.98039 1.04882 1.20973 0.95384 0.96416 1.01381 1.21046 0.99392 0.92353 1.01688 0.92234 0.92612 0.91868 0.90765 0.90586 0.77670 0.90524 0.91068 0.92948 0.91682 0.92900 0.91624 0.91198 0.76990 0.90304 0.91652 0.91800 0.86927 0.87486 0.87607 0.87463 0.87109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.22 37.16 0.34 -0.94 16 2 C -0.15 -1.23 4.88 -26.73 -0.13 -1.36 16 3 C 0.12 1.23 0.50 -90.62 -0.05 1.18 16 4 O -0.55 -5.50 12.03 -35.23 -0.42 -5.93 16 5 C -0.11 -1.07 5.00 -26.73 -0.13 -1.20 16 6 C -0.15 -1.27 9.35 37.16 0.35 -0.92 16 7 C 0.10 1.28 4.29 -4.04 -0.02 1.27 16 8 N -0.74 -11.15 5.18 -60.29 -0.31 -11.46 16 9 C 0.51 10.28 7.58 -10.98 -0.08 10.20 16 10 O -0.50 -12.59 15.02 5.56 0.08 -12.51 16 11 C -0.12 -2.30 4.84 -27.88 -0.14 -2.44 16 12 C 0.07 1.76 1.27 -92.92 -0.12 1.64 16 13 H 0.05 1.32 6.37 -51.93 -0.33 0.99 16 14 C -0.56 -15.48 6.64 -34.44 -0.23 -15.71 16 15 H 0.05 1.25 7.82 -52.49 -0.41 0.84 16 16 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 17 N -0.91 -27.78 13.63 55.43 0.76 -27.02 16 18 Si 1.07 26.55 29.91 -169.99 -5.08 21.46 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.03 -0.65 4.71 -104.62 -0.49 -1.14 16 23 C -0.11 -2.33 8.91 -39.58 -0.35 -2.68 16 24 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 25 C -0.15 -2.73 10.05 -39.58 -0.40 -3.13 16 26 C -0.12 -2.33 10.05 -39.58 -0.40 -2.72 16 27 C -0.13 -2.72 9.15 -39.59 -0.36 -3.08 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 6.57 -51.93 -0.34 0.04 16 30 H 0.06 0.57 6.79 -51.93 -0.35 0.22 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.59 6.66 -51.92 -0.35 0.25 16 33 H 0.37 2.93 7.26 45.56 0.33 3.26 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.73 6.52 -51.93 -0.34 0.39 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 38 H 0.05 0.41 6.83 -51.93 -0.35 0.05 16 39 H 0.07 0.90 6.80 -51.93 -0.35 0.55 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.40 5.07 6.98 -40.82 -0.28 4.78 16 42 H 0.08 1.45 7.47 -51.93 -0.39 1.06 16 43 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.27 8.16 5.93 -40.82 -0.24 7.92 16 45 H 0.11 2.21 7.51 -52.49 -0.39 1.82 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 47 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 48 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 49 H 0.11 2.39 7.73 -52.49 -0.41 1.98 16 LS Contribution 386.74 15.07 5.83 5.83 Total: -1.00 -33.66 386.74 -9.05 -42.71 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.20 Total: 9.92 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: -2.70 Total: -23.00 kcal Atomic # 7 Polarization: -38.93 SS G_CDS: 0.44 Total: -38.48 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.34 Total: -18.44 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -5.08 Total: 21.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.66 -9.05 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356196889.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.771 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds