Wall clock time and date at job start Tue Mar 31 2020 12:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47524 * 2 1 4 4 C 1.53002 * 109.47377 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46747 * 59.99548 * 4 3 2 6 6 C 1.53000 * 109.47021 * 300.00094 * 4 3 2 7 7 O 1.42907 * 109.47042 * 299.99886 * 6 4 3 8 8 N 1.46492 * 109.46987 * 179.97438 * 4 3 2 9 9 C 1.34776 * 119.99783 * 179.97438 * 8 4 3 10 10 O 1.21276 * 120.00139 * 359.97438 * 9 8 4 11 11 C 1.50707 * 119.99866 * 179.97438 * 9 8 4 12 12 C 1.53002 * 109.47070 * 180.02562 * 11 9 8 13 13 H 1.09007 * 109.46917 * 305.37219 * 12 11 9 14 14 C 1.50697 * 109.47176 * 65.36736 * 12 11 9 15 15 H 1.08006 * 120.00073 * 34.62267 * 14 12 11 16 16 C 1.37873 * 120.00151 * 214.62088 * 14 12 11 17 17 N 1.31523 * 119.99811 * 186.44975 * 16 14 12 18 18 Si 1.86800 * 120.00035 * 6.44725 * 16 14 12 19 19 H 1.48495 * 109.46941 * 85.01162 * 18 16 14 20 20 H 1.48496 * 109.47009 * 205.00807 * 18 16 14 21 21 H 1.48498 * 109.47189 * 325.01255 * 18 16 14 22 22 C 1.50698 * 109.47095 * 185.37244 * 12 11 9 23 23 C 1.38239 * 119.99546 * 296.35782 * 22 12 11 24 24 C 1.38239 * 119.99533 * 179.78899 * 23 22 12 25 25 C 1.38233 * 119.99961 * 0.44305 * 24 23 22 26 26 C 1.38234 * 120.00362 * 359.80747 * 25 24 23 27 27 C 1.38230 * 120.00442 * 116.63134 * 22 12 11 28 28 H 1.09005 * 109.47260 * 300.00241 * 1 2 3 29 29 H 1.08998 * 109.47004 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47612 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47154 * 239.99325 * 2 1 3 32 32 H 1.09005 * 109.46650 * 120.00002 * 2 1 3 33 33 H 1.08998 * 109.46717 * 59.99507 * 3 2 1 34 34 H 1.08999 * 109.46504 * 299.99850 * 3 2 1 35 35 H 1.08999 * 109.46806 * 180.02562 * 5 4 3 36 36 H 1.08992 * 109.47732 * 299.99793 * 5 4 3 37 37 H 1.09005 * 109.47105 * 60.00641 * 5 4 3 38 38 H 1.08997 * 109.47440 * 59.99448 * 6 4 3 39 39 H 1.08999 * 109.47014 * 179.97438 * 6 4 3 40 40 H 0.96697 * 114.00228 * 180.02562 * 7 6 4 41 41 H 0.97002 * 120.00062 * 359.97438 * 8 4 3 42 42 H 1.09005 * 109.46926 * 60.00058 * 11 9 8 43 43 H 1.08999 * 109.46933 * 300.00090 * 11 9 8 44 44 H 0.96999 * 119.99384 * 179.97438 * 17 16 14 45 45 H 1.07998 * 120.00160 * 359.97438 * 23 22 12 46 46 H 1.08000 * 119.99653 * 180.27359 * 24 23 22 47 47 H 1.07999 * 119.99753 * 179.83453 * 25 24 23 48 48 H 1.07994 * 120.00427 * 180.02562 * 26 25 24 49 49 H 1.08006 * 119.99413 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0805 0.7209 -1.2482 6 6 4.0795 0.7214 1.2502 7 8 3.6027 1.3952 2.4167 8 7 4.0584 2.8236 0.0000 9 6 5.3834 3.0698 0.0010 10 8 6.1715 2.1480 0.0028 11 6 5.8858 4.4907 -0.0003 12 6 7.4158 4.4906 0.0005 13 1 7.7787 3.8966 0.8393 14 6 7.9188 3.8971 -1.2901 15 1 7.3736 4.0601 -2.2081 16 6 9.0750 3.1461 -1.2991 17 7 9.5832 2.7349 -2.4404 18 14 9.9197 2.7125 0.3096 19 1 9.2994 1.4901 0.8806 20 1 11.3625 2.4652 0.0601 21 1 9.7686 3.8377 1.2669 22 6 7.9181 5.9053 0.1323 23 6 7.6479 6.8299 -0.8592 24 6 8.1049 8.1287 -0.7362 25 6 8.8399 8.5006 0.3738 26 6 9.1146 7.5747 1.3629 27 6 8.6539 6.2770 1.2419 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9562 -0.8900 35 1 5.1705 0.7205 -1.2476 36 1 3.7172 -0.3067 -1.2482 37 1 3.7176 1.2346 -2.1385 38 1 3.7161 -0.3062 1.2503 39 1 5.1695 0.7209 1.2504 40 1 3.8879 0.9921 3.2481 41 1 3.4280 3.5609 -0.0011 42 1 5.5217 5.0056 0.8888 43 1 5.5233 5.0034 -0.8912 44 1 10.3968 2.2068 -2.4467 45 1 7.0772 6.5382 -1.7285 46 1 7.8900 8.8522 -1.5088 47 1 9.1993 9.5146 0.4686 48 1 9.6885 7.8653 2.2303 49 1 8.8684 5.5536 2.0147 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356669883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:43 Heat of formation + Delta-G solvation = -100.555483 kcal Electronic energy + Delta-G solvation = -27932.781182 eV Core-core repulsion = 24244.189571 eV Total energy + Delta-G solvation = -3688.591612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.21202 -40.03288 -38.58319 -36.47701 -35.80556 -34.50794 -33.71215 -31.96327 -31.59087 -30.13946 -27.82302 -27.59612 -26.91331 -24.52093 -23.44513 -23.14494 -21.54049 -20.60517 -20.26211 -19.00108 -18.28845 -18.08766 -17.41258 -16.85220 -16.48226 -16.19394 -16.13402 -15.66295 -15.40924 -15.25686 -14.91298 -14.55951 -14.41186 -14.21802 -14.14299 -13.86739 -13.80666 -13.51919 -13.31913 -13.13025 -13.04933 -12.81787 -12.72518 -12.61202 -12.35434 -12.11674 -11.95259 -11.88236 -11.76714 -11.52368 -11.48551 -11.43003 -11.06705 -10.92548 -10.58944 -10.15105 -9.82606 -9.61802 -9.29219 -8.21154 -6.16294 0.68719 0.73875 1.30876 1.38252 1.41012 2.03042 2.38722 2.42177 3.08515 3.26235 3.31560 3.78039 3.93476 4.08425 4.14296 4.21340 4.25815 4.31363 4.33002 4.41173 4.46245 4.49834 4.57647 4.59404 4.67222 4.70511 4.77098 4.85949 4.86971 4.87847 4.99429 5.02526 5.06479 5.14366 5.21820 5.24203 5.35501 5.39071 5.41277 5.45638 5.52724 5.69852 5.77006 5.81048 5.83081 6.03644 6.34351 6.37667 6.81907 6.83606 6.87208 7.47243 7.66067 8.95823 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014665 B = 0.003917 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.797716 B = 7146.800700 C = 7935.364255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.105 4.105 4 C 0.180 3.820 5 C -0.162 4.162 6 C 0.066 3.934 7 O -0.573 6.573 8 N -0.717 5.717 9 C 0.515 3.485 10 O -0.551 6.551 11 C -0.114 4.114 12 C 0.060 3.940 13 H 0.031 0.969 14 C -0.459 4.459 15 H 0.034 0.966 16 C 0.027 3.973 17 N -0.953 5.953 18 Si 0.922 3.078 19 H -0.287 1.287 20 H -0.300 1.300 21 H -0.235 1.235 22 C -0.063 4.063 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.141 4.141 26 C -0.124 4.124 27 C -0.154 4.154 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.031 0.969 40 H 0.389 0.611 41 H 0.408 0.592 42 H 0.097 0.903 43 H 0.091 0.909 44 H 0.257 0.743 45 H 0.109 0.891 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.418 2.541 9.115 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.143 4.143 4 C 0.094 3.906 5 C -0.220 4.220 6 C -0.013 4.013 7 O -0.380 6.380 8 N -0.370 5.370 9 C 0.302 3.698 10 O -0.428 6.428 11 C -0.154 4.154 12 C 0.041 3.959 13 H 0.049 0.951 14 C -0.497 4.497 15 H 0.052 0.948 16 C -0.169 4.169 17 N -0.594 5.594 18 Si 0.750 3.250 19 H -0.214 1.214 20 H -0.227 1.227 21 H -0.158 1.158 22 C -0.064 4.064 23 C -0.138 4.138 24 C -0.143 4.143 25 C -0.158 4.158 26 C -0.142 4.142 27 C -0.173 4.173 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.049 0.951 40 H 0.238 0.762 41 H 0.243 0.757 42 H 0.115 0.885 43 H 0.110 0.890 44 H 0.066 0.934 45 H 0.127 0.873 46 H 0.157 0.843 47 H 0.165 0.835 48 H 0.157 0.843 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.987 2.170 8.598 18.281 hybrid contribution 1.057 -0.919 0.503 1.488 sum -14.930 1.251 9.100 17.529 Atomic orbital electron populations 1.21725 0.94531 1.02125 1.02066 1.21603 0.96851 0.95330 1.02309 1.21690 0.90533 0.98949 1.03086 1.20360 0.95335 0.81896 0.93024 1.22170 1.01681 1.01216 0.96922 1.22568 0.97642 0.95351 0.85711 1.86374 1.77062 1.58177 1.16405 1.45940 1.06390 1.08291 1.76393 1.20845 0.82132 0.92024 0.74765 1.90649 1.56365 1.47002 1.48774 1.21592 0.97114 0.93121 1.03606 1.17969 0.92040 0.89705 0.96231 0.95115 1.20748 1.07229 1.28821 0.92888 0.94799 1.25541 0.97778 0.95649 0.97954 1.70040 1.22330 1.39783 1.27289 0.86133 0.76222 0.79764 0.82902 1.21359 1.22716 1.15795 1.20524 0.96443 0.95931 0.93464 1.21009 1.01211 0.93526 0.98016 1.21402 0.98359 0.95829 0.98726 1.21333 0.99831 1.00385 0.94289 1.21332 1.00029 0.92791 1.00074 1.21254 1.00589 0.97173 0.98241 0.92569 0.92391 0.92046 0.91539 0.91852 0.90557 0.90686 0.94060 0.89853 0.92007 0.91452 0.95067 0.76250 0.75659 0.88526 0.89031 0.93395 0.87275 0.84272 0.83540 0.84250 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 71.98 0.71 -1.29 16 2 C -0.12 -2.07 5.23 30.59 0.16 -1.91 16 3 C -0.10 -2.07 4.24 30.60 0.13 -1.94 16 4 C 0.18 4.89 0.62 3.61 0.00 4.90 16 5 C -0.16 -4.94 8.05 71.98 0.58 -4.36 16 6 C 0.07 1.85 5.38 71.98 0.39 2.24 16 7 O -0.57 -14.29 12.85 -148.98 -1.91 -16.20 16 8 N -0.72 -21.50 4.97 -422.93 -2.10 -23.60 16 9 C 0.51 20.39 7.00 87.66 0.61 21.01 16 10 O -0.55 -27.10 11.21 -3.02 -0.03 -27.14 16 11 C -0.11 -4.32 4.94 29.85 0.15 -4.17 16 12 C 0.06 2.79 1.28 -12.29 -0.02 2.77 16 13 H 0.03 1.53 4.78 -2.38 -0.01 1.52 16 14 C -0.46 -26.19 6.94 25.60 0.18 -26.02 16 15 H 0.03 2.13 8.06 -2.91 -0.02 2.10 16 16 C 0.03 1.64 5.47 84.65 0.46 2.10 16 17 N -0.95 -62.52 13.96 21.45 0.30 -62.22 16 18 Si 0.92 48.86 27.04 68.60 1.85 50.72 16 19 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 20 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 21 H -0.23 -11.22 5.15 99.48 0.51 -10.71 16 22 C -0.06 -2.64 4.77 -19.87 -0.09 -2.74 16 23 C -0.12 -4.60 8.87 22.27 0.20 -4.40 16 24 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 25 C -0.14 -4.03 10.05 22.27 0.22 -3.80 16 26 C -0.12 -3.89 10.05 22.27 0.22 -3.66 16 27 C -0.15 -5.90 9.13 22.27 0.20 -5.70 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 1.12 6.43 -2.39 -0.02 1.11 16 32 H 0.06 1.09 6.43 -2.38 -0.02 1.07 16 33 H 0.08 1.52 7.68 -2.39 -0.02 1.50 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.67 6.17 -2.39 -0.01 1.66 16 36 H 0.08 2.07 6.43 -2.39 -0.02 2.05 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 1.57 6.43 -2.39 -0.02 1.55 16 39 H 0.03 1.14 6.17 -2.39 -0.01 1.13 16 40 H 0.39 6.71 9.12 -74.06 -0.68 6.04 16 41 H 0.41 9.66 8.47 -92.71 -0.79 8.88 16 42 H 0.10 3.06 8.14 -2.38 -0.02 3.04 16 43 H 0.09 3.26 7.80 -2.39 -0.02 3.24 16 44 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 45 H 0.11 4.30 7.77 -2.91 -0.02 4.27 16 46 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 47 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 48 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 49 H 0.11 4.09 6.96 -2.91 -0.02 4.07 16 Total: -1.00 -77.77 381.37 1.74 -76.03 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: -0.70 Total: 33.12 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 4.34 Total: -30.70 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -1.80 Total: -85.82 kcal Atomic # 8 Polarization: -41.39 SS G_CDS: -1.95 Total: -43.34 kcal Atomic # 14 Polarization: 48.86 SS G_CDS: 1.85 Total: 50.72 kcal Total: -77.77 1.74 -76.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356669883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.530 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds