Wall clock time and date at job start Tue Mar 31 2020 13:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.52995 * 109.47251 * 120.00428 * 2 1 3 5 5 H 1.09010 * 109.47079 * 300.00104 * 4 2 1 6 6 O 1.42892 * 109.47282 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47382 * 59.99701 * 4 2 1 8 8 C 1.52994 * 109.47419 * 185.00046 * 7 4 2 9 9 N 1.46498 * 109.47472 * 179.97438 * 8 7 4 10 10 C 1.34769 * 120.00329 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00094 * 180.02562 * 10 9 8 13 13 C 1.53007 * 109.47204 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47243 * 54.99792 * 13 12 10 15 15 C 1.50694 * 109.46650 * 294.99929 * 13 12 10 16 16 H 1.08004 * 120.00640 * 325.84925 * 15 13 12 17 17 C 1.37885 * 119.99700 * 145.84799 * 15 13 12 18 18 N 1.31512 * 119.99732 * 6.12161 * 17 15 13 19 19 Si 1.86797 * 119.99958 * 186.11756 * 17 15 13 20 20 H 1.48501 * 109.47353 * 60.00078 * 19 17 15 21 21 H 1.48505 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47324 * 300.00118 * 19 17 15 23 23 C 1.50698 * 109.46792 * 175.00068 * 13 12 10 24 24 C 1.38238 * 120.00008 * 63.46610 * 23 13 12 25 25 C 1.38235 * 119.99426 * 179.78030 * 24 23 13 26 26 C 1.38233 * 120.00356 * 0.44448 * 25 24 23 27 27 C 1.38231 * 120.00130 * 359.80714 * 26 25 24 28 28 C 1.38234 * 120.00128 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46656 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47201 * 59.99636 * 1 2 3 32 32 H 1.08997 * 109.46813 * 240.00492 * 2 1 3 33 33 H 1.08993 * 109.47294 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47697 * 300.00612 * 3 2 1 35 35 H 1.09010 * 109.46685 * 60.00187 * 3 2 1 36 36 H 0.96704 * 114.00413 * 300.00145 * 6 4 2 37 37 H 1.09009 * 109.46886 * 305.00396 * 7 4 2 38 38 H 1.08998 * 109.46678 * 64.99658 * 7 4 2 39 39 H 1.08999 * 109.46948 * 300.00342 * 8 7 4 40 40 H 1.09011 * 109.46923 * 60.00146 * 8 7 4 41 41 H 0.97003 * 119.99812 * 0.02562 * 9 8 7 42 42 H 1.08999 * 109.47436 * 300.00260 * 12 10 9 43 43 H 1.08998 * 109.47214 * 60.00170 * 12 10 9 44 44 H 0.97007 * 119.99596 * 180.02562 * 18 17 15 45 45 H 1.07990 * 120.00301 * 359.97438 * 24 23 13 46 46 H 1.08003 * 119.99936 * 180.27049 * 25 24 23 47 47 H 1.08005 * 120.00024 * 179.83044 * 26 25 24 48 48 H 1.08000 * 120.00468 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 8 3.4690 -0.7218 1.2488 7 6 1.5300 -2.1638 1.2491 8 6 1.9348 -2.8479 2.5564 9 7 1.4459 -4.2289 2.5567 10 6 1.6867 -5.0288 3.6142 11 8 2.3078 -4.6053 4.5660 12 6 1.1843 -6.4496 3.6142 13 6 1.5890 -7.1337 4.9216 14 1 1.2294 -6.5456 5.7659 15 6 3.0906 -7.2419 4.9879 16 1 3.6611 -7.4008 4.0848 17 6 3.7363 -7.1378 6.2018 18 7 3.0380 -7.0651 7.3139 19 14 5.6028 -7.1001 6.2667 20 1 6.1015 -5.9341 5.4940 21 1 6.0468 -6.9850 7.6791 22 1 6.1439 -8.3517 5.6787 23 6 0.9832 -8.5125 4.9754 24 6 1.3493 -9.4653 4.0431 25 6 0.7969 -10.7314 4.0953 26 6 -0.1284 -11.0420 5.0742 27 6 -0.4983 -10.0877 6.0034 28 6 0.0574 -8.8230 5.9540 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.8620 -1.1637 0.4837 37 1 0.4436 -2.1651 1.1596 38 1 1.9646 -2.7027 0.4073 39 1 3.0211 -2.8466 2.6459 40 1 1.5002 -2.3089 3.3983 41 1 0.9496 -4.5678 1.7953 42 1 0.0980 -6.4509 3.5250 43 1 1.6186 -6.9886 2.7722 44 1 3.4923 -6.9915 8.1678 45 1 2.0691 -9.2214 3.2759 46 1 1.0861 -11.4771 3.3696 47 1 -0.5620 -12.0304 5.1133 48 1 -1.2215 -10.3302 6.7679 49 1 -0.2320 -8.0773 6.6796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356204722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:00 Heat of formation + Delta-G solvation = -90.093049 kcal Electronic energy + Delta-G solvation = -26577.036316 eV Core-core repulsion = 22888.898389 eV Total energy + Delta-G solvation = -3688.137926 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.25524 -38.64871 -38.04792 -34.69435 -34.43446 -33.78456 -31.49183 -30.79558 -29.97752 -28.72456 -27.35715 -26.02080 -24.82351 -22.76736 -21.83215 -21.55476 -20.81028 -20.04704 -19.15097 -16.85943 -16.53719 -16.29176 -15.83347 -15.72617 -15.49493 -14.96378 -14.52279 -14.30223 -14.21891 -14.05063 -13.78424 -13.41131 -13.10963 -12.84839 -12.53841 -12.52129 -12.29008 -12.22885 -11.97144 -11.85937 -11.71145 -11.58956 -11.55148 -11.23960 -11.08820 -10.79656 -10.73420 -10.63716 -10.54508 -10.22991 -10.07442 -9.98492 -9.40193 -9.02288 -8.80154 -8.47345 -8.27452 -8.01574 -7.57133 -5.88687 -3.87994 2.31797 2.37827 3.42644 3.46565 3.51322 3.63169 3.69844 4.18092 4.37774 4.55543 4.56764 4.77346 4.79483 4.90384 5.02009 5.10650 5.32556 5.38716 5.45593 5.46293 5.53423 5.57083 5.67159 5.68599 5.75672 5.78382 5.80306 5.87332 5.94995 6.00544 6.12987 6.14401 6.23577 6.26626 6.33343 6.44270 6.57274 6.84741 6.94619 7.00337 7.08294 7.33859 7.47413 7.48319 7.56884 7.89779 7.98613 8.09093 8.17872 8.43453 9.11243 9.17785 9.73860 11.21559 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.002938 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.337352 B = 9527.945680 C =10974.457250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.144 4.144 4 C 0.113 3.887 5 H 0.100 0.900 6 O -0.556 6.556 7 C -0.165 4.165 8 C 0.126 3.874 9 N -0.753 5.753 10 C 0.510 3.490 11 O -0.494 6.494 12 C -0.122 4.122 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.493 4.493 16 H 0.049 0.951 17 C 0.079 3.921 18 N -0.882 5.882 19 Si 0.886 3.114 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.280 1.280 23 C -0.021 4.021 24 C -0.116 4.116 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.373 0.627 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.390 0.610 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.259 0.741 45 H 0.113 0.887 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 8.662 -15.582 19.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.201 4.201 4 C 0.054 3.946 5 H 0.118 0.882 6 O -0.361 6.361 7 C -0.203 4.203 8 C 0.002 3.998 9 N -0.409 5.409 10 C 0.296 3.704 11 O -0.365 6.365 12 C -0.163 4.163 13 C 0.061 3.939 14 H 0.090 0.910 15 C -0.530 4.530 16 H 0.067 0.933 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.206 1.206 23 C -0.021 4.021 24 C -0.134 4.134 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.223 0.777 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.131 0.869 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.097 9.322 -14.050 18.294 hybrid contribution 0.915 -0.579 -0.788 1.339 sum -6.182 8.743 -14.838 18.299 Atomic orbital electron populations 1.21889 0.94590 1.02215 1.02085 1.21817 0.96636 0.97424 0.98704 1.21761 1.01713 0.95150 1.01483 1.21930 0.80819 0.93807 0.98071 0.88195 1.86633 1.19012 1.80952 1.49522 1.22591 1.02426 0.96695 0.98553 1.21095 1.00099 0.82420 0.96231 1.46224 1.60372 1.12651 1.21647 1.20898 0.79734 0.87930 0.81796 1.90765 1.37084 1.74937 1.33731 1.21793 0.99313 0.92193 1.02962 1.17823 0.95965 0.87682 0.92381 0.91034 1.20639 0.89676 1.49761 0.92941 0.93257 1.24802 0.97657 0.94142 0.95814 1.69903 1.35176 1.49280 0.97501 0.86764 0.86598 0.78311 0.76900 1.20235 1.21430 1.20565 1.20761 0.90574 0.98971 0.91813 1.20943 0.99515 0.92954 0.99956 1.20969 0.98382 0.96706 0.98948 1.20786 1.00616 0.98587 0.97454 1.20979 1.00649 0.94236 0.98757 1.21091 0.97400 0.96245 0.98979 0.92051 0.92371 0.92549 0.91048 0.91987 0.92973 0.92660 0.78032 0.90197 0.91165 0.91363 0.92277 0.77735 0.91777 0.90645 0.93109 0.86938 0.87709 0.87842 0.87669 0.86851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.85 37.16 0.33 -0.63 16 2 C -0.13 -0.88 2.69 -90.62 -0.24 -1.13 16 3 C -0.14 -1.04 9.05 37.16 0.34 -0.70 16 4 C 0.11 1.00 2.55 -26.73 -0.07 0.93 16 5 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 6 O -0.56 -5.73 12.20 -35.23 -0.43 -6.16 16 7 C -0.16 -1.48 4.79 -26.73 -0.13 -1.61 16 8 C 0.13 1.73 5.57 -4.05 -0.02 1.71 16 9 N -0.75 -11.20 5.56 -60.30 -0.33 -11.54 16 10 C 0.51 10.34 7.58 -10.99 -0.08 10.26 16 11 O -0.49 -12.72 14.98 5.56 0.08 -12.63 16 12 C -0.12 -2.38 4.95 -27.88 -0.14 -2.52 16 13 C 0.08 1.95 1.67 -92.92 -0.16 1.79 16 14 H 0.07 1.99 6.98 -51.93 -0.36 1.63 16 15 C -0.49 -13.46 6.37 -34.44 -0.22 -13.68 16 16 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 17 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 18 N -0.88 -26.34 12.87 55.43 0.71 -25.63 16 19 Si 0.89 22.68 29.54 -169.99 -5.02 17.65 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.12 -2.36 8.86 -39.58 -0.35 -2.71 16 25 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 26 C -0.16 -2.75 10.05 -39.59 -0.40 -3.14 16 27 C -0.13 -2.39 10.05 -39.59 -0.40 -2.79 16 28 C -0.12 -2.54 9.67 -39.58 -0.38 -2.93 16 29 H 0.06 0.37 6.32 -51.93 -0.33 0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.48 7.68 -51.93 -0.40 0.08 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.37 2.60 9.05 45.56 0.41 3.01 16 37 H 0.08 0.63 6.17 -51.92 -0.32 0.31 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.10 7.82 -51.93 -0.41 0.70 16 40 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 41 H 0.39 4.43 8.47 -40.82 -0.35 4.08 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.35 7.78 -51.93 -0.40 0.95 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.11 2.21 7.76 -52.49 -0.41 1.80 16 46 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 47 H 0.10 1.52 8.06 -52.48 -0.42 1.09 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.45 7.95 -52.49 -0.42 2.03 16 LS Contribution 398.99 15.07 6.01 6.01 Total: -1.00 -33.90 398.99 -9.49 -43.39 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -7.60 Total: 7.60 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.92 Total: -18.70 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.38 Total: -37.16 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.35 Total: -18.79 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.90 -9.49 -43.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356204722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.705 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds