Wall clock time and date at job start Tue Mar 31 2020 13:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46824 * 2 1 4 4 C 1.52999 * 109.46893 * 240.00257 * 2 1 3 5 5 C 1.52993 * 109.47399 * 59.99950 * 4 2 1 6 6 O 1.42901 * 109.47157 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47139 * 120.00047 * 2 1 3 8 8 N 1.46505 * 109.47066 * 299.99588 * 7 2 1 9 9 C 1.34777 * 119.99960 * 179.97438 * 8 7 2 10 10 O 1.21282 * 119.99737 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00194 * 180.02562 * 9 8 7 12 12 C 1.52999 * 109.47010 * 180.02562 * 11 9 8 13 13 H 1.08995 * 109.47465 * 305.00010 * 12 11 9 14 14 C 1.50698 * 109.47080 * 65.00685 * 12 11 9 15 15 H 1.08002 * 120.00223 * 26.94016 * 14 12 11 16 16 C 1.37886 * 120.00006 * 206.93845 * 14 12 11 17 17 N 1.31507 * 120.00030 * 186.61954 * 16 14 12 18 18 Si 1.86801 * 119.99698 * 6.90022 * 16 14 12 19 19 H 1.48503 * 109.46742 * 274.25466 * 18 16 14 20 20 H 1.48500 * 109.47460 * 34.25082 * 18 16 14 21 21 H 1.48499 * 109.46928 * 154.25467 * 18 16 14 22 22 C 1.50706 * 109.46940 * 184.99987 * 12 11 9 23 23 C 1.38233 * 119.99857 * 297.92917 * 22 12 11 24 24 C 1.38240 * 119.99757 * 179.78388 * 23 22 12 25 25 C 1.38239 * 119.99979 * 0.44453 * 24 23 22 26 26 C 1.38242 * 120.00017 * 359.80708 * 25 24 23 27 27 C 1.38230 * 119.99928 * 118.19592 * 22 12 11 28 28 H 1.09007 * 109.47380 * 299.99965 * 1 2 3 29 29 H 1.09000 * 109.47726 * 60.00119 * 1 2 3 30 30 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46965 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46657 * 299.99652 * 3 2 1 33 33 H 1.08994 * 109.47169 * 60.00125 * 3 2 1 34 34 H 1.09000 * 109.46973 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46929 * 299.99652 * 4 2 1 36 36 H 1.09000 * 109.46918 * 299.99863 * 5 4 2 37 37 H 1.09000 * 109.47323 * 59.99944 * 5 4 2 38 38 H 0.96706 * 113.99901 * 179.97438 * 6 5 4 39 39 H 1.09000 * 109.46918 * 180.02562 * 7 2 1 40 40 H 1.09000 * 109.47323 * 59.99956 * 7 2 1 41 41 H 0.96995 * 120.00055 * 0.02562 * 8 7 2 42 42 H 1.09000 * 109.46914 * 60.00574 * 11 9 8 43 43 H 1.09000 * 109.47087 * 300.00639 * 11 9 8 44 44 H 0.96994 * 119.99996 * 180.27656 * 17 16 14 45 45 H 1.07994 * 120.00554 * 359.97438 * 23 22 12 46 46 H 1.07996 * 120.00426 * 180.26872 * 24 23 22 47 47 H 1.08000 * 120.00114 * 179.82966 * 25 24 23 48 48 H 1.07993 * 120.00100 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.00162 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5299 0.0000 -2.4985 6 8 2.0058 -0.6740 -3.6653 7 6 2.0400 -0.7212 1.2492 8 7 1.5517 -0.0305 2.4454 9 6 1.8769 -0.4913 3.6695 10 8 2.5741 -1.4774 3.7807 11 6 1.3742 0.2188 4.9000 12 6 1.8843 -0.5024 6.1492 13 1 1.5964 -1.5528 6.1054 14 6 3.3861 -0.3954 6.2129 15 1 3.8882 0.4401 5.7479 16 6 4.1193 -1.3643 6.8649 17 7 5.4139 -1.2066 7.0340 18 14 3.2749 -2.9044 7.5009 19 1 2.7175 -2.6411 8.8519 20 1 2.1757 -3.2837 6.5773 21 1 4.2603 -4.0126 7.5792 22 6 1.2830 0.1325 7.3766 23 6 1.5466 1.4577 7.6687 24 6 0.9914 2.0414 8.7921 25 6 0.1802 1.2973 9.6284 26 6 -0.0791 -0.0294 9.3390 27 6 0.4725 -0.6117 8.2132 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1299 -0.7208 -1.2495 35 1 1.6766 -1.7489 -1.2493 36 1 0.4399 0.0000 -2.4984 37 1 1.8932 1.0277 -2.4985 38 1 1.7200 -0.2706 -4.4965 39 1 3.1300 -0.7208 1.2494 40 1 1.6766 -1.7489 1.2492 41 1 0.9938 0.7579 2.3564 42 1 0.2842 0.2187 4.8997 43 1 1.7374 1.2465 4.9003 44 1 5.9303 -1.8899 7.4891 45 1 2.1836 2.0379 7.0177 46 1 1.1937 3.0779 9.0181 47 1 -0.2513 1.7526 10.5076 48 1 -0.7132 -0.6105 9.9920 49 1 0.2698 -1.6481 7.9870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356389925.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:15 Heat of formation + Delta-G solvation = -106.718294 kcal Electronic energy + Delta-G solvation = -27037.396185 eV Core-core repulsion = 23348.537334 eV Total energy + Delta-G solvation = -3688.858851 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95373 -40.00690 -39.16397 -37.26970 -35.86595 -34.53639 -33.70446 -31.61056 -30.68450 -29.74599 -28.39771 -28.21017 -27.03119 -24.47750 -23.61045 -23.21729 -21.66038 -20.86379 -19.71366 -19.03958 -18.51076 -17.87318 -17.22759 -16.88300 -16.55446 -16.37770 -16.17332 -15.82648 -15.41306 -15.21239 -15.08010 -14.79954 -14.52523 -14.38326 -14.14267 -13.98024 -13.90631 -13.73905 -13.40585 -13.30520 -12.89391 -12.77277 -12.67745 -12.54285 -12.53020 -12.10677 -11.89897 -11.81530 -11.76751 -11.75227 -11.48630 -11.38261 -11.04434 -10.73634 -10.71500 -10.53877 -9.92694 -9.62571 -9.30825 -8.23982 -6.18845 0.67707 0.73106 1.27409 1.32095 1.40153 1.94523 2.36275 2.38095 3.07065 3.21453 3.34860 3.65486 3.77500 4.05658 4.11802 4.12232 4.22078 4.30550 4.31198 4.38534 4.43837 4.47617 4.50111 4.59567 4.63450 4.67502 4.76739 4.84224 4.84913 4.87318 4.96984 5.00580 5.04275 5.08841 5.16075 5.16924 5.22454 5.38617 5.40313 5.42178 5.47159 5.62567 5.69594 5.76366 5.81835 6.02522 6.33066 6.35176 6.76904 6.79656 6.94101 7.43248 7.57028 8.93475 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015852 B = 0.003102 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.861659 B = 9025.695051 C = 9996.521789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.146 4.146 4 C -0.110 4.110 5 C 0.076 3.924 6 O -0.601 6.601 7 C 0.132 3.868 8 N -0.720 5.720 9 C 0.507 3.493 10 O -0.565 6.565 11 C -0.111 4.111 12 C 0.050 3.950 13 H 0.032 0.968 14 C -0.459 4.459 15 H 0.035 0.965 16 C 0.022 3.978 17 N -0.953 5.953 18 Si 0.918 3.082 19 H -0.259 1.259 20 H -0.257 1.257 21 H -0.299 1.299 22 C -0.063 4.063 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.124 4.124 27 C -0.158 4.158 28 H 0.065 0.935 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.039 0.961 40 H 0.049 0.951 41 H 0.412 0.588 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.258 0.742 45 H 0.112 0.888 46 H 0.141 0.859 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.966 9.046 -13.451 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.059 4.059 3 C -0.204 4.204 4 C -0.148 4.148 5 C -0.001 4.001 6 O -0.410 6.410 7 C 0.008 3.992 8 N -0.376 5.376 9 C 0.295 3.705 10 O -0.442 6.442 11 C -0.151 4.151 12 C 0.030 3.970 13 H 0.050 0.950 14 C -0.497 4.497 15 H 0.053 0.947 16 C -0.174 4.174 17 N -0.595 5.595 18 Si 0.745 3.255 19 H -0.184 1.184 20 H -0.182 1.182 21 H -0.226 1.226 22 C -0.064 4.064 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.176 4.176 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.250 0.750 42 H 0.125 0.875 43 H 0.116 0.884 44 H 0.067 0.933 45 H 0.130 0.870 46 H 0.159 0.841 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.045 7.870 -12.860 22.017 hybrid contribution 0.355 -0.609 -0.077 0.710 sum -15.690 7.261 -12.937 21.593 Atomic orbital electron populations 1.21971 0.92352 1.02485 1.03305 1.20596 0.97342 0.96062 0.91902 1.21987 1.00919 0.94195 1.03250 1.21451 1.00896 0.99696 0.92805 1.22329 0.98381 0.95227 0.84126 1.86436 1.78304 1.58644 1.17599 1.21264 0.97823 0.95796 0.84367 1.45889 1.54540 1.32712 1.04478 1.21087 0.79459 0.84390 0.85587 1.90723 1.37955 1.28424 1.87120 1.21560 1.01674 1.00456 0.91379 1.18095 0.93934 0.95408 0.89533 0.94951 1.20829 0.90110 1.07289 1.31477 0.94684 1.25575 0.95012 1.00624 0.96229 1.70025 1.07986 1.35813 1.45664 0.86143 0.78940 0.80872 0.79540 1.18432 1.18211 1.22584 1.20504 0.93669 0.94488 0.97715 1.21019 0.99284 0.94831 0.98455 1.21416 0.97464 1.00820 0.94434 1.21344 0.99811 0.94177 1.00460 1.21331 1.00200 0.96058 0.96615 1.21192 0.99880 0.99493 0.97021 0.91624 0.90024 0.92850 0.93535 0.89908 0.91767 0.92537 0.91987 0.91601 0.91970 0.75245 0.94289 0.93213 0.75048 0.87526 0.88437 0.93264 0.86968 0.84116 0.83503 0.84286 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.95 71.98 0.57 -1.39 16 2 C -0.06 -1.04 0.56 -52.18 -0.03 -1.07 16 3 C -0.15 -2.27 7.95 71.98 0.57 -1.70 16 4 C -0.11 -2.07 4.64 30.59 0.14 -1.93 16 5 C 0.08 1.05 6.34 71.98 0.46 1.50 16 6 O -0.60 -9.81 13.66 -148.98 -2.04 -11.85 16 7 C 0.13 3.61 4.56 86.38 0.39 4.01 16 8 N -0.72 -20.31 4.96 -463.06 -2.30 -22.60 16 9 C 0.51 20.07 7.58 87.66 0.66 20.73 16 10 O -0.57 -29.36 14.98 -3.03 -0.05 -29.41 16 11 C -0.11 -4.05 4.93 29.85 0.15 -3.90 16 12 C 0.05 2.31 1.21 -12.29 -0.01 2.29 16 13 H 0.03 1.64 4.87 -2.39 -0.01 1.63 16 14 C -0.46 -26.54 6.97 25.60 0.18 -26.36 16 15 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 16 C 0.02 1.34 5.47 84.66 0.46 1.80 16 17 N -0.95 -63.20 13.96 21.45 0.30 -62.90 16 18 Si 0.92 49.13 26.62 68.60 1.83 50.95 16 19 H -0.26 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.26 -13.43 6.29 99.48 0.63 -12.81 16 21 H -0.30 -16.11 7.11 99.48 0.71 -15.40 16 22 C -0.06 -2.62 4.52 -19.87 -0.09 -2.71 16 23 C -0.12 -4.44 8.86 22.27 0.20 -4.24 16 24 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 25 C -0.14 -3.95 10.05 22.27 0.22 -3.73 16 26 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 27 C -0.16 -5.99 9.08 22.27 0.20 -5.79 16 28 H 0.06 0.82 6.86 -2.38 -0.02 0.81 16 29 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 30 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 33 H 0.06 0.94 6.86 -2.39 -0.02 0.93 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 0.67 6.43 -2.39 -0.02 0.65 16 37 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 38 H 0.40 2.51 9.12 -74.05 -0.68 1.84 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.41 8.32 6.16 -92.71 -0.57 7.75 16 42 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 43 H 0.10 3.28 7.69 -2.39 -0.02 3.26 16 44 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 45 H 0.11 4.27 7.72 -2.91 -0.02 4.25 16 46 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 47 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 49 H 0.10 3.95 7.91 -2.91 -0.02 3.93 16 Total: -1.00 -83.08 385.88 1.90 -81.18 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: -0.38 Total: 24.31 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.53 Total: -29.68 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.00 Total: -85.50 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -2.08 Total: -41.25 kcal Atomic # 14 Polarization: 49.13 SS G_CDS: 1.83 Total: 50.95 kcal Total: -83.08 1.90 -81.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356389925.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.541 kcal (2) G-P(sol) polarization free energy of solvation -83.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds