Wall clock time and date at job start Tue Mar 31 2020 12:36:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.46812 * 2 1
4 4 C 1.53000 * 109.46812 * 179.97438 * 3 2 1
5 5 C 1.53001 * 109.47076 * 60.00218 * 4 3 2
6 6 C 1.53000 * 109.47099 * 299.99965 * 4 3 2
7 7 O 1.42899 * 109.47040 * 299.99684 * 6 4 3
8 8 N 1.46502 * 109.46825 * 179.97438 * 4 3 2
9 9 C 1.34778 * 119.99571 * 180.02562 * 8 4 3
10 10 O 1.21283 * 120.00463 * 359.97438 * 9 8 4
11 11 C 1.50706 * 120.00010 * 180.02562 * 9 8 4
12 12 C 1.52995 * 109.47514 * 179.97438 * 11 9 8
13 13 H 1.09008 * 109.46715 * 55.00049 * 12 11 9
14 14 C 1.50694 * 109.47256 * 295.00358 * 12 11 9
15 15 H 1.08007 * 119.99955 * 325.83666 * 14 12 11
16 16 C 1.37879 * 120.00414 * 145.84604 * 14 12 11
17 17 N 1.31515 * 119.99666 * 6.11128 * 16 14 12
18 18 Si 1.86797 * 120.00187 * 186.11960 * 16 14 12
19 19 H 1.48505 * 109.46955 * 359.97438 * 18 16 14
20 20 H 1.48498 * 109.47202 * 119.99413 * 18 16 14
21 21 H 1.48504 * 109.46880 * 239.99576 * 18 16 14
22 22 C 1.50698 * 109.47280 * 174.99827 * 12 11 9
23 23 C 1.38233 * 119.99930 * 63.47020 * 22 12 11
24 24 C 1.38240 * 119.99920 * 179.78975 * 23 22 12
25 25 C 1.38233 * 119.99789 * 0.44131 * 24 23 22
26 26 C 1.38238 * 120.00486 * 359.81239 * 25 24 23
27 27 C 1.38238 * 119.99565 * 359.97438 * 26 25 24
28 28 H 1.08999 * 109.47441 * 60.00151 * 1 2 3
29 29 H 1.09000 * 109.46671 * 179.97438 * 1 2 3
30 30 H 1.08994 * 109.47138 * 300.00240 * 1 2 3
31 31 H 1.08998 * 109.46906 * 240.00219 * 2 1 3
32 32 H 1.08999 * 109.47441 * 119.99849 * 2 1 3
33 33 H 1.08994 * 109.47465 * 59.99960 * 3 2 1
34 34 H 1.08998 * 109.47455 * 299.99855 * 3 2 1
35 35 H 1.09000 * 109.47073 * 180.02562 * 5 4 3
36 36 H 1.09000 * 109.47209 * 299.99472 * 5 4 3
37 37 H 1.08998 * 109.47275 * 60.00094 * 5 4 3
38 38 H 1.08997 * 109.46821 * 60.00469 * 6 4 3
39 39 H 1.09006 * 109.46499 * 180.02562 * 6 4 3
40 40 H 0.96701 * 113.99669 * 179.97438 * 7 6 4
41 41 H 0.97001 * 120.00175 * 359.97438 * 8 4 3
42 42 H 1.08999 * 109.46670 * 299.99818 * 11 9 8
43 43 H 1.09003 * 109.46971 * 59.98911 * 11 9 8
44 44 H 0.97003 * 120.00037 * 180.02562 * 17 16 14
45 45 H 1.08002 * 119.99998 * 0.02562 * 23 22 12
46 46 H 1.07994 * 119.99800 * 180.28015 * 24 23 22
47 47 H 1.07997 * 119.99929 * 179.83654 * 25 24 23
48 48 H 1.07989 * 120.00464 * 179.97438 * 26 25 24
49 49 H 1.07998 * 120.00035 * 180.02562 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4426 0.0006
5 6 4.0804 0.7212 -1.2483
6 6 4.0794 0.7215 1.2502
7 8 3.6026 1.3954 2.4167
8 7 4.0582 2.8238 0.0000
9 6 5.3833 3.0701 -0.0001
10 8 6.1715 2.1483 0.0008
11 6 5.8857 4.4909 -0.0001
12 6 7.4156 4.4910 0.0004
13 1 7.7792 3.9014 -0.8413
14 6 7.9176 3.8907 1.2882
15 1 7.3676 4.0426 2.2053
16 6 9.0790 3.1477 1.2960
17 7 9.8123 3.0625 0.2076
18 14 9.6108 2.2620 2.8523
19 1 8.6203 2.5158 3.9293
20 1 9.6926 0.8030 2.5882
21 1 10.9425 2.7637 3.2768
22 6 7.9180 5.9064 -0.1235
23 6 7.6439 6.8266 0.8709
24 6 8.1084 8.1238 0.7593
25 6 8.8392 8.5031 -0.3511
26 6 9.1089 7.5842 -1.3481
27 6 8.6481 6.2859 -1.2343
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8899
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5138 0.8900
33 1 1.6766 1.9564 0.8899
34 1 1.6766 1.9564 -0.8900
35 1 5.1705 0.7208 -1.2476
36 1 3.7172 -0.3065 -1.2483
37 1 3.7175 1.2349 -2.1385
38 1 3.7161 -0.3061 1.2501
39 1 5.1695 0.7220 1.2508
40 1 3.8873 0.9917 3.2480
41 1 3.4278 3.5611 -0.0011
42 1 5.5223 5.0047 -0.8901
43 1 5.5223 5.0048 0.8898
44 1 10.6293 2.5394 0.2129
45 1 7.0700 6.5311 1.7368
46 1 7.8981 8.8415 1.5383
47 1 9.1999 9.5172 -0.4395
48 1 9.6795 7.8806 -2.2157
49 1 8.8591 5.5679 -2.0130
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000356669882.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:36:40
Heat of formation + Delta-G solvation = -100.294166 kcal
Electronic energy + Delta-G solvation = -27897.084864 eV
Core-core repulsion = 24208.504584 eV
Total energy + Delta-G solvation = -3688.580280 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-41.13530 -39.89475 -38.52242 -36.45483 -35.73533 -34.46091 -33.41377 -31.87730
-31.49028 -30.01316 -27.72060 -27.37272 -26.88989 -24.68969 -23.33640 -23.05246
-21.54191 -20.64059 -20.23155 -18.50349 -18.24492 -17.99696 -17.32047 -16.81494
-16.45485 -16.11469 -16.02472 -15.77746 -15.43435 -15.16241 -14.80861 -14.40993
-14.27146 -14.16126 -13.95167 -13.77382 -13.58702 -13.45496 -13.21495 -13.04683
-13.00126 -12.86820 -12.70548 -12.50533 -12.40747 -12.31541 -11.94943 -11.81748
-11.65776 -11.49901 -11.45672 -11.28778 -10.95963 -10.86488 -10.49643 -10.04661
-9.77709 -9.53702 -9.17536 -8.02943 -6.04252 0.78350 0.85132 1.33834
1.36627 1.44783 2.09702 2.44044 2.46434 3.19629 3.33941 3.37581
3.80620 3.95719 4.15132 4.25138 4.26530 4.28075 4.36299 4.41430
4.43904 4.56349 4.59746 4.62358 4.68201 4.71358 4.77510 4.81070
4.88418 4.93977 5.00446 5.02028 5.03978 5.09598 5.23565 5.27565
5.36293 5.39257 5.46458 5.53199 5.54706 5.66073 5.79909 5.84131
5.85806 5.96709 6.19381 6.43796 6.48157 6.82337 6.92424 7.03115
7.57957 7.73996 9.07054
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.013219 B = 0.004019 C = 0.003432
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2117.695659 B = 6964.714873 C = 8157.293490
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.123 4.123
3 C -0.105 4.105
4 C 0.180 3.820
5 C -0.160 4.160
6 C 0.064 3.936
7 O -0.575 6.575
8 N -0.719 5.719
9 C 0.515 3.485
10 O -0.545 6.545
11 C -0.118 4.118
12 C 0.086 3.914
13 H 0.025 0.975
14 C -0.477 4.477
15 H 0.042 0.958
16 C 0.026 3.974
17 N -0.917 5.917
18 Si 0.933 3.067
19 H -0.267 1.267
20 H -0.292 1.292
21 H -0.284 1.284
22 C -0.045 4.045
23 C -0.129 4.129
24 C -0.127 4.127
25 C -0.148 4.148
26 C -0.128 4.128
27 C -0.144 4.144
28 H 0.059 0.941
29 H 0.060 0.940
30 H 0.053 0.947
31 H 0.070 0.930
32 H 0.059 0.941
33 H 0.071 0.929
34 H 0.078 0.922
35 H 0.042 0.958
36 H 0.083 0.917
37 H 0.068 0.932
38 H 0.067 0.933
39 H 0.028 0.972
40 H 0.387 0.613
41 H 0.406 0.594
42 H 0.086 0.914
43 H 0.088 0.912
44 H 0.252 0.748
45 H 0.113 0.887
46 H 0.140 0.860
47 H 0.144 0.856
48 H 0.132 0.868
49 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.866 0.938 -1.213 16.936
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.161 4.161
3 C -0.143 4.143
4 C 0.094 3.906
5 C -0.218 4.218
6 C -0.015 4.015
7 O -0.382 6.382
8 N -0.373 5.373
9 C 0.303 3.697
10 O -0.421 6.421
11 C -0.158 4.158
12 C 0.066 3.934
13 H 0.043 0.957
14 C -0.515 4.515
15 H 0.060 0.940
16 C -0.172 4.172
17 N -0.557 5.557
18 Si 0.761 3.239
19 H -0.192 1.192
20 H -0.218 1.218
21 H -0.210 1.210
22 C -0.046 4.046
23 C -0.147 4.147
24 C -0.144 4.144
25 C -0.166 4.166
26 C -0.146 4.146
27 C -0.162 4.162
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.072 0.928
31 H 0.088 0.912
32 H 0.078 0.922
33 H 0.089 0.911
34 H 0.097 0.903
35 H 0.061 0.939
36 H 0.101 0.899
37 H 0.087 0.913
38 H 0.085 0.915
39 H 0.047 0.953
40 H 0.235 0.765
41 H 0.241 0.759
42 H 0.104 0.896
43 H 0.106 0.894
44 H 0.061 0.939
45 H 0.131 0.869
46 H 0.158 0.842
47 H 0.162 0.838
48 H 0.150 0.850
49 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -16.406 0.570 -1.718 16.506
hybrid contribution 1.059 -1.006 1.201 1.892
sum -15.347 -0.436 -0.516 15.362
Atomic orbital electron populations
1.21726 0.94570 1.02109 1.02049 1.21602 0.96813 0.95328 1.02317
1.21688 0.90620 0.98923 1.03039 1.20373 0.95268 0.81966 0.93041
1.22169 1.01702 1.01230 0.96738 1.22624 0.97633 0.95320 0.85928
1.86364 1.76988 1.58336 1.16480 1.45984 1.06403 1.08186 1.76678
1.20825 0.81994 0.92047 0.74873 1.90670 1.56262 1.46866 1.48306
1.21672 0.98333 0.93000 1.02800 1.17589 0.89607 0.88824 0.97329
0.95700 1.20933 1.06960 1.29991 0.93603 0.93968 1.25423 0.97084
0.96988 0.97751 1.70060 1.14748 1.41936 1.28963 0.85897 0.77973
0.78479 0.81596 1.19168 1.21826 1.20994 1.20598 0.95215 0.96092
0.92691 1.21032 1.01753 0.93541 0.98381 1.21366 0.98520 0.95934
0.98629 1.21257 1.00675 1.00151 0.94506 1.21290 1.00202 0.93084
1.00026 1.21105 1.00323 0.96361 0.98409 0.92174 0.92044 0.92831
0.91157 0.92199 0.91064 0.90296 0.93871 0.89862 0.91283 0.91546
0.95328 0.76498 0.75855 0.89577 0.89412 0.93871 0.86909 0.84206
0.83847 0.85004 0.88790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16
2 C -0.12 -2.06 5.23 30.60 0.16 -1.90 16
3 C -0.10 -2.08 4.24 30.60 0.13 -1.95 16
4 C 0.18 4.91 0.62 3.60 0.00 4.91 16
5 C -0.16 -4.49 8.05 71.98 0.58 -3.91 16
6 C 0.06 1.93 5.38 71.98 0.39 2.31 16
7 O -0.58 -16.51 12.85 -148.98 -1.91 -18.43 16
8 N -0.72 -22.02 4.97 -422.91 -2.10 -24.13 16
9 C 0.52 21.04 7.00 87.66 0.61 21.65 16
10 O -0.55 -27.52 11.19 -3.04 -0.03 -27.56 16
11 C -0.12 -4.72 4.95 29.85 0.15 -4.57 16
12 C 0.09 4.28 1.67 -12.29 -0.02 4.26 16
13 H 0.02 1.46 6.98 -2.38 -0.02 1.44 16
14 C -0.48 -26.57 6.37 25.60 0.16 -26.41 16
15 H 0.04 2.36 7.82 -2.91 -0.02 2.33 16
16 C 0.03 1.52 5.45 84.65 0.46 1.98 16
17 N -0.92 -56.76 12.87 21.45 0.28 -56.48 16
18 Si 0.93 47.20 29.54 68.60 2.03 49.23 16
19 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16
20 H -0.29 -14.91 7.11 99.48 0.71 -14.20 16
21 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16
22 C -0.05 -2.07 4.77 -19.87 -0.09 -2.16 16
23 C -0.13 -5.18 8.86 22.27 0.20 -4.98 16
24 C -0.13 -4.23 10.05 22.27 0.22 -4.00 16
25 C -0.15 -4.70 10.05 22.27 0.22 -4.47 16
26 C -0.13 -4.57 10.05 22.27 0.22 -4.35 16
27 C -0.14 -6.27 9.67 22.27 0.22 -6.06 16
28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
31 H 0.07 1.12 6.43 -2.39 -0.02 1.10 16
32 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16
33 H 0.07 1.51 7.68 -2.39 -0.02 1.49 16
34 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16
35 H 0.04 1.60 6.17 -2.39 -0.01 1.58 16
36 H 0.08 1.88 6.43 -2.39 -0.02 1.87 16
37 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
38 H 0.07 1.66 6.43 -2.39 -0.02 1.65 16
39 H 0.03 1.14 6.17 -2.38 -0.01 1.13 16
40 H 0.39 8.49 9.12 -74.06 -0.68 7.82 16
41 H 0.41 9.98 8.47 -92.71 -0.79 9.20 16
42 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16
43 H 0.09 3.26 7.78 -2.39 -0.02 3.24 16
44 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16
45 H 0.11 4.42 7.76 -2.91 -0.02 4.39 16
46 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16
47 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16
48 H 0.13 3.91 8.06 -2.92 -0.02 3.89 16
49 H 0.09 4.33 7.95 -2.91 -0.02 4.31 16
Total: -1.00 -74.07 387.99 2.07 -72.01
By element:
Atomic # 1 Polarization: 36.80 SS G_CDS: -0.51 Total: 36.29 kcal
Atomic # 6 Polarization: -35.26 SS G_CDS: 4.33 Total: -30.93 kcal
Atomic # 7 Polarization: -78.78 SS G_CDS: -1.83 Total: -80.61 kcal
Atomic # 8 Polarization: -44.04 SS G_CDS: -1.95 Total: -45.98 kcal
Atomic # 14 Polarization: 47.20 SS G_CDS: 2.03 Total: 49.23 kcal
Total: -74.07 2.07 -72.01 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000356669882.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.287 kcal
(2) G-P(sol) polarization free energy of solvation -74.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.362 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.294 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds