Wall clock time and date at job start Tue Mar 31 2020 13:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.47175 * 2 1 4 4 C 1.53001 * 109.46875 * 239.99980 * 2 1 3 5 5 C 1.52994 * 109.47005 * 60.00053 * 4 2 1 6 6 O 1.42900 * 109.47025 * 179.97438 * 5 4 2 7 7 C 1.53001 * 109.47130 * 119.99962 * 2 1 3 8 8 N 1.46503 * 109.47206 * 300.00236 * 7 2 1 9 9 C 1.34774 * 119.99939 * 180.02562 * 8 7 2 10 10 O 1.21284 * 120.00090 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99980 * 179.97438 * 9 8 7 12 12 C 1.52994 * 109.46995 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.47363 * 54.05802 * 12 11 9 14 14 C 1.50705 * 109.47281 * 294.05789 * 12 11 9 15 15 H 1.07999 * 119.99468 * 330.08103 * 14 12 11 16 16 C 1.37873 * 120.00025 * 150.08844 * 14 12 11 17 17 N 1.31511 * 120.00099 * 6.55948 * 16 14 12 18 18 Si 1.86805 * 119.99647 * 186.56809 * 16 14 12 19 19 H 1.48498 * 109.47129 * 269.99471 * 18 16 14 20 20 H 1.48498 * 109.47291 * 29.99590 * 18 16 14 21 21 H 1.48503 * 109.46813 * 149.99580 * 18 16 14 22 22 C 1.50704 * 109.47072 * 174.05777 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.29986 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09000 * 109.46529 * 300.00331 * 1 2 3 29 29 H 1.08996 * 109.46768 * 60.00009 * 1 2 3 30 30 H 1.08991 * 109.46981 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46766 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47088 * 300.00134 * 3 2 1 33 33 H 1.09000 * 109.47028 * 59.99952 * 3 2 1 34 34 H 1.08999 * 109.46538 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46969 * 300.00120 * 4 2 1 36 36 H 1.08997 * 109.47735 * 299.99863 * 5 4 2 37 37 H 1.09002 * 109.47203 * 60.00209 * 5 4 2 38 38 H 0.96703 * 114.00316 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.47176 * 179.97438 * 7 2 1 40 40 H 1.09002 * 109.47082 * 59.99655 * 7 2 1 41 41 H 0.97001 * 120.00018 * 359.97438 * 8 7 2 42 42 H 1.08999 * 109.46642 * 59.99829 * 11 9 8 43 43 H 1.09002 * 109.46876 * 299.99722 * 11 9 8 44 44 H 0.96995 * 120.00371 * 354.73583 * 17 16 14 45 45 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 46 46 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 47 47 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 48 48 H 1.08002 * 119.99754 * 179.97438 * 26 25 24 49 49 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 0.0000 -2.4984 6 8 2.0068 -0.6733 -3.6652 7 6 2.0401 -0.7212 1.2493 8 7 1.5517 -0.0307 2.4454 9 6 1.8777 -0.4908 3.6695 10 8 2.5750 -1.4769 3.7808 11 6 1.3758 0.2199 4.9000 12 6 1.8857 -0.5014 6.1492 13 1 2.9705 -0.5949 6.0975 14 6 1.2664 -1.8733 6.2252 15 1 0.2841 -2.0459 5.8108 16 6 1.9537 -2.9077 6.8238 17 7 3.0904 -2.6714 7.4416 18 14 1.2704 -4.6450 6.7571 19 1 0.3933 -4.8775 7.9327 20 1 0.4833 -4.8199 5.5101 21 1 2.3914 -5.6188 6.7756 22 6 1.5076 0.2891 7.3753 23 6 0.1757 0.4628 7.7020 24 6 -0.1711 1.1846 8.8287 25 6 0.8138 1.7396 9.6243 26 6 2.1456 1.5702 9.2946 27 6 2.4924 0.8451 8.1701 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6768 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 0.4400 0.0001 -2.4985 37 1 1.8934 1.0277 -2.4984 38 1 1.7211 -0.2700 -4.4964 39 1 3.1300 -0.7216 1.2490 40 1 1.6767 -1.7489 1.2493 41 1 0.9943 0.7582 2.3565 42 1 0.2858 0.2199 4.9003 43 1 1.7392 1.2475 4.8997 44 1 3.4838 -1.7854 7.4113 45 1 -0.5939 0.0324 7.0783 46 1 -1.2116 1.3172 9.0861 47 1 0.5428 2.3058 10.5032 48 1 2.9151 2.0042 9.9160 49 1 3.5329 0.7125 7.9128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356389923.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:12 Heat of formation + Delta-G solvation = -111.129034 kcal Electronic energy + Delta-G solvation = -27021.074050 eV Core-core repulsion = 23332.023935 eV Total energy + Delta-G solvation = -3689.050115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97719 -40.01044 -39.18359 -37.28803 -36.09243 -34.56622 -33.25590 -31.60731 -30.70015 -29.72708 -28.23810 -28.03872 -26.61160 -24.75754 -23.63502 -23.16724 -21.79222 -21.16777 -19.77593 -18.85698 -18.43214 -17.82698 -17.24282 -16.91631 -16.57103 -16.33542 -15.94083 -15.67450 -15.65121 -15.26169 -15.14080 -14.65971 -14.51728 -14.41199 -14.07342 -14.01556 -13.89088 -13.53193 -13.44952 -13.14316 -12.83232 -12.64519 -12.58720 -12.56227 -12.54857 -12.07440 -11.97098 -11.83273 -11.78010 -11.70505 -11.48775 -11.40145 -10.74946 -10.74840 -10.62821 -10.31308 -9.96545 -9.64009 -9.26959 -8.45215 -6.10794 0.67968 0.74169 1.46115 1.58398 1.71522 1.90397 2.32375 2.60145 3.10706 3.32455 3.38981 3.62866 3.74949 4.03330 4.11158 4.13569 4.20125 4.28523 4.30052 4.36438 4.44090 4.45992 4.48963 4.57906 4.61569 4.64874 4.73818 4.81700 4.83282 4.87108 4.95276 4.97937 5.02274 5.09512 5.14443 5.14784 5.23715 5.39162 5.41588 5.43026 5.44419 5.59399 5.74768 5.82755 5.94647 6.24370 6.30982 6.39637 6.72348 6.78915 6.93154 7.53476 7.64932 8.95252 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013648 B = 0.003174 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.063526 B = 8819.359198 C =10146.234679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.110 4.110 5 C 0.077 3.923 6 O -0.601 6.601 7 C 0.132 3.868 8 N -0.720 5.720 9 C 0.509 3.491 10 O -0.564 6.564 11 C -0.111 4.111 12 C 0.074 3.926 13 H 0.006 0.994 14 C -0.557 4.557 15 H 0.039 0.961 16 C -0.025 4.025 17 N -0.943 5.943 18 Si 1.101 2.899 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.292 1.292 22 C -0.055 4.055 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.125 4.125 27 C -0.154 4.154 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.398 0.602 39 H 0.046 0.954 40 H 0.042 0.958 41 H 0.411 0.589 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.258 0.742 45 H 0.115 0.885 46 H 0.143 0.857 47 H 0.147 0.853 48 H 0.134 0.866 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 14.320 -15.187 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.059 4.059 3 C -0.202 4.202 4 C -0.148 4.148 5 C 0.000 4.000 6 O -0.410 6.410 7 C 0.008 3.992 8 N -0.376 5.376 9 C 0.297 3.703 10 O -0.441 6.441 11 C -0.151 4.151 12 C 0.055 3.945 13 H 0.024 0.976 14 C -0.595 4.595 15 H 0.057 0.943 16 C -0.224 4.224 17 N -0.581 5.581 18 Si 0.926 3.074 19 H -0.198 1.198 20 H -0.206 1.206 21 H -0.218 1.218 22 C -0.056 4.056 23 C -0.141 4.141 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.249 0.751 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.133 0.867 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.152 0.848 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.541 11.680 -14.146 19.835 hybrid contribution -0.059 1.551 -0.833 1.762 sum -7.600 13.232 -14.979 21.383 Atomic orbital electron populations 1.21981 0.92785 1.02286 1.03228 1.20598 0.97061 0.96325 0.91897 1.21977 1.01132 0.93834 1.03251 1.21447 1.01061 0.99560 0.92746 1.22324 0.98293 0.95308 0.84124 1.86434 1.78198 1.58735 1.17589 1.21269 0.98031 0.95575 0.84331 1.45904 1.54672 1.32576 1.04463 1.21026 0.79671 0.84157 0.85487 1.90731 1.38783 1.27465 1.87087 1.21580 1.02380 0.98949 0.92190 1.17687 0.95303 0.93070 0.88473 0.97599 1.21816 1.03226 0.94515 1.39906 0.94274 1.26721 0.95554 1.07157 0.92923 1.70813 1.20722 1.25390 1.41208 0.83138 0.75178 0.72347 0.76719 1.19789 1.20604 1.21839 1.20621 0.93965 0.92966 0.98033 1.21004 0.95440 0.99263 0.98380 1.21412 1.00429 0.97733 0.94601 1.21311 0.92366 1.01778 1.00780 1.21294 0.97531 0.99044 0.96417 1.21121 0.98345 1.00273 0.97450 0.91878 0.89867 0.93247 0.93020 0.89914 0.91826 0.92130 0.92306 0.91842 0.91733 0.75229 0.93580 0.93931 0.75141 0.88510 0.88941 0.93158 0.86743 0.83879 0.83541 0.84766 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 7.95 71.98 0.57 -1.63 16 2 C -0.06 -1.05 0.56 -52.18 -0.03 -1.07 16 3 C -0.14 -2.08 7.95 71.98 0.57 -1.51 16 4 C -0.11 -2.05 4.64 30.59 0.14 -1.91 16 5 C 0.08 1.04 6.34 71.98 0.46 1.49 16 6 O -0.60 -9.70 13.66 -148.98 -2.03 -11.73 16 7 C 0.13 3.66 4.56 86.38 0.39 4.06 16 8 N -0.72 -20.92 4.96 -463.05 -2.30 -23.22 16 9 C 0.51 20.89 7.58 87.66 0.66 21.56 16 10 O -0.56 -30.20 15.02 -3.04 -0.05 -30.24 16 11 C -0.11 -4.33 4.94 29.85 0.15 -4.18 16 12 C 0.07 3.69 1.31 -12.29 -0.02 3.68 16 13 H 0.01 0.34 6.23 -2.39 -0.01 0.32 16 14 C -0.56 -31.50 6.40 25.60 0.16 -31.34 16 15 H 0.04 2.20 7.82 -2.91 -0.02 2.17 16 16 C -0.03 -1.52 5.45 84.65 0.46 -1.06 16 17 N -0.94 -61.04 13.63 21.45 0.29 -60.75 16 18 Si 1.10 55.21 29.91 68.60 2.05 57.26 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 22 C -0.06 -2.49 4.77 -19.87 -0.09 -2.58 16 23 C -0.12 -4.85 8.88 22.27 0.20 -4.65 16 24 C -0.12 -4.03 10.05 22.27 0.22 -3.81 16 25 C -0.14 -4.46 10.05 22.27 0.22 -4.24 16 26 C -0.12 -4.36 10.05 22.27 0.22 -4.14 16 27 C -0.15 -6.57 9.67 22.27 0.22 -6.35 16 28 H 0.06 0.91 6.86 -2.39 -0.02 0.90 16 29 H 0.08 0.86 6.43 -2.39 -0.02 0.84 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.81 6.43 -2.39 -0.02 0.80 16 33 H 0.06 0.87 6.86 -2.39 -0.02 0.85 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 0.67 6.43 -2.39 -0.02 0.66 16 37 H 0.06 0.67 6.43 -2.39 -0.02 0.65 16 38 H 0.40 2.44 9.12 -74.06 -0.68 1.77 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.41 8.74 6.16 -92.71 -0.57 8.16 16 42 H 0.10 3.40 7.86 -2.39 -0.02 3.38 16 43 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 44 H 0.26 16.80 6.68 -92.71 -0.62 16.18 16 45 H 0.11 4.41 7.80 -2.91 -0.02 4.38 16 46 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 47 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 48 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 49 H 0.09 4.18 7.95 -2.91 -0.02 4.16 16 Total: -1.00 -81.47 389.88 2.34 -79.13 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.15 Total: 27.23 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.52 Total: -37.68 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -2.00 Total: -83.96 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -2.08 Total: -41.98 kcal Atomic # 14 Polarization: 55.21 SS G_CDS: 2.05 Total: 57.26 kcal Total: -81.47 2.34 -79.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356389923.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.995 kcal (2) G-P(sol) polarization free energy of solvation -81.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds