Wall clock time and date at job start Tue Mar 31 2020 13:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46893 * 240.00257 * 2 1 3 5 5 C 1.52993 * 109.47399 * 59.99950 * 4 2 1 6 6 O 1.42901 * 109.47157 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47139 * 120.00047 * 2 1 3 8 8 N 1.46505 * 109.47066 * 299.99588 * 7 2 1 9 9 C 1.34777 * 119.99960 * 179.97438 * 8 7 2 10 10 O 1.21282 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00194 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47465 * 305.00010 * 12 11 9 14 14 C 1.50698 * 109.47080 * 65.00685 * 12 11 9 15 15 H 1.08002 * 120.00223 * 26.94016 * 14 12 11 16 16 C 1.37886 * 120.00006 * 206.93845 * 14 12 11 17 17 N 1.31507 * 120.00030 * 186.61954 * 16 14 12 18 18 Si 1.86801 * 119.99698 * 6.90022 * 16 14 12 19 19 H 1.48503 * 109.46742 * 274.25466 * 18 16 14 20 20 H 1.48500 * 109.47460 * 34.25082 * 18 16 14 21 21 H 1.48499 * 109.46928 * 154.25467 * 18 16 14 22 22 C 1.50706 * 109.46940 * 184.99987 * 12 11 9 23 23 C 1.38233 * 119.99857 * 297.92917 * 22 12 11 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 12 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 118.19592 * 22 12 11 28 28 H 1.09007 * 109.47380 * 299.99965 * 1 2 3 29 29 H 1.09000 * 109.47726 * 60.00119 * 1 2 3 30 30 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46965 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46657 * 299.99652 * 3 2 1 33 33 H 1.08994 * 109.47169 * 60.00125 * 3 2 1 34 34 H 1.09000 * 109.46973 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46929 * 299.99652 * 4 2 1 36 36 H 1.09000 * 109.46918 * 299.99863 * 5 4 2 37 37 H 1.09000 * 109.47323 * 59.99944 * 5 4 2 38 38 H 0.96706 * 113.99901 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.46918 * 180.02562 * 7 2 1 40 40 H 1.09000 * 109.47323 * 59.99956 * 7 2 1 41 41 H 0.96995 * 120.00055 * 0.02562 * 8 7 2 42 42 H 1.09000 * 109.46914 * 60.00574 * 11 9 8 43 43 H 1.09000 * 109.47087 * 300.00639 * 11 9 8 44 44 H 0.96994 * 119.99996 * 180.27656 * 17 16 14 45 45 H 1.07994 * 120.00554 * 359.97438 * 23 22 12 46 46 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 47 47 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 48 48 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00162 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 0.0000 -2.4985 6 8 2.0058 -0.6740 -3.6653 7 6 2.0400 -0.7212 1.2492 8 7 1.5517 -0.0305 2.4454 9 6 1.8769 -0.4913 3.6695 10 8 2.5741 -1.4774 3.7807 11 6 1.3742 0.2188 4.9000 12 6 1.8843 -0.5024 6.1492 13 1 1.5964 -1.5528 6.1054 14 6 3.3861 -0.3954 6.2129 15 1 3.8882 0.4401 5.7479 16 6 4.1193 -1.3643 6.8649 17 7 5.4139 -1.2066 7.0340 18 14 3.2749 -2.9044 7.5009 19 1 2.7175 -2.6411 8.8519 20 1 2.1757 -3.2837 6.5773 21 1 4.2603 -4.0126 7.5792 22 6 1.2830 0.1325 7.3766 23 6 1.5466 1.4577 7.6687 24 6 0.9914 2.0414 8.7921 25 6 0.1802 1.2973 9.6284 26 6 -0.0791 -0.0294 9.3390 27 6 0.4725 -0.6117 8.2132 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1299 -0.7208 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 0.4399 0.0000 -2.4984 37 1 1.8932 1.0277 -2.4985 38 1 1.7200 -0.2706 -4.4965 39 1 3.1300 -0.7208 1.2494 40 1 1.6766 -1.7489 1.2492 41 1 0.9938 0.7579 2.3564 42 1 0.2842 0.2187 4.8997 43 1 1.7374 1.2465 4.9003 44 1 5.9303 -1.8899 7.4891 45 1 2.1836 2.0379 7.0177 46 1 1.1937 3.0779 9.0181 47 1 -0.2513 1.7526 10.5076 48 1 -0.7132 -0.6105 9.9920 49 1 0.2698 -1.6481 7.9870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356389925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:16 Heat of formation + Delta-G solvation = -81.115684 kcal Electronic energy + Delta-G solvation = -27036.285973 eV Core-core repulsion = 23348.537334 eV Total energy + Delta-G solvation = -3687.748639 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.60749 -38.69876 -37.99735 -36.46501 -34.12358 -33.20760 -31.63607 -30.20499 -29.39592 -28.79560 -27.53055 -26.99889 -25.48724 -23.15104 -22.37171 -21.81588 -20.18749 -19.32202 -18.83184 -17.69528 -16.93613 -16.51107 -15.95613 -15.69709 -15.51457 -15.02992 -14.67022 -14.34893 -14.22358 -13.93878 -13.84989 -13.60851 -13.29218 -12.99382 -12.73747 -12.65780 -12.55075 -12.29011 -12.10290 -11.85936 -11.80954 -11.79403 -11.65917 -11.11693 -11.01428 -10.92198 -10.78256 -10.59887 -10.48275 -10.32708 -10.13296 -9.87398 -9.58318 -9.13479 -8.90515 -8.55951 -8.41339 -8.20307 -7.80793 -5.96529 -3.92114 2.10064 2.15802 3.42823 3.48398 3.50502 3.52450 3.58565 4.04833 4.48318 4.53578 4.56349 4.58766 4.76980 4.90359 5.09531 5.14655 5.28136 5.31711 5.41927 5.52328 5.56219 5.56876 5.61386 5.64600 5.69691 5.74199 5.84561 5.86691 5.90048 5.95579 5.99908 6.02049 6.08778 6.19883 6.20714 6.24746 6.34105 6.60775 6.70698 6.83760 6.91828 7.06551 7.14940 7.27528 7.32438 7.60808 7.73117 7.84064 8.06268 8.55274 9.01991 9.05415 9.68050 11.16719 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.003102 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.861659 B = 9025.695051 C = 9996.521789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.072 4.072 3 C -0.146 4.146 4 C -0.108 4.108 5 C 0.073 3.927 6 O -0.577 6.577 7 C 0.133 3.867 8 N -0.746 5.746 9 C 0.512 3.488 10 O -0.501 6.501 11 C -0.115 4.115 12 C 0.048 3.952 13 H 0.053 0.947 14 C -0.482 4.482 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.899 5.899 18 Si 0.867 3.133 19 H -0.275 1.275 20 H -0.261 1.261 21 H -0.292 1.292 22 C -0.039 4.039 23 C -0.101 4.101 24 C -0.126 4.126 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.139 4.139 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.378 0.622 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.392 0.608 42 H 0.068 0.932 43 H 0.083 0.917 44 H 0.262 0.738 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 6.994 -13.682 20.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.073 4.073 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.004 4.004 6 O -0.382 6.382 7 C 0.009 3.991 8 N -0.402 5.402 9 C 0.298 3.702 10 O -0.372 6.372 11 C -0.155 4.155 12 C 0.029 3.971 13 H 0.071 0.929 14 C -0.519 4.519 15 H 0.089 0.911 16 C -0.118 4.118 17 N -0.537 5.537 18 Si 0.695 3.305 19 H -0.201 1.201 20 H -0.186 1.186 21 H -0.218 1.218 22 C -0.040 4.040 23 C -0.119 4.119 24 C -0.145 4.145 25 C -0.168 4.168 26 C -0.142 4.142 27 C -0.157 4.157 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.224 0.776 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.226 0.774 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.071 0.929 45 H 0.138 0.862 46 H 0.128 0.872 47 H 0.126 0.874 48 H 0.126 0.874 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.275 5.759 -13.044 18.815 hybrid contribution -0.718 -0.095 0.057 0.726 sum -12.992 5.664 -12.988 19.224 Atomic orbital electron populations 1.21963 0.94151 1.02359 1.01800 1.20722 0.96118 0.96117 0.94323 1.21967 1.01776 0.94827 1.01777 1.21463 1.01927 0.99812 0.91433 1.22344 0.97472 0.95237 0.85367 1.86490 1.77738 1.57675 1.16274 1.21192 0.99282 0.95661 0.82944 1.46166 1.55721 1.32728 1.05610 1.20811 0.80258 0.85155 0.83939 1.90745 1.34853 1.25559 1.86090 1.21611 0.99451 1.00705 0.93762 1.18238 0.97050 0.95620 0.86200 0.92863 1.20592 0.87258 1.09600 1.34410 0.91085 1.24863 0.94536 0.97650 0.94795 1.69885 1.06433 1.34679 1.42732 0.86961 0.80015 0.84118 0.79365 1.20066 1.18593 1.21826 1.20785 0.91492 0.93422 0.98269 1.20951 0.98592 0.95280 0.97081 1.21057 0.98467 0.99262 0.95673 1.20858 1.01297 0.94699 0.99937 1.20955 1.00663 0.95222 0.97407 1.21060 0.99128 0.99499 0.96036 0.92214 0.92451 0.92229 0.92034 0.92486 0.92157 0.90750 0.90878 0.93426 0.93337 0.77594 0.91599 0.91920 0.77404 0.91373 0.89827 0.92852 0.86242 0.87172 0.87408 0.87357 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 7.95 37.16 0.30 -0.88 16 2 C -0.07 -0.68 0.56 -154.51 -0.09 -0.76 16 3 C -0.15 -1.26 7.95 37.16 0.30 -0.97 16 4 C -0.11 -1.03 4.64 -26.73 -0.12 -1.16 16 5 C 0.07 0.58 6.34 37.15 0.24 0.81 16 6 O -0.58 -5.14 13.66 -35.23 -0.48 -5.62 16 7 C 0.13 1.77 4.56 -4.04 -0.02 1.75 16 8 N -0.75 -10.58 4.96 -60.29 -0.30 -10.88 16 9 C 0.51 9.92 7.58 -10.99 -0.08 9.83 16 10 O -0.50 -12.37 14.98 5.56 0.08 -12.28 16 11 C -0.12 -2.12 4.93 -27.88 -0.14 -2.26 16 12 C 0.05 1.11 1.21 -92.92 -0.11 0.99 16 13 H 0.05 1.33 4.87 -51.93 -0.25 1.07 16 14 C -0.48 -13.35 6.97 -34.44 -0.24 -13.59 16 15 H 0.07 2.13 8.06 -52.49 -0.42 1.70 16 16 C 0.08 2.49 5.47 -17.82 -0.10 2.39 16 17 N -0.90 -28.36 13.96 55.43 0.77 -27.59 16 18 Si 0.87 22.99 26.62 -169.99 -4.52 18.46 16 19 H -0.27 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.26 -6.76 6.29 56.52 0.36 -6.41 16 21 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 22 C -0.04 -0.82 4.52 -104.62 -0.47 -1.30 16 23 C -0.10 -1.97 8.86 -39.58 -0.35 -2.32 16 24 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.15 -2.46 10.05 -39.58 -0.40 -2.86 16 26 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 27 C -0.14 -2.77 9.08 -39.58 -0.36 -3.13 16 28 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 29 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.40 6.43 -51.93 -0.33 0.07 16 33 H 0.06 0.51 6.86 -51.93 -0.36 0.16 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.32 6.43 -51.93 -0.33 -0.01 16 37 H 0.05 0.34 6.43 -51.93 -0.33 0.00 16 38 H 0.38 1.57 9.12 45.56 0.42 1.98 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.39 4.32 6.16 -40.82 -0.25 4.07 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 44 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 45 H 0.12 2.29 7.72 -52.49 -0.40 1.88 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 48 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 49 H 0.11 2.10 7.91 -52.49 -0.42 1.69 16 LS Contribution 385.88 15.07 5.82 5.82 Total: -1.00 -35.59 385.88 -8.27 -43.86 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -7.19 Total: 6.82 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -2.45 Total: -18.58 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.47 Total: -38.47 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.40 Total: -17.90 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.52 Total: 18.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.59 -8.27 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356389925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.258 kcal (2) G-P(sol) polarization free energy of solvation -35.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds