Wall clock time and date at job start Tue Mar 31 2020 12:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47524 * 2 1 4 4 C 1.53002 * 109.47377 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46747 * 59.99548 * 4 3 2 6 6 C 1.53000 * 109.47021 * 300.00094 * 4 3 2 7 7 O 1.42907 * 109.47042 * 299.99886 * 6 4 3 8 8 N 1.46492 * 109.46987 * 179.97438 * 4 3 2 9 9 C 1.34776 * 119.99783 * 179.97438 * 8 4 3 10 10 O 1.21276 * 120.00139 * 359.97438 * 9 8 4 11 11 C 1.50707 * 119.99866 * 179.97438 * 9 8 4 12 12 C 1.53002 * 109.47070 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46917 * 305.37219 * 12 11 9 14 14 C 1.50697 * 109.47176 * 65.36736 * 12 11 9 15 15 H 1.08006 * 120.00073 * 34.62267 * 14 12 11 16 16 C 1.37873 * 120.00151 * 214.62088 * 14 12 11 17 17 N 1.31523 * 119.99811 * 186.44975 * 16 14 12 18 18 Si 1.86800 * 120.00035 * 6.44725 * 16 14 12 19 19 H 1.48495 * 109.46941 * 85.01162 * 18 16 14 20 20 H 1.48496 * 109.47009 * 205.00807 * 18 16 14 21 21 H 1.48498 * 109.47189 * 325.01255 * 18 16 14 22 22 C 1.50698 * 109.47095 * 185.37244 * 12 11 9 23 23 C 1.38239 * 119.99546 * 296.35782 * 22 12 11 24 24 C 1.38239 * 119.99533 * 179.78899 * 23 22 12 25 25 C 1.38233 * 119.99961 * 0.44305 * 24 23 22 26 26 C 1.38234 * 120.00362 * 359.80747 * 25 24 23 27 27 C 1.38230 * 120.00442 * 116.63134 * 22 12 11 28 28 H 1.09005 * 109.47260 * 300.00241 * 1 2 3 29 29 H 1.08998 * 109.47004 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47612 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47154 * 239.99325 * 2 1 3 32 32 H 1.09005 * 109.46650 * 120.00002 * 2 1 3 33 33 H 1.08998 * 109.46717 * 59.99507 * 3 2 1 34 34 H 1.08999 * 109.46504 * 299.99850 * 3 2 1 35 35 H 1.08999 * 109.46806 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.47732 * 299.99793 * 5 4 3 37 37 H 1.09005 * 109.47105 * 60.00641 * 5 4 3 38 38 H 1.08997 * 109.47440 * 59.99448 * 6 4 3 39 39 H 1.08999 * 109.47014 * 179.97438 * 6 4 3 40 40 H 0.96697 * 114.00228 * 180.02562 * 7 6 4 41 41 H 0.97002 * 120.00062 * 359.97438 * 8 4 3 42 42 H 1.09005 * 109.46926 * 60.00058 * 11 9 8 43 43 H 1.08999 * 109.46933 * 300.00090 * 11 9 8 44 44 H 0.96999 * 119.99384 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.00160 * 359.97438 * 23 22 12 46 46 H 1.08000 * 119.99653 * 180.27359 * 24 23 22 47 47 H 1.07999 * 119.99753 * 179.83453 * 25 24 23 48 48 H 1.07994 * 120.00427 * 180.02562 * 26 25 24 49 49 H 1.08006 * 119.99413 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0805 0.7209 -1.2482 6 6 4.0795 0.7214 1.2502 7 8 3.6027 1.3952 2.4167 8 7 4.0584 2.8236 0.0000 9 6 5.3834 3.0698 0.0010 10 8 6.1715 2.1480 0.0028 11 6 5.8858 4.4907 -0.0003 12 6 7.4158 4.4906 0.0005 13 1 7.7787 3.8966 0.8393 14 6 7.9188 3.8971 -1.2901 15 1 7.3736 4.0601 -2.2081 16 6 9.0750 3.1461 -1.2991 17 7 9.5832 2.7349 -2.4404 18 14 9.9197 2.7125 0.3096 19 1 9.2994 1.4901 0.8806 20 1 11.3625 2.4652 0.0601 21 1 9.7686 3.8377 1.2669 22 6 7.9181 5.9053 0.1323 23 6 7.6479 6.8299 -0.8592 24 6 8.1049 8.1287 -0.7362 25 6 8.8399 8.5006 0.3738 26 6 9.1146 7.5747 1.3629 27 6 8.6539 6.2770 1.2419 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 5.1705 0.7205 -1.2476 36 1 3.7172 -0.3067 -1.2482 37 1 3.7176 1.2346 -2.1385 38 1 3.7161 -0.3062 1.2503 39 1 5.1695 0.7209 1.2504 40 1 3.8879 0.9921 3.2481 41 1 3.4280 3.5609 -0.0011 42 1 5.5217 5.0056 0.8888 43 1 5.5233 5.0034 -0.8912 44 1 10.3968 2.2068 -2.4467 45 1 7.0772 6.5382 -1.7285 46 1 7.8900 8.8522 -1.5088 47 1 9.1993 9.5146 0.4686 48 1 9.6885 7.8653 2.2303 49 1 8.8684 5.5536 2.0147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356669883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:44 Heat of formation + Delta-G solvation = -77.150727 kcal Electronic energy + Delta-G solvation = -27931.766276 eV Core-core repulsion = 24244.189571 eV Total energy + Delta-G solvation = -3687.576705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.84371 -38.59118 -37.27907 -35.42833 -34.10390 -33.33073 -31.68237 -30.72973 -30.16925 -28.67986 -26.71608 -25.89744 -25.74586 -22.95681 -22.24599 -21.79911 -20.19571 -19.06503 -19.02286 -17.17100 -16.90948 -16.70584 -16.08627 -15.60377 -15.19945 -14.78194 -14.61133 -14.16150 -14.00535 -13.84284 -13.49242 -13.39704 -13.10578 -12.72742 -12.67898 -12.48718 -12.36087 -12.13507 -12.00495 -11.94516 -11.75546 -11.54904 -11.35115 -11.12758 -10.98873 -10.74471 -10.63254 -10.51047 -10.44801 -10.31377 -9.83253 -9.81315 -9.57470 -9.13459 -8.65232 -8.48967 -8.34371 -8.17494 -7.77882 -5.95853 -3.91767 2.13026 2.18180 3.44938 3.48879 3.53921 3.55301 3.66440 4.35732 4.55642 4.61122 4.76392 4.85987 4.98513 5.18007 5.30080 5.38584 5.45150 5.53183 5.54742 5.58890 5.63726 5.70094 5.73184 5.73787 5.86735 5.95381 5.97437 6.00271 6.02670 6.06320 6.12135 6.15040 6.23854 6.27806 6.30636 6.37281 6.65289 6.69858 6.74302 6.87079 7.03793 7.09303 7.17365 7.30860 7.61381 7.72776 7.75942 7.85926 8.18058 8.56224 9.03496 9.11705 9.69922 11.17106 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003917 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.797716 B = 7146.800700 C = 7935.364255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.186 3.814 5 C -0.167 4.167 6 C 0.060 3.940 7 O -0.568 6.568 8 N -0.732 5.732 9 C 0.521 3.479 10 O -0.504 6.504 11 C -0.118 4.118 12 C 0.057 3.943 13 H 0.048 0.952 14 C -0.484 4.484 15 H 0.070 0.930 16 C 0.086 3.914 17 N -0.900 5.900 18 Si 0.874 3.126 19 H -0.274 1.274 20 H -0.298 1.298 21 H -0.262 1.262 22 C -0.038 4.038 23 C -0.102 4.102 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.127 4.127 27 C -0.136 4.136 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.071 0.929 40 H 0.372 0.628 41 H 0.393 0.607 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.261 0.739 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.670 0.302 7.251 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.154 4.154 4 C 0.099 3.901 5 C -0.225 4.225 6 C -0.019 4.019 7 O -0.372 6.372 8 N -0.386 5.386 9 C 0.308 3.692 10 O -0.377 6.377 11 C -0.159 4.159 12 C 0.038 3.962 13 H 0.066 0.934 14 C -0.521 4.521 15 H 0.088 0.912 16 C -0.116 4.116 17 N -0.538 5.538 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.225 1.225 21 H -0.187 1.187 22 C -0.038 4.038 23 C -0.120 4.120 24 C -0.146 4.146 25 C -0.168 4.168 26 C -0.145 4.145 27 C -0.155 4.155 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.090 0.910 40 H 0.218 0.782 41 H 0.226 0.774 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.181 -0.108 6.695 15.682 hybrid contribution 0.627 -0.329 1.075 1.288 sum -13.553 -0.437 7.770 15.629 Atomic orbital electron populations 1.21754 0.95901 1.01381 1.01724 1.21603 0.95694 0.96532 1.02339 1.21761 0.93494 0.97660 1.02532 1.20168 0.93211 0.83068 0.93623 1.22245 1.04859 0.99322 0.96079 1.22746 1.00050 0.93983 0.85112 1.86427 1.77265 1.57721 1.15826 1.46096 1.07513 1.06826 1.78191 1.20698 0.81047 0.92366 0.75098 1.90646 1.54834 1.45828 1.46402 1.21673 0.99660 0.92751 1.01778 1.18106 0.89570 0.88795 0.99728 0.93360 1.20567 1.08843 1.30446 0.92224 0.91185 1.24867 0.96395 0.94753 0.95612 1.69906 1.21273 1.37262 1.25339 0.86923 0.77644 0.79808 0.85405 1.19947 1.22457 1.18662 1.20757 0.94635 0.96765 0.91679 1.20959 1.00241 0.92252 0.98516 1.21048 0.99335 0.96559 0.97644 1.20852 1.01617 0.98779 0.95571 1.20960 1.00756 0.93949 0.98802 1.21150 1.00123 0.95655 0.98524 0.92816 0.92819 0.92927 0.91548 0.91751 0.90765 0.91678 0.89339 0.92261 0.92151 0.93673 0.91044 0.78202 0.77429 0.91500 0.89968 0.92941 0.86309 0.87226 0.87465 0.87423 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.15 0.37 -0.86 16 2 C -0.12 -1.19 5.23 -26.73 -0.14 -1.33 16 3 C -0.12 -1.27 4.24 -26.73 -0.11 -1.39 16 4 C 0.19 2.57 0.62 -131.82 -0.08 2.49 16 5 C -0.17 -2.49 8.05 37.16 0.30 -2.20 16 6 C 0.06 0.84 5.38 37.16 0.20 1.04 16 7 O -0.57 -7.45 12.85 -35.23 -0.45 -7.90 16 8 N -0.73 -11.11 4.97 -47.61 -0.24 -11.35 16 9 C 0.52 10.07 7.00 -10.98 -0.08 10.00 16 10 O -0.50 -11.77 11.21 5.56 0.06 -11.71 16 11 C -0.12 -2.23 4.94 -27.88 -0.14 -2.37 16 12 C 0.06 1.31 1.28 -92.92 -0.12 1.19 16 13 H 0.05 1.18 4.78 -51.92 -0.25 0.93 16 14 C -0.48 -13.19 6.94 -34.44 -0.24 -13.43 16 15 H 0.07 2.07 8.06 -52.48 -0.42 1.65 16 16 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 17 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 18 Si 0.87 22.79 27.04 -169.99 -4.60 18.20 16 19 H -0.27 -7.28 7.11 56.52 0.40 -6.87 16 20 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 21 H -0.26 -6.37 5.15 56.52 0.29 -6.08 16 22 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 23 C -0.10 -2.00 8.87 -39.58 -0.35 -2.36 16 24 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 25 C -0.15 -2.49 10.05 -39.58 -0.40 -2.88 16 26 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 27 C -0.14 -2.73 9.13 -39.59 -0.36 -3.09 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.63 6.43 -51.93 -0.33 0.30 16 32 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 33 H 0.07 0.84 7.68 -51.93 -0.40 0.44 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.69 6.17 -51.93 -0.32 1.37 16 36 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 39 H 0.07 1.25 6.17 -51.93 -0.32 0.93 16 40 H 0.37 3.46 9.12 45.56 0.42 3.87 16 41 H 0.39 4.94 8.47 -40.82 -0.35 4.60 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.08 1.46 7.80 -51.93 -0.41 1.05 16 44 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 45 H 0.12 2.31 7.77 -52.49 -0.41 1.90 16 46 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 49 H 0.11 2.19 6.96 -52.48 -0.37 1.83 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -33.51 381.37 -8.45 -41.96 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -7.21 Total: 11.57 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -2.54 Total: -19.29 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.54 Total: -38.58 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.39 Total: -19.61 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.60 Total: 18.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.51 -8.45 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356669883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.191 kcal (2) G-P(sol) polarization free energy of solvation -33.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds