Wall clock time and date at job start Tue Mar 31 2020 13:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 C 1.52995 * 109.47251 * 120.00428 * 2 1 3 5 5 H 1.09010 * 109.47079 * 300.00104 * 4 2 1 6 6 O 1.42892 * 109.47282 * 179.97438 * 4 2 1 7 7 C 1.52999 * 109.47382 * 59.99701 * 4 2 1 8 8 C 1.52994 * 109.47419 * 185.00046 * 7 4 2 9 9 N 1.46498 * 109.47472 * 179.97438 * 8 7 4 10 10 C 1.34769 * 120.00329 * 179.97438 * 9 8 7 11 11 O 1.21280 * 120.00220 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00094 * 180.02562 * 10 9 8 13 13 C 1.53007 * 109.47204 * 180.02562 * 12 10 9 14 14 H 1.08999 * 109.47243 * 54.99792 * 13 12 10 15 15 C 1.50694 * 109.46650 * 294.99929 * 13 12 10 16 16 H 1.08004 * 120.00640 * 325.84925 * 15 13 12 17 17 C 1.37885 * 119.99700 * 145.84799 * 15 13 12 18 18 N 1.31512 * 119.99732 * 6.12161 * 17 15 13 19 19 Si 1.86797 * 119.99958 * 186.11756 * 17 15 13 20 20 H 1.48501 * 109.47353 * 60.00078 * 19 17 15 21 21 H 1.48505 * 109.47128 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47324 * 300.00118 * 19 17 15 23 23 C 1.50698 * 109.46792 * 175.00068 * 13 12 10 24 24 C 1.38238 * 120.00008 * 63.46610 * 23 13 12 25 25 C 1.38235 * 119.99426 * 179.78030 * 24 23 13 26 26 C 1.38233 * 120.00356 * 0.44448 * 25 24 23 27 27 C 1.38231 * 120.00130 * 359.80714 * 26 25 24 28 28 C 1.38234 * 120.00128 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46656 * 300.00071 * 1 2 3 31 31 H 1.09003 * 109.47201 * 59.99636 * 1 2 3 32 32 H 1.08997 * 109.46813 * 240.00492 * 2 1 3 33 33 H 1.08993 * 109.47294 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47697 * 300.00612 * 3 2 1 35 35 H 1.09010 * 109.46685 * 60.00187 * 3 2 1 36 36 H 0.96704 * 114.00413 * 300.00145 * 6 4 2 37 37 H 1.09009 * 109.46886 * 305.00396 * 7 4 2 38 38 H 1.08998 * 109.46678 * 64.99658 * 7 4 2 39 39 H 1.08999 * 109.46948 * 300.00342 * 8 7 4 40 40 H 1.09011 * 109.46923 * 60.00146 * 8 7 4 41 41 H 0.97003 * 119.99812 * 0.02562 * 9 8 7 42 42 H 1.08999 * 109.47436 * 300.00260 * 12 10 9 43 43 H 1.08998 * 109.47214 * 60.00170 * 12 10 9 44 44 H 0.97007 * 119.99596 * 180.02562 * 18 17 15 45 45 H 1.07990 * 120.00301 * 359.97438 * 24 23 13 46 46 H 1.08003 * 119.99936 * 180.27049 * 25 24 23 47 47 H 1.08005 * 120.00024 * 179.83044 * 26 25 24 48 48 H 1.08000 * 120.00468 * 179.97438 * 27 26 25 49 49 H 1.07994 * 120.00376 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6767 -0.2075 2.1392 6 8 3.4690 -0.7218 1.2488 7 6 1.5300 -2.1638 1.2491 8 6 1.9348 -2.8479 2.5564 9 7 1.4459 -4.2289 2.5567 10 6 1.6867 -5.0288 3.6142 11 8 2.3078 -4.6053 4.5660 12 6 1.1843 -6.4496 3.6142 13 6 1.5890 -7.1337 4.9216 14 1 1.2294 -6.5456 5.7659 15 6 3.0906 -7.2419 4.9879 16 1 3.6611 -7.4008 4.0848 17 6 3.7363 -7.1378 6.2018 18 7 3.0380 -7.0651 7.3139 19 14 5.6028 -7.1001 6.2667 20 1 6.1015 -5.9341 5.4940 21 1 6.0468 -6.9850 7.6791 22 1 6.1439 -8.3517 5.6787 23 6 0.9832 -8.5125 4.9754 24 6 1.3493 -9.4653 4.0431 25 6 0.7969 -10.7314 4.0953 26 6 -0.1284 -11.0420 5.0742 27 6 -0.4983 -10.0877 6.0034 28 6 0.0574 -8.8230 5.9540 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.8620 -1.1637 0.4837 37 1 0.4436 -2.1651 1.1596 38 1 1.9646 -2.7027 0.4073 39 1 3.0211 -2.8466 2.6459 40 1 1.5002 -2.3089 3.3983 41 1 0.9496 -4.5678 1.7953 42 1 0.0980 -6.4509 3.5250 43 1 1.6186 -6.9886 2.7722 44 1 3.4923 -6.9915 8.1678 45 1 2.0691 -9.2214 3.2759 46 1 1.0861 -11.4771 3.3696 47 1 -0.5620 -12.0304 5.1133 48 1 -1.2215 -10.3302 6.7679 49 1 -0.2320 -8.0773 6.6796 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356204722.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:59 Heat of formation + Delta-G solvation = -112.918359 kcal Electronic energy + Delta-G solvation = -26578.026096 eV Core-core repulsion = 22888.898389 eV Total energy + Delta-G solvation = -3689.127706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.69018 -39.80077 -39.35703 -36.13927 -35.52817 -35.08705 -33.43281 -31.95885 -31.48359 -30.18741 -28.01205 -27.56941 -26.14956 -24.35920 -23.13672 -22.77350 -21.76839 -21.28618 -20.78305 -18.51152 -17.96239 -17.50781 -17.12561 -16.95666 -16.60823 -16.40405 -16.07709 -15.63269 -15.49055 -15.28157 -15.13200 -14.47721 -14.46532 -14.09143 -13.97692 -13.84171 -13.55178 -13.46631 -13.16898 -13.06535 -12.87385 -12.81496 -12.71086 -12.53923 -12.49219 -12.33498 -11.99539 -11.81707 -11.76837 -11.67627 -11.40093 -11.30545 -10.95838 -10.84176 -10.56505 -10.29596 -9.89336 -9.52739 -9.17479 -8.03949 -6.06107 0.79340 0.85704 1.34447 1.39937 1.43963 2.01195 2.41803 2.46423 3.19840 3.36977 3.48965 3.69023 3.89954 4.06491 4.14832 4.22297 4.27017 4.31461 4.37834 4.42588 4.48571 4.56637 4.61897 4.65677 4.68928 4.76243 4.81338 4.84975 4.94509 5.00519 5.02107 5.05585 5.12184 5.15694 5.25123 5.29647 5.39361 5.44870 5.50154 5.54426 5.64404 5.67885 5.79516 5.85208 5.97186 6.18735 6.43238 6.48066 6.84020 6.88539 7.01890 7.56617 7.65135 9.05711 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.002938 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.337352 B = 9527.945680 C =10974.457250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.144 4.144 4 C 0.113 3.887 5 H 0.084 0.916 6 O -0.579 6.579 7 C -0.148 4.148 8 C 0.126 3.874 9 N -0.728 5.728 10 C 0.506 3.494 11 O -0.561 6.561 12 C -0.115 4.115 13 C 0.083 3.917 14 H 0.022 0.978 15 C -0.486 4.486 16 H 0.047 0.953 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.934 3.066 20 H -0.285 1.285 21 H -0.289 1.289 22 H -0.265 1.265 23 C -0.046 4.046 24 C -0.127 4.127 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.144 4.144 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.386 0.614 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.039 0.961 41 H 0.413 0.587 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.253 0.747 45 H 0.116 0.884 46 H 0.141 0.859 47 H 0.144 0.856 48 H 0.131 0.869 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.687 6.841 -18.782 21.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.202 4.202 4 C 0.054 3.946 5 H 0.102 0.898 6 O -0.386 6.386 7 C -0.186 4.186 8 C 0.002 3.998 9 N -0.383 5.383 10 C 0.294 3.706 11 O -0.437 6.437 12 C -0.155 4.155 13 C 0.064 3.936 14 H 0.040 0.960 15 C -0.524 4.524 16 H 0.065 0.935 17 C -0.176 4.176 18 N -0.557 5.557 19 Si 0.761 3.239 20 H -0.211 1.211 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.235 0.765 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.249 0.751 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.134 0.866 46 H 0.159 0.841 47 H 0.161 0.839 48 H 0.149 0.851 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.295 7.492 -17.336 20.627 hybrid contribution 1.191 -0.024 0.132 1.199 sum -7.103 7.469 -17.204 20.055 Atomic orbital electron populations 1.21903 0.93870 1.02728 1.02318 1.21733 0.97096 0.96936 0.97907 1.21762 1.01178 0.95521 1.01691 1.21934 0.80315 0.93730 0.98661 0.89812 1.86603 1.19928 1.81367 1.50744 1.22503 1.03711 0.96311 0.96053 1.21135 0.98338 0.81760 0.98563 1.45933 1.59016 1.12581 1.20786 1.21126 0.78898 0.88656 0.81968 1.90747 1.40346 1.76185 1.36422 1.21675 1.01164 0.91527 1.01183 1.17604 0.94257 0.88896 0.92878 0.96010 1.20972 0.91668 1.47478 0.92291 0.93495 1.25485 1.01070 0.95014 0.96002 1.70048 1.36145 1.51905 0.97636 0.85997 0.82866 0.78381 0.76669 1.21084 1.21462 1.18938 1.20572 0.92217 0.98269 0.93573 1.21037 1.00029 0.93729 0.99733 1.21373 0.97356 0.96221 0.99432 1.21261 0.99505 0.99808 0.95977 1.21279 1.00565 0.93107 0.99657 1.21099 0.98727 0.97527 0.98886 0.91369 0.92928 0.91611 0.89628 0.92840 0.91766 0.93459 0.76456 0.88230 0.89084 0.94057 0.94223 0.75071 0.88937 0.88427 0.93817 0.86594 0.84097 0.83855 0.85084 0.88950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.85 71.98 0.64 -0.93 16 2 C -0.12 -1.41 2.69 -10.79 -0.03 -1.44 16 3 C -0.14 -1.91 9.05 71.98 0.65 -1.26 16 4 C 0.11 1.90 2.55 30.59 0.08 1.98 16 5 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 6 O -0.58 -11.75 12.20 -148.98 -1.82 -13.57 16 7 C -0.15 -2.38 4.79 30.59 0.15 -2.24 16 8 C 0.13 3.50 5.57 86.38 0.48 3.98 16 9 N -0.73 -21.11 5.56 -463.07 -2.57 -23.68 16 10 C 0.51 20.93 7.58 87.66 0.66 21.59 16 11 O -0.56 -30.45 14.98 -3.03 -0.05 -30.50 16 12 C -0.12 -4.48 4.95 29.85 0.15 -4.33 16 13 C 0.08 4.15 1.67 -12.29 -0.02 4.13 16 14 H 0.02 1.29 6.98 -2.39 -0.02 1.27 16 15 C -0.49 -27.32 6.37 25.60 0.16 -27.15 16 16 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 17 C 0.02 1.36 5.45 84.66 0.46 1.82 16 18 N -0.92 -57.74 12.87 21.45 0.28 -57.46 16 19 Si 0.93 47.89 29.54 68.60 2.03 49.92 16 20 H -0.28 -14.80 7.11 99.48 0.71 -14.09 16 21 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 23 C -0.05 -2.06 4.77 -19.86 -0.09 -2.16 16 24 C -0.13 -4.97 8.86 22.27 0.20 -4.77 16 25 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 26 C -0.15 -4.59 10.05 22.27 0.22 -4.36 16 27 C -0.13 -4.52 10.05 22.27 0.22 -4.30 16 28 C -0.14 -6.25 9.67 22.27 0.22 -6.04 16 29 H 0.07 0.62 6.32 -2.39 -0.02 0.60 16 30 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.80 7.68 -2.39 -0.02 0.78 16 34 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.39 5.01 9.05 -74.05 -0.67 4.34 16 37 H 0.10 1.27 6.17 -2.38 -0.01 1.25 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 1.39 7.82 -2.39 -0.02 1.37 16 40 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.41 8.30 8.47 -92.71 -0.79 7.52 16 42 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 43 H 0.10 3.34 7.78 -2.39 -0.02 3.32 16 44 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 45 H 0.12 4.34 7.76 -2.92 -0.02 4.32 16 46 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 47 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 48 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 49 H 0.09 4.26 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -79.17 398.99 1.72 -77.45 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.52 Total: 27.18 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 4.37 Total: -29.34 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -2.30 Total: -81.14 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.86 Total: -44.06 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -79.17 1.72 -77.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356204722.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.468 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds