Wall clock time and date at job start Tue Mar 31 2020 12:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46760 * 2 1 4 4 C 1.52997 * 109.46653 * 240.00232 * 2 1 3 5 5 C 1.53002 * 109.46887 * 185.00029 * 4 2 1 6 6 H 1.09007 * 109.47125 * 304.99685 * 5 4 2 7 7 C 1.53002 * 109.47163 * 185.00104 * 5 4 2 8 8 O 1.42894 * 109.47015 * 304.99836 * 7 5 4 9 9 N 1.46495 * 109.47211 * 65.00001 * 5 4 2 10 10 C 1.34784 * 119.99961 * 205.00029 * 9 5 4 11 11 O 1.21287 * 119.99772 * 0.02562 * 10 9 5 12 12 C 1.50698 * 119.99857 * 179.97438 * 10 9 5 13 13 C 1.52996 * 109.46827 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47506 * 55.00772 * 13 12 10 15 15 C 1.50703 * 109.47500 * 295.00161 * 13 12 10 16 16 H 1.08002 * 119.99918 * 325.85286 * 15 13 12 17 17 C 1.37881 * 119.99746 * 145.84755 * 15 13 12 18 18 N 1.31507 * 120.00077 * 6.12234 * 17 15 13 19 19 Si 1.86803 * 119.99766 * 186.12236 * 17 15 13 20 20 H 1.48506 * 109.46830 * 60.00157 * 19 17 15 21 21 H 1.48503 * 109.47079 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46958 * 300.00077 * 19 17 15 23 23 C 1.50706 * 109.47115 * 175.00372 * 13 12 10 24 24 C 1.38234 * 119.99590 * 63.46796 * 23 13 12 25 25 C 1.38239 * 119.99658 * 179.78994 * 24 23 13 26 26 C 1.38236 * 119.99993 * 0.43949 * 25 24 23 27 27 C 1.38230 * 119.99830 * 359.81161 * 26 25 24 28 28 C 1.38231 * 120.00354 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47466 * 59.99563 * 1 2 3 30 30 H 1.09006 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47212 * 299.99840 * 1 2 3 32 32 H 1.08995 * 109.46940 * 120.00426 * 2 1 3 33 33 H 1.09001 * 109.46674 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47742 * 299.99935 * 3 2 1 35 35 H 1.08997 * 109.47476 * 60.00423 * 3 2 1 36 36 H 1.09004 * 109.47526 * 304.99791 * 4 2 1 37 37 H 1.08997 * 109.47420 * 65.00196 * 4 2 1 38 38 H 1.09005 * 109.47174 * 65.00203 * 7 5 4 39 39 H 1.09003 * 109.46812 * 184.99398 * 7 5 4 40 40 H 0.96705 * 113.99839 * 179.97438 * 8 7 5 41 41 H 0.96995 * 119.99848 * 24.99900 * 9 5 4 42 42 H 1.08996 * 109.47312 * 300.00549 * 12 10 9 43 43 H 1.09003 * 109.46477 * 60.00843 * 12 10 9 44 44 H 0.97011 * 119.99971 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.00305 * 359.97438 * 24 23 13 46 46 H 1.08001 * 120.00018 * 180.27052 * 25 24 23 47 47 H 1.07995 * 119.99755 * 179.83387 * 26 25 24 48 48 H 1.08002 * 120.00233 * 180.02562 * 27 26 25 49 49 H 1.08003 * 120.00359 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8310 -1.1881 6 1 3.9954 0.1612 -1.0528 7 6 4.0851 -1.4393 -2.4920 8 8 3.4329 -2.6886 -2.7283 9 7 3.9479 -1.6872 -0.0628 10 6 5.1613 -1.5479 0.5074 11 8 5.9356 -0.7134 0.0891 12 6 5.5551 -2.4283 1.6653 13 6 6.9699 -2.0671 2.1223 14 1 7.0174 -1.0023 2.3502 15 6 7.9503 -2.3901 1.0243 16 1 7.7806 -3.2417 0.3821 17 6 9.0639 -1.5983 0.8396 18 7 9.3350 -0.6354 1.6932 19 14 10.1875 -1.8935 -0.6233 20 1 9.4162 -1.7270 -1.8813 21 1 11.3044 -0.9152 -0.5949 22 1 10.7347 -3.2724 -0.5568 23 6 7.3174 -2.8607 3.3555 24 6 7.3940 -4.2394 3.2912 25 6 7.7171 -4.9670 4.4214 26 6 7.9546 -4.3165 5.6177 27 6 7.8729 -2.9382 5.6831 28 6 7.5542 -2.2103 4.5520 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6053 -1.7198 -1.2952 37 1 1.7516 -0.1583 -2.1370 38 1 3.8779 -0.7592 -3.3183 39 1 5.1604 -1.5997 -2.4144 40 1 3.7143 -3.1318 -3.5405 41 1 3.3284 -2.3543 0.2720 42 1 4.8580 -2.2780 2.4896 43 1 5.5292 -3.4723 1.3531 44 1 10.1183 -0.0781 1.5630 45 1 7.2044 -4.7479 2.3575 46 1 7.7812 -6.0439 4.3702 47 1 8.2044 -4.8852 6.5012 48 1 8.0589 -2.4299 6.6177 49 1 7.4900 -1.1334 4.6032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356571090.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:54 Heat of formation + Delta-G solvation = -108.479747 kcal Electronic energy + Delta-G solvation = -27622.428685 eV Core-core repulsion = 23933.493451 eV Total energy + Delta-G solvation = -3688.935233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.87679 -39.83162 -38.51170 -36.96613 -35.78930 -34.73569 -33.40469 -31.50604 -31.35448 -29.89463 -28.01462 -27.37499 -27.01120 -24.60693 -23.15775 -22.47817 -21.55290 -20.85301 -20.72053 -18.54546 -18.41101 -17.84214 -17.17072 -16.92661 -16.44846 -16.12487 -15.88554 -15.62898 -15.47566 -15.30632 -15.04557 -14.57430 -14.45740 -14.18249 -13.96521 -13.64853 -13.59316 -13.36255 -13.21649 -13.02969 -12.97054 -12.90257 -12.79734 -12.52994 -12.45829 -12.39201 -11.82235 -11.67974 -11.53815 -11.48910 -11.46044 -11.30081 -10.96194 -10.93194 -10.58414 -10.28859 -9.80822 -9.53436 -9.17788 -8.03236 -6.05222 0.78668 0.85318 1.34421 1.38737 1.42972 2.04190 2.46134 2.46548 3.19659 3.37206 3.42806 3.70992 3.97439 4.05297 4.22183 4.26596 4.30766 4.36698 4.38560 4.42813 4.50003 4.56364 4.61261 4.66383 4.74695 4.78225 4.83322 4.85746 4.93034 4.95277 5.01139 5.03259 5.12768 5.18842 5.26737 5.37865 5.39138 5.48066 5.53419 5.54309 5.64761 5.77385 5.80576 5.84511 5.96707 6.18866 6.43402 6.47848 6.84660 6.87132 7.01984 7.57074 7.67784 9.06425 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010833 B = 0.004211 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.189588 B = 6648.095280 C = 7973.842054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.150 4.150 4 C -0.100 4.100 5 C 0.144 3.856 6 H 0.076 0.924 7 C 0.068 3.932 8 O -0.572 6.572 9 N -0.715 5.715 10 C 0.512 3.488 11 O -0.557 6.557 12 C -0.117 4.117 13 C 0.085 3.915 14 H 0.023 0.977 15 C -0.482 4.482 16 H 0.044 0.956 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.934 3.066 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.267 1.267 23 C -0.045 4.045 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.128 4.128 28 C -0.143 4.143 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.017 0.983 40 H 0.392 0.608 41 H 0.407 0.593 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.253 0.747 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.144 0.856 48 H 0.132 0.868 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.854 -4.315 -2.224 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.207 4.207 4 C -0.138 4.138 5 C 0.039 3.961 6 H 0.094 0.906 7 C -0.011 4.011 8 O -0.380 6.380 9 N -0.369 5.369 10 C 0.300 3.700 11 O -0.434 6.434 12 C -0.157 4.157 13 C 0.066 3.934 14 H 0.042 0.958 15 C -0.520 4.520 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.557 5.557 19 Si 0.761 3.239 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.193 1.193 23 C -0.045 4.045 24 C -0.146 4.146 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.146 4.146 28 C -0.162 4.162 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.035 0.965 40 H 0.241 0.759 41 H 0.243 0.757 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.062 0.938 45 H 0.132 0.868 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.150 0.850 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.452 -3.405 -1.943 16.913 hybrid contribution 1.384 0.065 -1.324 1.916 sum -15.069 -3.341 -3.267 15.776 Atomic orbital electron populations 1.21781 0.93624 1.02223 1.02107 1.21119 0.96716 0.95780 0.98018 1.21888 0.99957 0.96672 1.02192 1.21719 0.91287 1.01986 0.98777 1.21105 0.96814 0.93694 0.84490 0.90590 1.22520 0.94675 0.86301 0.97615 1.86384 1.67500 1.35367 1.48715 1.45920 1.16496 1.39815 1.34653 1.20962 0.80965 0.83814 0.84271 1.90727 1.51406 1.36900 1.64347 1.21663 0.98894 0.99483 0.95643 1.17594 0.90546 0.94872 0.90426 0.95825 1.20903 1.06471 1.10989 1.13642 0.93813 1.25457 0.99183 0.95173 0.97584 1.70046 1.27492 1.21164 1.36980 0.86001 0.78683 0.77956 0.81275 1.20909 1.21455 1.19250 1.20576 0.94850 0.94557 0.94540 1.21028 1.01607 0.93553 0.98435 1.21368 0.99853 1.00453 0.92764 1.21257 1.02581 0.94171 0.98583 1.21281 1.00319 0.94996 0.97989 1.21095 1.02461 0.98975 0.93645 0.92037 0.92039 0.92556 0.92046 0.94816 0.91611 0.92569 0.90071 0.89658 0.91230 0.96491 0.75929 0.75680 0.89408 0.89069 0.93808 0.86837 0.84193 0.83848 0.85036 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.19 71.98 0.66 -1.44 16 2 C -0.10 -1.91 2.86 -10.79 -0.03 -1.94 16 3 C -0.15 -3.22 8.95 71.98 0.64 -2.58 16 4 C -0.10 -1.99 3.94 30.59 0.12 -1.87 16 5 C 0.14 3.97 2.23 44.99 0.10 4.07 16 6 H 0.08 2.48 5.78 -2.38 -0.01 2.47 16 7 C 0.07 1.82 6.85 71.98 0.49 2.31 16 8 O -0.57 -13.02 12.83 -148.98 -1.91 -14.93 16 9 N -0.71 -21.79 4.39 -442.51 -1.94 -23.73 16 10 C 0.51 21.10 7.54 87.66 0.66 21.76 16 11 O -0.56 -29.13 14.65 -3.05 -0.04 -29.18 16 12 C -0.12 -4.66 4.95 29.85 0.15 -4.51 16 13 C 0.08 4.26 1.67 -12.28 -0.02 4.23 16 14 H 0.02 1.39 6.98 -2.39 -0.02 1.38 16 15 C -0.48 -26.93 6.37 25.60 0.16 -26.77 16 16 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 17 C 0.02 1.45 5.45 84.66 0.46 1.91 16 18 N -0.92 -57.06 12.87 21.45 0.28 -56.78 16 19 Si 0.93 47.24 29.54 68.60 2.03 49.27 16 20 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 22 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 23 C -0.04 -2.03 4.77 -19.86 -0.09 -2.13 16 24 C -0.13 -5.11 8.86 22.27 0.20 -4.91 16 25 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 26 C -0.15 -4.68 10.05 22.27 0.22 -4.46 16 27 C -0.13 -4.56 10.05 22.27 0.22 -4.34 16 28 C -0.14 -6.26 9.67 22.27 0.22 -6.05 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.35 7.62 -2.39 -0.02 1.33 16 33 H 0.03 0.91 6.46 -2.39 -0.02 0.89 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.08 1.56 7.73 -2.38 -0.02 1.54 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.39 5.81 9.12 -74.05 -0.68 5.14 16 41 H 0.41 10.14 8.60 -92.71 -0.80 9.34 16 42 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.09 3.33 7.78 -2.39 -0.02 3.31 16 44 H 0.25 15.27 8.31 -92.70 -0.77 14.50 16 45 H 0.11 4.40 7.76 -2.91 -0.02 4.37 16 46 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 47 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 48 H 0.13 3.90 8.06 -2.91 -0.02 3.88 16 49 H 0.09 4.31 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -74.71 398.41 2.26 -72.45 By element: Atomic # 1 Polarization: 34.12 SS G_CDS: -0.54 Total: 33.59 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: 4.39 Total: -30.68 kcal Atomic # 7 Polarization: -78.85 SS G_CDS: -1.67 Total: -80.52 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -1.96 Total: -44.11 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -74.71 2.26 -72.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356571090.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.027 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds