Wall clock time and date at job start Tue Mar 31 2020 13:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47175 * 2 1 4 4 C 1.53001 * 109.46875 * 239.99980 * 2 1 3 5 5 C 1.52994 * 109.47005 * 60.00053 * 4 2 1 6 6 O 1.42900 * 109.47025 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47130 * 119.99962 * 2 1 3 8 8 N 1.46503 * 109.47206 * 300.00236 * 7 2 1 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 2 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09000 * 109.46529 * 300.00331 * 1 2 3 29 29 H 1.08996 * 109.46768 * 60.00009 * 1 2 3 30 30 H 1.08991 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46766 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47088 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.47028 * 59.99952 * 3 2 1 34 34 H 1.08999 * 109.46538 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46969 * 300.00120 * 4 2 1 36 36 H 1.08997 * 109.47735 * 299.99863 * 5 4 2 37 37 H 1.09002 * 109.47203 * 60.00209 * 5 4 2 38 38 H 0.96703 * 114.00316 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.47176 * 179.97438 * 7 2 1 40 40 H 1.09002 * 109.47082 * 59.99655 * 7 2 1 41 41 H 0.97001 * 120.00018 * 359.97438 * 8 7 2 42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 44 44 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 48 48 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 0.0000 -2.4984 6 8 2.0068 -0.6733 -3.6652 7 6 2.0401 -0.7212 1.2493 8 7 1.5517 -0.0307 2.4454 9 6 1.8777 -0.4908 3.6695 10 8 2.5750 -1.4769 3.7808 11 6 1.3758 0.2199 4.9000 12 6 1.8857 -0.5014 6.1492 13 1 2.9705 -0.5949 6.0975 14 6 1.2664 -1.8733 6.2252 15 1 0.2841 -2.0459 5.8108 16 6 1.9537 -2.9077 6.8238 17 7 3.0904 -2.6714 7.4416 18 14 1.2704 -4.6450 6.7571 19 1 0.3933 -4.8775 7.9327 20 1 0.4833 -4.8199 5.5101 21 1 2.3914 -5.6188 6.7756 22 6 1.5076 0.2891 7.3753 23 6 0.1757 0.4628 7.7020 24 6 -0.1711 1.1846 8.8287 25 6 0.8138 1.7396 9.6243 26 6 2.1456 1.5702 9.2946 27 6 2.4924 0.8451 8.1701 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4400 0.0001 -2.4985 37 1 1.8934 1.0277 -2.4984 38 1 1.7211 -0.2700 -4.4964 39 1 3.1300 -0.7216 1.2490 40 1 1.6767 -1.7489 1.2493 41 1 0.9943 0.7582 2.3565 42 1 0.2858 0.2199 4.9003 43 1 1.7392 1.2475 4.8997 44 1 3.4838 -1.7854 7.4113 45 1 -0.5939 0.0324 7.0783 46 1 -1.2116 1.3172 9.0861 47 1 0.5428 2.3058 10.5032 48 1 2.9151 2.0042 9.9160 49 1 3.5329 0.7125 7.9128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356389923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:13 Heat of formation + Delta-G solvation = -87.191109 kcal Electronic energy + Delta-G solvation = -27020.036024 eV Core-core repulsion = 23332.023935 eV Total energy + Delta-G solvation = -3688.012089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.60089 -38.63673 -37.96996 -36.47441 -34.28206 -33.20588 -31.30503 -30.10659 -29.36657 -28.76021 -27.55041 -26.79707 -24.85354 -23.23230 -22.50014 -21.65443 -20.23163 -19.56010 -18.91216 -17.73736 -16.87765 -16.30073 -15.91185 -15.71410 -15.49966 -15.08668 -14.59322 -14.28657 -14.13928 -13.86609 -13.73619 -13.62811 -13.30239 -13.00561 -12.90651 -12.59304 -12.35540 -12.28329 -11.91557 -11.85489 -11.82660 -11.80424 -11.43317 -11.05233 -11.00938 -10.84323 -10.68525 -10.60315 -10.42046 -10.14828 -10.12755 -10.02695 -9.64018 -9.00070 -8.63554 -8.53051 -8.23698 -8.13525 -7.62272 -6.21076 -3.88467 2.19552 2.25509 3.49575 3.52800 3.57805 3.58379 3.71373 4.03951 4.46594 4.54502 4.62088 4.68277 4.75242 4.88644 5.07998 5.13018 5.27137 5.40079 5.44312 5.57447 5.59612 5.60098 5.63802 5.66339 5.72311 5.76824 5.83209 5.85709 5.88785 5.98730 6.01422 6.10072 6.15595 6.18452 6.20514 6.32146 6.43176 6.70465 6.79930 6.91741 6.94157 7.21431 7.23261 7.31058 7.39305 7.73476 7.86598 8.06459 8.25062 8.53298 8.99650 9.06386 9.80794 11.19423 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003174 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.063526 B = 8819.359198 C =10146.234679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.073 3.927 6 O -0.576 6.576 7 C 0.134 3.866 8 N -0.747 5.747 9 C 0.512 3.488 10 O -0.500 6.500 11 C -0.117 4.117 12 C 0.072 3.928 13 H 0.051 0.949 14 C -0.567 4.567 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.066 2.934 19 H -0.291 1.291 20 H -0.290 1.290 21 H -0.285 1.285 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.378 0.622 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.391 0.609 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.270 0.730 45 H 0.114 0.886 46 H 0.107 0.893 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 11.669 -14.889 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.004 4.004 6 O -0.382 6.382 7 C 0.010 3.990 8 N -0.403 5.403 9 C 0.299 3.701 10 O -0.371 6.371 11 C -0.157 4.157 12 C 0.053 3.947 13 H 0.069 0.931 14 C -0.605 4.605 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.542 5.542 18 Si 0.895 3.105 19 H -0.219 1.219 20 H -0.217 1.217 21 H -0.211 1.211 22 C -0.031 4.031 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.172 4.172 26 C -0.142 4.142 27 C -0.148 4.148 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.224 0.776 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.225 0.775 42 H 0.096 0.904 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.132 0.868 46 H 0.125 0.875 47 H 0.124 0.876 48 H 0.125 0.875 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.709 8.962 -13.796 17.112 hybrid contribution -0.909 2.257 -0.875 2.585 sum -5.618 11.219 -14.671 19.304 Atomic orbital electron populations 1.21964 0.94050 1.02532 1.01778 1.20725 0.96243 0.95983 0.94326 1.21963 1.01562 0.94961 1.01792 1.21462 1.01801 0.99932 0.91429 1.22341 0.97541 0.95163 0.85363 1.86488 1.77665 1.57746 1.16271 1.21182 0.98902 0.95972 0.82993 1.46200 1.55896 1.32613 1.05628 1.20844 0.80461 0.84953 0.83887 1.90749 1.35727 1.24570 1.86062 1.21680 1.01482 0.98200 0.94371 1.17862 0.98205 0.93361 0.85250 0.93113 1.21545 1.04017 0.92761 1.42133 0.93678 1.25571 0.95441 1.03723 0.92599 1.70723 1.19151 1.25988 1.38335 0.83597 0.75460 0.75723 0.75671 1.21860 1.21674 1.21105 1.20839 0.92562 0.91220 0.98499 1.20913 0.96535 0.98241 0.96954 1.21010 0.98283 0.99454 0.96024 1.20822 0.93293 1.02895 1.00144 1.20964 0.95791 1.00077 0.97409 1.21068 0.99158 0.98659 0.95956 0.92206 0.92453 0.92094 0.92189 0.92441 0.92232 0.90844 0.90786 0.93361 0.93405 0.77584 0.91915 0.91742 0.77469 0.90387 0.91792 0.91844 0.86758 0.87469 0.87602 0.87476 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 7.95 37.16 0.30 -0.97 16 2 C -0.07 -0.69 0.56 -154.50 -0.09 -0.77 16 3 C -0.15 -1.21 7.95 37.16 0.30 -0.91 16 4 C -0.11 -1.03 4.64 -26.73 -0.12 -1.16 16 5 C 0.07 0.58 6.34 37.15 0.24 0.82 16 6 O -0.58 -5.13 13.66 -35.23 -0.48 -5.61 16 7 C 0.13 1.80 4.56 -4.04 -0.02 1.78 16 8 N -0.75 -10.87 4.96 -60.29 -0.30 -11.17 16 9 C 0.51 10.19 7.58 -10.98 -0.08 10.11 16 10 O -0.50 -12.60 15.02 5.55 0.08 -12.52 16 11 C -0.12 -2.27 4.94 -27.88 -0.14 -2.40 16 12 C 0.07 1.74 1.31 -92.92 -0.12 1.62 16 13 H 0.05 1.38 6.23 -51.93 -0.32 1.05 16 14 C -0.57 -15.52 6.40 -34.44 -0.22 -15.74 16 15 H 0.04 1.24 7.82 -52.49 -0.41 0.83 16 16 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 17 N -0.91 -27.90 13.63 55.43 0.76 -27.14 16 18 Si 1.07 26.67 29.91 -169.99 -5.08 21.58 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 C -0.03 -0.68 4.77 -104.62 -0.50 -1.18 16 23 C -0.11 -2.21 8.88 -39.59 -0.35 -2.56 16 24 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 25 C -0.15 -2.67 10.05 -39.58 -0.40 -3.07 16 26 C -0.12 -2.29 10.05 -39.59 -0.40 -2.69 16 27 C -0.13 -2.74 9.67 -39.59 -0.38 -3.12 16 28 H 0.06 0.51 6.86 -51.93 -0.36 0.16 16 29 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.39 6.43 -51.93 -0.33 0.06 16 33 H 0.06 0.49 6.86 -51.93 -0.36 0.13 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.33 6.43 -51.93 -0.33 0.00 16 37 H 0.05 0.33 6.43 -51.93 -0.33 -0.01 16 38 H 0.38 1.56 9.12 45.56 0.42 1.97 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.39 4.50 6.16 -40.82 -0.25 4.24 16 42 H 0.08 1.41 7.86 -51.93 -0.41 1.00 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.27 8.22 6.68 -40.82 -0.27 7.94 16 45 H 0.11 2.27 7.80 -52.48 -0.41 1.86 16 46 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 48 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.29 7.95 -52.49 -0.42 1.87 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -34.95 389.88 -8.79 -43.74 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.15 Total: 7.39 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.49 Total: -22.15 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.46 Total: -38.31 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.40 Total: -18.13 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -5.08 Total: 21.58 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.95 -8.79 -43.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356389923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.453 kcal (2) G-P(sol) polarization free energy of solvation -34.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds