Wall clock time and date at job start Tue Mar 31 2020 12:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46760 * 2 1 4 4 C 1.52997 * 109.46653 * 240.00232 * 2 1 3 5 5 C 1.53002 * 109.46887 * 185.00029 * 4 2 1 6 6 H 1.09007 * 109.47125 * 304.99685 * 5 4 2 7 7 C 1.53002 * 109.47163 * 185.00104 * 5 4 2 8 8 O 1.42894 * 109.47015 * 304.99836 * 7 5 4 9 9 N 1.46495 * 109.47211 * 65.00001 * 5 4 2 10 10 C 1.34784 * 119.99961 * 205.00029 * 9 5 4 11 11 O 1.21287 * 119.99772 * 0.02562 * 10 9 5 12 12 C 1.50698 * 119.99857 * 179.97438 * 10 9 5 13 13 C 1.52996 * 109.46827 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47506 * 55.00772 * 13 12 10 15 15 C 1.50703 * 109.47500 * 295.00161 * 13 12 10 16 16 H 1.08002 * 119.99918 * 325.85286 * 15 13 12 17 17 C 1.37881 * 119.99746 * 145.84755 * 15 13 12 18 18 N 1.31507 * 120.00077 * 6.12234 * 17 15 13 19 19 Si 1.86803 * 119.99766 * 186.12236 * 17 15 13 20 20 H 1.48506 * 109.46830 * 60.00157 * 19 17 15 21 21 H 1.48503 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46958 * 300.00077 * 19 17 15 23 23 C 1.50706 * 109.47115 * 175.00372 * 13 12 10 24 24 C 1.38234 * 119.99590 * 63.46796 * 23 13 12 25 25 C 1.38239 * 119.99658 * 179.78994 * 24 23 13 26 26 C 1.38236 * 119.99993 * 0.43949 * 25 24 23 27 27 C 1.38230 * 119.99830 * 359.81161 * 26 25 24 28 28 C 1.38231 * 120.00354 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47466 * 59.99563 * 1 2 3 30 30 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99840 * 1 2 3 32 32 H 1.08995 * 109.46940 * 120.00426 * 2 1 3 33 33 H 1.09001 * 109.46674 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47742 * 299.99935 * 3 2 1 35 35 H 1.08997 * 109.47476 * 60.00423 * 3 2 1 36 36 H 1.09004 * 109.47526 * 304.99791 * 4 2 1 37 37 H 1.08997 * 109.47420 * 65.00196 * 4 2 1 38 38 H 1.09005 * 109.47174 * 65.00203 * 7 5 4 39 39 H 1.09003 * 109.46812 * 184.99398 * 7 5 4 40 40 H 0.96705 * 113.99839 * 179.97438 * 8 7 5 41 41 H 0.96995 * 119.99848 * 24.99900 * 9 5 4 42 42 H 1.08996 * 109.47312 * 300.00549 * 12 10 9 43 43 H 1.09003 * 109.46477 * 60.00843 * 12 10 9 44 44 H 0.97011 * 119.99971 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.00305 * 359.97438 * 24 23 13 46 46 H 1.08001 * 120.00018 * 180.27052 * 25 24 23 47 47 H 1.07995 * 119.99755 * 179.83387 * 26 25 24 48 48 H 1.08002 * 120.00233 * 180.02562 * 27 26 25 49 49 H 1.08003 * 120.00359 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1881 6 1 3.9954 0.1612 -1.0528 7 6 4.0851 -1.4393 -2.4920 8 8 3.4329 -2.6886 -2.7283 9 7 3.9479 -1.6872 -0.0628 10 6 5.1613 -1.5479 0.5074 11 8 5.9356 -0.7134 0.0891 12 6 5.5551 -2.4283 1.6653 13 6 6.9699 -2.0671 2.1223 14 1 7.0174 -1.0023 2.3502 15 6 7.9503 -2.3901 1.0243 16 1 7.7806 -3.2417 0.3821 17 6 9.0639 -1.5983 0.8396 18 7 9.3350 -0.6354 1.6932 19 14 10.1875 -1.8935 -0.6233 20 1 9.4162 -1.7270 -1.8813 21 1 11.3044 -0.9152 -0.5949 22 1 10.7347 -3.2724 -0.5568 23 6 7.3174 -2.8607 3.3555 24 6 7.3940 -4.2394 3.2912 25 6 7.7171 -4.9670 4.4214 26 6 7.9546 -4.3165 5.6177 27 6 7.8729 -2.9382 5.6831 28 6 7.5542 -2.2103 4.5520 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -1.7198 -1.2952 37 1 1.7516 -0.1583 -2.1370 38 1 3.8779 -0.7592 -3.3183 39 1 5.1604 -1.5997 -2.4144 40 1 3.7143 -3.1318 -3.5405 41 1 3.3284 -2.3543 0.2720 42 1 4.8580 -2.2780 2.4896 43 1 5.5292 -3.4723 1.3531 44 1 10.1183 -0.0781 1.5630 45 1 7.2044 -4.7479 2.3575 46 1 7.7812 -6.0439 4.3702 47 1 8.2044 -4.8852 6.5012 48 1 8.0589 -2.4299 6.6177 49 1 7.4900 -1.1334 4.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356571090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:55 Heat of formation + Delta-G solvation = -87.614936 kcal Electronic energy + Delta-G solvation = -27621.523919 eV Core-core repulsion = 23933.493451 eV Total energy + Delta-G solvation = -3688.030467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.42991 -38.33273 -37.22665 -36.02556 -34.03257 -33.38605 -31.44833 -30.09017 -29.95604 -28.40966 -27.20610 -26.05668 -25.42854 -22.88541 -21.64075 -21.25950 -20.21516 -19.69264 -19.18516 -17.36872 -16.56064 -16.24487 -15.81645 -15.53898 -14.95556 -14.83052 -14.49032 -14.16169 -14.10545 -13.88732 -13.63034 -13.59314 -12.97973 -12.56851 -12.47088 -12.36914 -12.23416 -12.17472 -12.01188 -11.82216 -11.58075 -11.53288 -11.46400 -10.83689 -10.69503 -10.66098 -10.58979 -10.55524 -10.49352 -10.22223 -10.01788 -9.87257 -9.40389 -9.01705 -8.79147 -8.42520 -8.28740 -8.00674 -7.56413 -5.89849 -3.88734 2.32706 2.38745 3.39905 3.43595 3.46914 3.62617 3.79877 4.42560 4.54482 4.66495 4.79330 4.88091 4.90181 5.29591 5.38206 5.44440 5.49452 5.50976 5.58408 5.68256 5.69462 5.73223 5.76815 5.81757 5.87258 5.88197 5.95001 5.98270 6.12866 6.16358 6.20002 6.27793 6.33471 6.35719 6.43168 6.45281 6.58778 6.86427 6.95752 7.07582 7.09435 7.34713 7.49099 7.57648 7.67592 7.89472 7.99150 8.09494 8.23907 8.43465 9.10625 9.19358 9.72639 11.20407 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.004211 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.189588 B = 6648.095280 C = 7973.842054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.114 4.114 5 C 0.150 3.850 6 H 0.098 0.902 7 C 0.061 3.939 8 O -0.569 6.569 9 N -0.736 5.736 10 C 0.513 3.487 11 O -0.501 6.501 12 C -0.123 4.123 13 C 0.081 3.919 14 H 0.071 0.929 15 C -0.490 4.490 16 H 0.049 0.951 17 C 0.079 3.921 18 N -0.882 5.882 19 Si 0.885 3.115 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.280 1.280 23 C -0.020 4.020 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.373 0.627 41 H 0.393 0.607 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.259 0.741 45 H 0.112 0.888 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.105 0.895 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.049 -1.864 -2.550 15.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.152 4.152 5 C 0.044 3.956 6 H 0.116 0.884 7 C -0.018 4.018 8 O -0.374 6.374 9 N -0.391 5.391 10 C 0.300 3.700 11 O -0.372 6.372 12 C -0.163 4.163 13 C 0.062 3.938 14 H 0.090 0.910 15 C -0.527 4.527 16 H 0.067 0.933 17 C -0.124 4.124 18 N -0.519 5.519 19 Si 0.714 3.286 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.206 1.206 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.175 4.175 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.219 0.781 41 H 0.226 0.774 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.123 0.877 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.594 -0.901 -2.249 14.794 hybrid contribution 0.922 -0.638 -1.271 1.695 sum -13.673 -1.540 -3.520 14.202 Atomic orbital electron populations 1.21833 0.95510 1.01485 1.01440 1.21131 0.95232 0.96559 0.98786 1.21901 1.01800 0.95805 1.01303 1.21802 0.94179 1.01310 0.97891 1.20953 0.94580 0.95023 0.85002 0.88400 1.22721 0.97014 0.85114 0.96985 1.86437 1.67884 1.35868 1.47198 1.46157 1.17947 1.39975 1.34983 1.20892 0.80211 0.84578 0.84306 1.90745 1.49315 1.34525 1.62657 1.21784 1.00806 0.98872 0.94827 1.17822 0.88677 0.97277 0.90028 0.91048 1.20629 1.06619 1.12025 1.13437 0.93325 1.24790 0.97396 0.94785 0.95423 1.69902 1.26946 1.19772 1.35268 0.86779 0.80202 0.77608 0.84027 1.20436 1.21470 1.20571 1.20750 0.92792 0.93570 0.94956 1.20946 1.00801 0.94403 0.97187 1.20972 1.01727 0.98701 0.93605 1.20785 1.04734 0.94581 0.97353 1.20976 1.01501 0.94112 0.98051 1.21083 1.00690 0.99542 0.92394 0.92973 0.92821 0.92893 0.90785 0.92013 0.92996 0.92919 0.90758 0.91258 0.93712 0.92568 0.78057 0.77354 0.91817 0.90648 0.93148 0.86952 0.87716 0.87850 0.87688 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 2 C -0.10 -1.03 2.86 -90.62 -0.26 -1.28 16 3 C -0.15 -1.64 8.95 37.16 0.33 -1.31 16 4 C -0.11 -1.23 3.94 -26.73 -0.11 -1.34 16 5 C 0.15 2.06 2.23 -67.93 -0.15 1.91 16 6 H 0.10 1.52 5.78 -51.92 -0.30 1.22 16 7 C 0.06 0.82 6.85 37.16 0.25 1.08 16 8 O -0.57 -6.99 12.83 -35.23 -0.45 -7.44 16 9 N -0.74 -11.15 4.39 -53.80 -0.24 -11.39 16 10 C 0.51 10.17 7.54 -10.98 -0.08 10.09 16 11 O -0.50 -12.28 14.65 5.55 0.08 -12.20 16 12 C -0.12 -2.39 4.95 -27.89 -0.14 -2.53 16 13 C 0.08 1.94 1.67 -92.92 -0.16 1.79 16 14 H 0.07 1.97 6.98 -51.93 -0.36 1.60 16 15 C -0.49 -13.19 6.37 -34.44 -0.22 -13.41 16 16 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 17 C 0.08 2.24 5.45 -17.82 -0.10 2.15 16 18 N -0.88 -26.02 12.87 55.43 0.71 -25.30 16 19 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 24 C -0.12 -2.36 8.86 -39.58 -0.35 -2.71 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.80 16 26 C -0.16 -2.77 10.05 -39.59 -0.40 -3.16 16 27 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 28 C -0.12 -2.54 9.67 -39.59 -0.38 -2.92 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.84 7.62 -51.93 -0.40 0.45 16 33 H 0.06 0.79 6.46 -51.93 -0.34 0.46 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.82 7.73 -51.93 -0.40 0.42 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.37 3.14 9.12 45.56 0.42 3.56 16 41 H 0.39 5.11 8.60 -40.82 -0.35 4.75 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.08 1.39 7.78 -51.93 -0.40 0.98 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.11 2.23 7.76 -52.49 -0.41 1.82 16 46 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 47 H 0.10 1.53 8.06 -52.49 -0.42 1.10 16 48 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 49 H 0.11 2.44 7.95 -52.48 -0.42 2.02 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -32.39 398.41 -9.20 -41.58 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -7.58 Total: 10.58 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.71 Total: -19.14 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.48 Total: -36.69 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.37 Total: -19.64 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.39 -9.20 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356571090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.032 kcal (2) G-P(sol) polarization free energy of solvation -32.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds