Wall clock time and date at job start Tue Mar 31 2020 12:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47277 * 2 1 4 4 O 1.42899 * 109.46996 * 60.74897 * 3 2 1 5 5 C 1.52999 * 109.47251 * 180.74783 * 3 2 1 6 6 C 1.53001 * 109.47134 * 298.15250 * 5 3 2 7 7 C 1.52997 * 109.46779 * 300.75045 * 3 2 1 8 8 N 1.46499 * 109.46968 * 184.99653 * 7 3 2 9 9 C 1.34777 * 119.99787 * 179.97438 * 8 7 3 10 10 O 1.21277 * 120.00286 * 0.02562 * 9 8 7 11 11 C 1.50707 * 119.99752 * 180.02562 * 9 8 7 12 12 C 1.52997 * 109.46933 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.47498 * 54.02121 * 12 11 9 14 14 C 1.50707 * 109.47249 * 294.01644 * 12 11 9 15 15 H 1.07998 * 119.99613 * 333.58894 * 14 12 11 16 16 C 1.37874 * 119.99997 * 153.58132 * 14 12 11 17 17 N 1.31518 * 119.99895 * 5.45729 * 16 14 12 18 18 Si 1.86797 * 120.00154 * 185.45479 * 16 14 12 19 19 H 1.48500 * 109.47074 * 270.00589 * 18 16 14 20 20 H 1.48508 * 109.46921 * 30.00494 * 18 16 14 21 21 H 1.48500 * 109.47045 * 149.99918 * 18 16 14 22 22 C 1.50707 * 109.47170 * 174.01793 * 12 11 9 23 23 C 1.38232 * 119.99604 * 57.48567 * 22 12 11 24 24 C 1.38241 * 120.00004 * 179.81289 * 23 22 12 25 25 C 1.38232 * 119.99634 * 0.39161 * 24 23 22 26 26 C 1.38242 * 119.99986 * 359.86364 * 25 24 23 27 27 C 1.38231 * 120.00108 * 359.94931 * 26 25 24 28 28 H 1.09002 * 109.46925 * 184.62946 * 1 2 3 29 29 H 1.09006 * 109.47188 * 304.62428 * 1 2 3 30 30 H 1.08995 * 109.47433 * 64.62799 * 1 2 3 31 31 H 1.08991 * 109.47171 * 239.99608 * 2 1 3 32 32 H 1.09009 * 109.47089 * 119.99805 * 2 1 3 33 33 H 0.96706 * 114.00262 * 300.00185 * 4 3 2 34 34 H 1.09005 * 109.46550 * 58.15144 * 5 3 2 35 35 H 1.08998 * 109.46972 * 178.14952 * 5 3 2 36 36 H 1.09001 * 109.46467 * 186.28789 * 6 5 3 37 37 H 1.08998 * 109.47113 * 306.29047 * 6 5 3 38 38 H 1.08999 * 109.46983 * 66.29421 * 6 5 3 39 39 H 1.08998 * 109.47027 * 64.99987 * 7 3 2 40 40 H 1.09003 * 109.47276 * 304.99642 * 7 3 2 41 41 H 0.96998 * 120.00500 * 0.02562 * 8 7 3 42 42 H 1.08998 * 109.47243 * 60.00631 * 11 9 8 43 43 H 1.09003 * 109.46879 * 300.00397 * 11 9 8 44 44 H 0.96994 * 120.00017 * 354.70790 * 17 16 14 45 45 H 1.08002 * 120.00139 * 0.02562 * 23 22 12 46 46 H 1.07995 * 120.00263 * 180.23159 * 24 23 22 47 47 H 1.08005 * 119.99957 * 179.83349 * 25 24 23 48 48 H 1.08000 * 119.99658 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.99814 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5781 2.1110 1.1755 5 6 3.5699 1.4426 -0.0188 6 6 4.0955 0.7564 1.2437 7 6 1.5147 2.1691 -1.2397 8 7 2.0980 3.5115 -1.3027 9 6 1.7772 4.3386 -2.3174 10 8 1.0054 3.9718 -3.1779 11 6 2.3778 5.7193 -2.3826 12 6 1.8523 6.4460 -3.6222 13 1 0.7624 6.4311 -3.6174 14 6 2.3587 5.7548 -4.8620 15 1 3.2812 5.1942 -4.8290 16 6 1.6442 5.8382 -6.0382 17 7 0.5794 6.6070 -6.1078 18 14 2.1885 4.8591 -7.5331 19 1 3.1339 5.6719 -8.3397 20 1 2.8616 3.6118 -7.0896 21 1 1.0026 4.5150 -8.3580 22 6 2.3352 7.8735 -3.6101 23 6 3.6899 8.1444 -3.5611 24 6 4.1331 9.4538 -3.5539 25 6 3.2213 10.4922 -3.5876 26 6 1.8664 10.2213 -3.6313 27 6 1.4234 8.9119 -3.6424 28 1 -0.3633 -1.0243 0.0829 29 1 -0.3634 0.5839 0.8457 30 1 -0.3634 0.4403 -0.9285 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 0.6150 2.1489 1.2537 34 1 3.9224 0.9040 -0.8986 35 1 3.9328 2.4698 -0.0520 36 1 5.1803 0.8545 1.2856 37 1 3.6539 1.2257 2.1228 38 1 3.8268 -0.2997 1.2219 39 1 0.4290 2.2471 -1.1823 40 1 1.7920 1.6101 -2.1334 41 1 2.7156 3.8048 -0.6147 42 1 3.4634 5.6410 -2.4399 43 1 2.1005 6.2786 -1.4890 44 1 0.2520 7.0551 -5.3123 45 1 4.4021 7.3331 -3.5318 46 1 5.1915 9.6655 -3.5194 47 1 3.5674 11.5153 -3.5793 48 1 1.1540 11.0326 -3.6572 49 1 0.3649 8.7003 -3.6770 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356196889.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:20 Heat of formation + Delta-G solvation = -109.418361 kcal Electronic energy + Delta-G solvation = -27430.005300 eV Core-core repulsion = 23741.029365 eV Total energy + Delta-G solvation = -3688.975935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.06854 -40.14466 -39.42401 -36.18126 -35.21868 -34.23601 -33.28577 -32.82274 -31.61213 -30.71977 -28.91588 -26.90761 -25.38728 -24.37054 -23.79570 -23.20769 -21.82961 -21.14251 -20.82170 -18.90305 -18.24246 -17.89735 -17.21598 -16.69427 -16.50109 -16.14965 -15.74571 -15.67049 -15.55663 -15.34154 -14.86121 -14.77635 -14.64916 -14.32485 -14.12099 -14.05375 -13.91359 -13.42832 -13.28649 -13.14537 -12.95687 -12.73073 -12.65430 -12.60320 -12.52748 -12.08694 -12.01451 -11.98816 -11.73519 -11.65752 -11.47237 -11.34305 -10.97263 -10.72724 -10.61047 -10.33305 -9.98238 -9.64468 -9.27049 -8.45062 -6.11635 0.67543 0.74134 1.46461 1.58306 1.71869 1.87516 2.30978 2.60070 3.10345 3.28134 3.37964 3.60561 3.72523 3.82744 4.07921 4.10968 4.25656 4.27752 4.29677 4.38201 4.42783 4.46372 4.48537 4.56409 4.59432 4.63383 4.70748 4.78730 4.81969 4.86623 5.00645 5.04483 5.08250 5.13453 5.17167 5.22870 5.24250 5.36523 5.40113 5.41900 5.50264 5.58133 5.74216 5.81917 5.95210 6.21451 6.30072 6.39460 6.67113 6.75341 6.78001 7.49920 7.63604 8.94791 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.012414 B = 0.003618 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.030343 B = 7737.592334 C = 8947.116612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C 0.137 3.863 4 O -0.559 6.559 5 C -0.115 4.115 6 C -0.143 4.143 7 C 0.095 3.905 8 N -0.720 5.720 9 C 0.510 3.490 10 O -0.563 6.563 11 C -0.112 4.112 12 C 0.075 3.925 13 H 0.004 0.996 14 C -0.555 4.555 15 H 0.038 0.962 16 C -0.027 4.027 17 N -0.942 5.942 18 Si 1.102 2.898 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.291 1.291 22 C -0.053 4.053 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.145 4.145 26 C -0.126 4.126 27 C -0.151 4.151 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.384 0.616 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.410 0.590 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.259 0.741 45 H 0.117 0.883 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.133 0.867 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.753 -7.506 16.638 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.181 4.181 3 C 0.096 3.904 4 O -0.367 6.367 5 C -0.153 4.153 6 C -0.200 4.200 7 C -0.029 4.029 8 N -0.375 5.375 9 C 0.298 3.702 10 O -0.440 6.440 11 C -0.152 4.152 12 C 0.055 3.945 13 H 0.022 0.978 14 C -0.593 4.593 15 H 0.057 0.943 16 C -0.225 4.225 17 N -0.581 5.581 18 Si 0.927 3.073 19 H -0.199 1.199 20 H -0.205 1.205 21 H -0.217 1.217 22 C -0.054 4.054 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.163 4.163 26 C -0.144 4.144 27 C -0.170 4.170 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.247 0.753 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.135 0.865 46 H 0.162 0.838 47 H 0.165 0.835 48 H 0.151 0.849 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.498 -7.998 14.532 17.815 hybrid contribution -0.660 0.260 1.251 1.438 sum 5.838 -7.738 15.783 18.522 Atomic orbital electron populations 1.21886 0.95268 1.03029 1.01795 1.22156 0.96778 0.95181 1.03969 1.21357 0.95163 0.91251 0.82658 1.86506 1.28085 1.79681 1.42433 1.21561 0.91688 1.01936 1.00076 1.21682 1.00759 1.00566 0.96973 1.22084 0.98095 0.83477 0.99288 1.45892 1.49390 1.14894 1.27334 1.20986 0.80996 0.87780 0.80474 1.90716 1.36618 1.77078 1.39561 1.21578 1.01780 0.92152 0.99672 1.17683 0.94727 0.88691 0.93349 0.97817 1.21807 1.08642 1.32462 0.96404 0.94344 1.26760 0.94782 0.96685 1.04298 1.70810 1.25685 1.29801 1.31779 0.83122 0.75583 0.75326 0.73258 1.19894 1.20543 1.21671 1.20591 0.94251 0.96291 0.94237 1.21013 0.94715 0.97185 1.01562 1.21409 1.00594 0.92171 0.99888 1.21305 0.92606 1.00020 1.02387 1.21296 0.97022 0.95688 1.00359 1.21082 0.98547 0.93932 1.03420 0.91158 0.91526 0.93640 0.90740 0.89201 0.76568 0.90390 0.91761 0.92215 0.92338 0.91859 0.92309 0.92660 0.75294 0.88562 0.89196 0.93012 0.86536 0.83755 0.83528 0.84892 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.22 71.98 0.66 -1.73 16 2 C -0.14 -2.16 4.88 30.59 0.15 -2.01 16 3 C 0.14 2.54 0.50 -10.79 -0.01 2.54 16 4 O -0.56 -10.15 12.03 -148.98 -1.79 -11.94 16 5 C -0.11 -2.05 5.00 30.59 0.15 -1.89 16 6 C -0.14 -2.11 9.35 71.98 0.67 -1.43 16 7 C 0.09 2.52 4.29 86.38 0.37 2.89 16 8 N -0.72 -21.57 5.18 -463.06 -2.40 -23.97 16 9 C 0.51 21.05 7.58 87.66 0.66 21.72 16 10 O -0.56 -29.69 15.02 -3.02 -0.05 -29.73 16 11 C -0.11 -4.46 4.84 29.85 0.14 -4.31 16 12 C 0.07 3.76 1.27 -12.28 -0.02 3.75 16 13 H 0.00 0.21 6.37 -2.39 -0.02 0.20 16 14 C -0.56 -31.48 6.64 25.60 0.17 -31.31 16 15 H 0.04 2.17 7.82 -2.91 -0.02 2.15 16 16 C -0.03 -1.62 5.45 84.65 0.46 -1.16 16 17 N -0.94 -60.54 13.63 21.45 0.29 -60.24 16 18 Si 1.10 54.71 29.91 68.60 2.05 56.76 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 22 C -0.05 -2.42 4.71 -19.87 -0.09 -2.52 16 23 C -0.13 -5.02 8.91 22.27 0.20 -4.82 16 24 C -0.12 -4.04 10.05 22.27 0.22 -3.81 16 25 C -0.15 -4.59 10.05 22.27 0.22 -4.37 16 26 C -0.13 -4.53 10.05 22.27 0.22 -4.31 16 27 C -0.15 -6.67 9.15 22.27 0.20 -6.47 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.82 6.57 -2.38 -0.02 0.81 16 30 H 0.04 0.83 6.79 -2.39 -0.02 0.82 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.17 6.66 -2.38 -0.02 1.15 16 33 H 0.38 5.40 7.26 -74.05 -0.54 4.86 16 34 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.06 1.22 6.52 -2.39 -0.02 1.20 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.95 7.44 -2.39 -0.02 0.94 16 38 H 0.06 0.80 6.83 -2.39 -0.02 0.79 16 39 H 0.06 1.66 6.80 -2.39 -0.02 1.65 16 40 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.41 10.05 6.98 -92.71 -0.65 9.40 16 42 H 0.10 3.48 7.47 -2.39 -0.02 3.46 16 43 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.26 16.73 5.93 -92.71 -0.55 16.18 16 45 H 0.12 4.42 7.51 -2.91 -0.02 4.39 16 46 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 47 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 48 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 49 H 0.09 4.24 7.73 -2.91 -0.02 4.21 16 Total: -1.00 -77.02 386.74 2.50 -74.51 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: -0.01 Total: 33.88 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 4.41 Total: -39.26 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.11 Total: -84.22 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -1.84 Total: -41.67 kcal Atomic # 14 Polarization: 54.71 SS G_CDS: 2.05 Total: 56.76 kcal Total: -77.02 2.50 -74.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356196889.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.906 kcal (2) G-P(sol) polarization free energy of solvation -77.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds