Wall clock time and date at job start Tue Mar 31 2020 12:36:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46812 * 2 1
4 4 C 1.53000 * 109.46812 * 179.97438 * 3 2 1
5 5 C 1.53001 * 109.47076 * 60.00218 * 4 3 2
6 6 C 1.53000 * 109.47099 * 299.99965 * 4 3 2
7 7 O 1.42899 * 109.47040 * 299.99684 * 6 4 3
8 8 N 1.46502 * 109.46825 * 179.97438 * 4 3 2
9 9 C 1.34778 * 119.99571 * 180.02562 * 8 4 3
10 10 O 1.21283 * 120.00463 * 359.97438 * 9 8 4
11 11 C 1.50706 * 120.00010 * 180.02562 * 9 8 4
12 12 C 1.52995 * 109.47514 * 179.97438 * 11 9 8
13 13 H 1.09008 * 109.46715 * 55.00049 * 12 11 9
14 14 C 1.50694 * 109.47256 * 295.00358 * 12 11 9
15 15 H 1.08007 * 119.99955 * 325.83666 * 14 12 11
16 16 C 1.37879 * 120.00414 * 145.84604 * 14 12 11
17 17 N 1.31515 * 119.99666 * 6.11128 * 16 14 12
18 18 Si 1.86797 * 120.00187 * 186.11960 * 16 14 12
19 19 H 1.48505 * 109.46955 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47202 * 119.99413 * 18 16 14
21 21 H 1.48504 * 109.46880 * 239.99576 * 18 16 14
22 22 C 1.50698 * 109.47280 * 174.99827 * 12 11 9
23 23 C 1.38233 * 119.99930 * 63.47020 * 22 12 11
24 24 C 1.38240 * 119.99920 * 179.78975 * 23 22 12
25 25 C 1.38233 * 119.99789 * 0.44131 * 24 23 22
26 26 C 1.38238 * 120.00486 * 359.81239 * 25 24 23
27 27 C 1.38238 * 119.99565 * 359.97438 * 26 25 24
28 28 H 1.08999 * 109.47441 * 60.00151 * 1 2 3
29 29 H 1.09000 * 109.46671 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47138 * 300.00240 * 1 2 3
31 31 H 1.08998 * 109.46906 * 240.00219 * 2 1 3
32 32 H 1.08999 * 109.47441 * 119.99849 * 2 1 3
33 33 H 1.08994 * 109.47465 * 59.99960 * 3 2 1
34 34 H 1.08998 * 109.47455 * 299.99855 * 3 2 1
35 35 H 1.09000 * 109.47073 * 180.02562 * 5 4 3
36 36 H 1.09000 * 109.47209 * 299.99472 * 5 4 3
37 37 H 1.08998 * 109.47275 * 60.00094 * 5 4 3
38 38 H 1.08997 * 109.46821 * 60.00469 * 6 4 3
39 39 H 1.09006 * 109.46499 * 180.02562 * 6 4 3
40 40 H 0.96701 * 113.99669 * 179.97438 * 7 6 4
41 41 H 0.97001 * 120.00175 * 359.97438 * 8 4 3
42 42 H 1.08999 * 109.46670 * 299.99818 * 11 9 8
43 43 H 1.09003 * 109.46971 * 59.98911 * 11 9 8
44 44 H 0.97003 * 120.00037 * 180.02562 * 17 16 14
45 45 H 1.08002 * 119.99998 * 0.02562 * 23 22 12
46 46 H 1.07994 * 119.99800 * 180.28015 * 24 23 22
47 47 H 1.07997 * 119.99929 * 179.83654 * 25 24 23
48 48 H 1.07989 * 120.00464 * 179.97438 * 26 25 24
49 49 H 1.07998 * 120.00035 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 6 4.0804 0.7212 -1.2483
6 6 4.0794 0.7215 1.2502
7 8 3.6026 1.3954 2.4167
8 7 4.0582 2.8238 0.0000
9 6 5.3833 3.0701 -0.0001
10 8 6.1715 2.1483 0.0008
11 6 5.8857 4.4909 -0.0001
12 6 7.4156 4.4910 0.0004
13 1 7.7792 3.9014 -0.8413
14 6 7.9176 3.8907 1.2882
15 1 7.3676 4.0426 2.2053
16 6 9.0790 3.1477 1.2960
17 7 9.8123 3.0625 0.2076
18 14 9.6108 2.2620 2.8523
19 1 8.6203 2.5158 3.9293
20 1 9.6926 0.8030 2.5882
21 1 10.9425 2.7637 3.2768
22 6 7.9180 5.9064 -0.1235
23 6 7.6439 6.8266 0.8709
24 6 8.1084 8.1238 0.7593
25 6 8.8392 8.5031 -0.3511
26 6 9.1089 7.5842 -1.3481
27 6 8.6481 6.2859 -1.2343
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 1.6766 1.9564 0.8899
34 1 1.6766 1.9564 -0.8900
35 1 5.1705 0.7208 -1.2476
36 1 3.7172 -0.3065 -1.2483
37 1 3.7175 1.2349 -2.1385
38 1 3.7161 -0.3061 1.2501
39 1 5.1695 0.7220 1.2508
40 1 3.8873 0.9917 3.2480
41 1 3.4278 3.5611 -0.0011
42 1 5.5223 5.0047 -0.8901
43 1 5.5223 5.0048 0.8898
44 1 10.6293 2.5394 0.2129
45 1 7.0700 6.5311 1.7368
46 1 7.8981 8.8415 1.5383
47 1 9.1999 9.5172 -0.4395
48 1 9.6795 7.8806 -2.2157
49 1 8.8591 5.5679 -2.0130
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000356669882.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:41
Heat of formation + Delta-G solvation = -79.216933 kcal
Electronic energy + Delta-G solvation = -27896.170886 eV
Core-core repulsion = 24208.504584 eV
Total energy + Delta-G solvation = -3687.666303 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.74963 -38.36693 -37.16503 -35.32611 -33.98814 -33.26181 -31.49970 -30.60883
-29.96558 -28.48874 -26.72924 -25.78026 -25.44129 -23.07838 -22.19337 -21.56619
-20.12757 -19.10038 -18.96692 -17.05370 -16.70522 -16.34199 -15.91774 -15.51026
-15.15787 -14.59966 -14.49233 -14.18844 -13.91477 -13.79330 -13.46621 -13.40091
-12.98444 -12.71035 -12.50556 -12.29019 -12.13549 -12.01161 -11.99559 -11.78020
-11.57749 -11.49223 -11.32854 -11.10087 -10.87094 -10.65280 -10.60839 -10.52127
-10.39971 -10.21533 -10.00828 -9.70620 -9.38632 -8.96854 -8.60669 -8.38910
-8.26252 -8.00552 -7.55997 -5.89705 -3.87976 2.32781 2.38858 3.37904
3.44953 3.47652 3.65015 3.74252 4.44631 4.54625 4.79194 4.79713
4.87450 5.00413 5.20338 5.35924 5.45356 5.50350 5.57946 5.62585
5.69546 5.74577 5.76162 5.77463 5.86807 5.88383 5.96366 5.99482
6.07453 6.13844 6.16464 6.25749 6.28203 6.33038 6.37047 6.45318
6.59289 6.60779 6.87175 6.96280 7.09378 7.13970 7.34836 7.49490
7.57949 7.85864 7.91079 7.99457 8.09749 8.27293 8.44385 9.11951
9.23028 9.73303 11.20665
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013219 B = 0.004019 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2117.695659 B = 6964.714873 C = 8157.293490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.124 4.124
3 C -0.117 4.117
4 C 0.186 3.814
5 C -0.166 4.166
6 C 0.060 3.940
7 O -0.567 6.567
8 N -0.735 5.735
9 C 0.519 3.481
10 O -0.498 6.498
11 C -0.123 4.123
12 C 0.081 3.919
13 H 0.071 0.929
14 C -0.486 4.486
15 H 0.050 0.950
16 C 0.078 3.922
17 N -0.882 5.882
18 Si 0.885 3.115
19 H -0.275 1.275
20 H -0.285 1.285
21 H -0.288 1.288
22 C -0.020 4.020
23 C -0.116 4.116
24 C -0.132 4.132
25 C -0.156 4.156
26 C -0.128 4.128
27 C -0.119 4.119
28 H 0.052 0.948
29 H 0.051 0.949
30 H 0.053 0.947
31 H 0.065 0.935
32 H 0.065 0.935
33 H 0.074 0.926
34 H 0.063 0.937
35 H 0.084 0.916
36 H 0.059 0.941
37 H 0.057 0.943
38 H 0.042 0.958
39 H 0.074 0.926
40 H 0.373 0.627
41 H 0.391 0.609
42 H 0.062 0.938
43 H 0.075 0.925
44 H 0.257 0.743
45 H 0.113 0.887
46 H 0.105 0.895
47 H 0.103 0.897
48 H 0.105 0.895
49 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.764 -0.887 -1.766 14.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.162 4.162
3 C -0.154 4.154
4 C 0.099 3.901
5 C -0.224 4.224
6 C -0.019 4.019
7 O -0.371 6.371
8 N -0.389 5.389
9 C 0.306 3.694
10 O -0.370 6.370
11 C -0.164 4.164
12 C 0.062 3.938
13 H 0.089 0.911
14 C -0.523 4.523
15 H 0.068 0.932
16 C -0.124 4.124
17 N -0.520 5.520
18 Si 0.714 3.286
19 H -0.200 1.200
20 H -0.212 1.212
21 H -0.215 1.215
22 C -0.021 4.021
23 C -0.134 4.134
24 C -0.150 4.150
25 C -0.174 4.174
26 C -0.147 4.147
27 C -0.137 4.137
28 H 0.071 0.929
29 H 0.071 0.929
30 H 0.072 0.928
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.093 0.907
34 H 0.082 0.918
35 H 0.103 0.897
36 H 0.078 0.922
37 H 0.076 0.924
38 H 0.060 0.940
39 H 0.093 0.907
40 H 0.219 0.781
41 H 0.224 0.776
42 H 0.081 0.919
43 H 0.093 0.907
44 H 0.067 0.933
45 H 0.131 0.869
46 H 0.123 0.877
47 H 0.121 0.879
48 H 0.123 0.877
49 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges -14.248 -1.275 -2.295 14.488
hybrid contribution 0.470 -0.512 1.396 1.560
sum -13.778 -1.787 -0.898 13.922
Atomic orbital electron populations
1.21755 0.95930 1.01355 1.01720 1.21603 0.95666 0.96581 1.02311
1.21758 0.93600 0.97588 1.02501 1.20144 0.93122 0.83252 0.93582
1.22235 1.04473 0.99479 0.96197 1.22729 1.00343 0.93654 0.85172
1.86408 1.77155 1.57751 1.15831 1.46164 1.07650 1.06627 1.78485
1.20776 0.80859 0.92577 0.75184 1.90665 1.54670 1.45750 1.45955
1.21793 1.01059 0.92351 1.01152 1.17825 0.87040 0.88279 1.00668
0.91051 1.20708 1.07906 1.30871 0.92851 0.93189 1.24787 0.96405
0.95690 0.95542 1.69927 1.14253 1.40448 1.27323 0.86663 0.78101
0.79856 0.84013 1.20014 1.21162 1.21471 1.20757 0.93679 0.96554
0.91105 1.20955 1.00956 0.92549 0.98907 1.20972 0.99837 0.96535
0.97663 1.20786 1.02262 0.98672 0.95728 1.20979 1.00783 0.94259
0.98640 1.21088 0.99071 0.95011 0.98560 0.92879 0.92948 0.92769
0.91662 0.91678 0.90704 0.91812 0.89701 0.92198 0.92358 0.93969
0.90736 0.78093 0.77573 0.91931 0.90670 0.93306 0.86921 0.87707
0.87853 0.87687 0.86877
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16
2 C -0.12 -1.19 5.23 -26.73 -0.14 -1.33 16
3 C -0.12 -1.29 4.24 -26.73 -0.11 -1.40 16
4 C 0.19 2.59 0.62 -131.82 -0.08 2.51 16
5 C -0.17 -2.32 8.05 37.16 0.30 -2.02 16
6 C 0.06 0.90 5.38 37.16 0.20 1.10 16
7 O -0.57 -8.32 12.85 -35.23 -0.45 -8.78 16
8 N -0.73 -11.37 4.97 -47.60 -0.24 -11.61 16
9 C 0.52 10.26 7.00 -10.98 -0.08 10.18 16
10 O -0.50 -11.84 11.19 5.55 0.06 -11.77 16
11 C -0.12 -2.42 4.95 -27.88 -0.14 -2.56 16
12 C 0.08 1.94 1.67 -92.93 -0.16 1.78 16
13 H 0.07 1.96 6.98 -51.92 -0.36 1.59 16
14 C -0.49 -13.04 6.37 -34.44 -0.22 -13.26 16
15 H 0.05 1.36 7.82 -52.48 -0.41 0.95 16
16 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16
17 N -0.88 -25.90 12.87 55.43 0.71 -25.19 16
18 Si 0.88 22.27 29.54 -169.99 -5.02 17.24 16
19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
20 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16
23 C -0.12 -2.38 8.86 -39.58 -0.35 -2.73 16
24 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16
25 C -0.16 -2.77 10.05 -39.58 -0.40 -3.17 16
26 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16
27 C -0.12 -2.55 9.67 -39.58 -0.38 -2.93 16
28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
31 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16
32 H 0.06 0.66 6.43 -51.93 -0.33 0.32 16
33 H 0.07 0.88 7.68 -51.93 -0.40 0.49 16
34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16
35 H 0.08 1.49 6.17 -51.93 -0.32 1.17 16
36 H 0.06 0.71 6.43 -51.93 -0.33 0.37 16
37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16
38 H 0.04 0.54 6.43 -51.93 -0.33 0.21 16
39 H 0.07 1.42 6.17 -51.93 -0.32 1.09 16
40 H 0.37 4.20 9.12 45.56 0.42 4.61 16
41 H 0.39 5.09 8.47 -40.82 -0.35 4.75 16
42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
43 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16
44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16
45 H 0.11 2.25 7.76 -52.49 -0.41 1.84 16
46 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16
47 H 0.10 1.53 8.06 -52.49 -0.42 1.11 16
48 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16
49 H 0.11 2.44 7.95 -52.49 -0.42 2.02 16
LS Contribution 387.99 15.07 5.85 5.85
Total: -1.00 -32.12 387.99 -8.91 -41.04
By element:
Atomic # 1 Polarization: 19.61 SS G_CDS: -7.25 Total: 12.36 kcal
Atomic # 6 Polarization: -16.56 SS G_CDS: -2.58 Total: -19.14 kcal
Atomic # 7 Polarization: -37.27 SS G_CDS: 0.48 Total: -36.79 kcal
Atomic # 8 Polarization: -20.16 SS G_CDS: -0.39 Total: -20.55 kcal
Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -32.12 -8.91 -41.04 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356669882.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.179 kcal
(2) G-P(sol) polarization free energy of solvation -32.123 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.217 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds