Wall clock time and date at job start Tue Mar 31 2020 12:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47212 * 2 1 4 4 C 1.53001 * 109.46861 * 119.99471 * 2 1 3 5 5 C 1.52994 * 109.47265 * 239.99481 * 2 1 3 6 6 H 1.08991 * 109.47106 * 294.25690 * 5 2 1 7 7 C 1.52999 * 109.47071 * 54.25907 * 5 2 1 8 8 O 1.42899 * 109.47020 * 58.35596 * 7 5 2 9 9 N 1.46504 * 109.47058 * 174.25818 * 5 2 1 10 10 C 1.34774 * 120.00047 * 155.00316 * 9 5 2 11 11 O 1.21277 * 119.99832 * 359.97438 * 10 9 5 12 12 C 1.50697 * 120.00013 * 179.97438 * 10 9 5 13 13 C 1.53009 * 109.47221 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46854 * 306.02654 * 13 12 10 15 15 C 1.50700 * 109.46667 * 66.02263 * 13 12 10 16 16 H 1.08002 * 120.00240 * 35.41102 * 15 13 12 17 17 C 1.37880 * 120.00098 * 215.40946 * 15 13 12 18 18 N 1.31511 * 120.00504 * 186.03542 * 17 15 13 19 19 Si 1.86803 * 119.99598 * 6.03994 * 17 15 13 20 20 H 1.48504 * 109.47083 * 94.47286 * 19 17 15 21 21 H 1.48501 * 109.46987 * 214.47426 * 19 17 15 22 22 H 1.48497 * 109.47305 * 334.47357 * 19 17 15 23 23 C 1.50695 * 109.47214 * 186.02160 * 13 12 10 24 24 C 1.38237 * 119.99895 * 302.94614 * 23 13 12 25 25 C 1.38239 * 120.00031 * 179.78568 * 24 23 13 26 26 C 1.38237 * 119.99442 * 0.45230 * 25 24 23 27 27 C 1.38234 * 120.00377 * 359.80243 * 26 25 24 28 28 C 1.38232 * 120.00122 * 123.22818 * 23 13 12 29 29 H 1.08995 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46895 * 60.00298 * 1 2 3 31 31 H 1.09003 * 109.47395 * 300.00405 * 1 2 3 32 32 H 1.09001 * 109.47633 * 70.59624 * 3 2 1 33 33 H 1.09005 * 109.46923 * 190.59490 * 3 2 1 34 34 H 1.09004 * 109.46841 * 310.59294 * 3 2 1 35 35 H 1.09005 * 109.46983 * 60.00155 * 4 2 1 36 36 H 1.09006 * 109.47089 * 180.02562 * 4 2 1 37 37 H 1.08995 * 109.47403 * 300.00000 * 4 2 1 38 38 H 1.09006 * 109.47448 * 178.35439 * 7 5 2 39 39 H 1.08999 * 109.47030 * 298.35654 * 7 5 2 40 40 H 0.96709 * 113.99692 * 180.02562 * 8 7 5 41 41 H 0.97002 * 120.00115 * 334.99502 * 9 5 2 42 42 H 1.08996 * 109.47830 * 299.99936 * 12 10 9 43 43 H 1.09002 * 109.47305 * 60.00378 * 12 10 9 44 44 H 0.96997 * 120.00021 * 179.97438 * 18 17 15 45 45 H 1.08001 * 120.00175 * 0.02562 * 24 23 13 46 46 H 1.07997 * 120.00257 * 180.27972 * 25 24 23 47 47 H 1.08000 * 119.99569 * 179.83167 * 26 25 24 48 48 H 1.07996 * 119.99894 * 180.02562 * 27 26 25 49 49 H 1.07995 * 120.00034 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.7631 -1.7743 -1.1991 7 6 1.4156 -0.0883 -2.4942 8 8 1.7470 1.3010 -2.5394 9 7 3.4985 -0.6028 -1.3202 10 6 4.2176 -1.5243 -1.9911 11 8 3.6573 -2.4518 -2.5357 12 6 5.7178 -1.4020 -2.0647 13 6 6.2852 -2.5674 -2.8777 14 1 5.9318 -3.5093 -2.4580 15 6 5.8270 -2.4517 -4.3086 16 1 5.7201 -1.4785 -4.7645 17 6 5.5441 -3.5884 -5.0360 18 7 5.2595 -3.4959 -6.3166 19 14 5.5650 -5.2600 -4.2023 20 1 4.1902 -5.6124 -3.7652 21 1 6.0583 -6.2837 -5.1582 22 1 6.4631 -5.2126 -3.0207 23 6 7.7909 -2.5287 -2.8277 24 6 8.4677 -1.4003 -3.2513 25 6 9.8487 -1.3630 -3.2013 26 6 10.5531 -2.4579 -2.7365 27 6 9.8765 -3.5883 -2.3178 28 6 8.4954 -3.6238 -2.3637 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8393 1.8989 0.9693 33 1 3.1135 1.4483 -0.1890 34 1 1.5306 2.0079 -0.7804 35 1 1.6765 -1.7489 1.2494 36 1 3.1300 -0.7208 1.2496 37 1 1.6766 -0.2073 2.1392 38 1 1.8013 -0.5830 -3.3857 39 1 0.3323 -0.2024 -2.4554 40 1 1.3830 1.7675 -3.3044 41 1 3.9466 0.1390 -0.8844 42 1 5.9825 -0.4603 -2.5455 43 1 6.1341 -1.4254 -1.0576 44 1 5.0608 -4.2956 -6.8283 45 1 7.9174 -0.5462 -3.6177 46 1 10.3773 -0.4798 -3.5280 47 1 11.6321 -2.4298 -2.6999 48 1 10.4269 -4.4434 -1.9543 49 1 7.9668 -4.5069 -2.0367 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356787263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:04 Heat of formation + Delta-G solvation = -70.413399 kcal Electronic energy + Delta-G solvation = -28068.500068 eV Core-core repulsion = 24381.215515 eV Total energy + Delta-G solvation = -3687.284553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.86315 -38.66440 -37.65274 -35.65547 -34.09403 -33.00531 -31.64080 -30.19393 -29.40453 -28.44749 -27.21680 -27.09611 -25.63275 -23.09316 -22.35541 -21.82972 -20.12630 -19.26741 -18.64459 -17.30187 -16.93893 -16.60738 -16.17550 -15.68478 -14.93207 -14.68575 -14.52173 -14.28511 -13.91861 -13.80985 -13.57512 -13.20302 -13.05436 -12.77075 -12.65407 -12.51689 -12.43220 -12.26969 -12.11915 -11.92805 -11.79245 -11.64703 -11.55332 -11.02250 -10.80590 -10.74940 -10.62086 -10.54119 -10.43093 -10.31470 -9.83067 -9.65597 -9.48430 -9.14955 -8.86250 -8.49131 -8.35368 -8.18791 -7.77204 -5.96667 -3.92511 2.12554 2.18340 3.42777 3.48203 3.52138 3.53516 3.71653 4.42071 4.55219 4.60444 4.62502 4.83295 4.94766 5.31923 5.35560 5.39708 5.51695 5.54747 5.56924 5.57825 5.59141 5.71084 5.72274 5.75050 5.84055 5.92818 5.97261 5.98156 5.98508 6.06052 6.13070 6.20238 6.20793 6.26488 6.34709 6.37096 6.57458 6.65382 6.74584 6.86873 7.01322 7.07241 7.17190 7.30605 7.62121 7.71642 7.74969 7.84852 8.14854 8.55548 9.03001 9.08521 9.68921 11.16250 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.004133 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.396478 B = 6772.619686 C = 7631.459220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.142 4.142 5 C 0.162 3.838 6 H 0.094 0.906 7 C 0.059 3.941 8 O -0.559 6.559 9 N -0.733 5.733 10 C 0.515 3.485 11 O -0.508 6.508 12 C -0.118 4.118 13 C 0.053 3.947 14 H 0.053 0.947 15 C -0.483 4.483 16 H 0.070 0.930 17 C 0.084 3.916 18 N -0.900 5.900 19 Si 0.876 3.124 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.258 1.258 23 C -0.034 4.034 24 C -0.108 4.108 25 C -0.126 4.126 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.139 4.139 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.049 0.951 40 H 0.368 0.632 41 H 0.395 0.605 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.261 0.739 45 H 0.117 0.883 46 H 0.109 0.891 47 H 0.107 0.893 48 H 0.108 0.892 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.100 8.867 13.498 16.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.199 4.199 5 C 0.056 3.944 6 H 0.112 0.888 7 C -0.019 4.019 8 O -0.364 6.364 9 N -0.389 5.389 10 C 0.302 3.698 11 O -0.381 6.381 12 C -0.159 4.159 13 C 0.034 3.966 14 H 0.071 0.929 15 C -0.520 4.520 16 H 0.088 0.912 17 C -0.118 4.118 18 N -0.537 5.537 19 Si 0.704 3.296 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.183 1.183 23 C -0.035 4.035 24 C -0.126 4.126 25 C -0.144 4.144 26 C -0.170 4.170 27 C -0.143 4.143 28 C -0.157 4.157 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.215 0.785 41 H 0.230 0.770 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.135 0.865 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -4.244 7.888 13.466 16.173 hybrid contribution -0.075 -0.544 -0.240 0.599 sum -4.318 7.344 13.226 15.733 Atomic orbital electron populations 1.21908 0.94261 1.01693 1.01948 1.20722 0.95748 0.96451 0.94230 1.22030 1.01311 0.94987 1.01387 1.21890 1.01449 1.00028 0.96549 1.20892 0.81441 0.99491 0.92570 0.88842 1.22713 0.97813 0.82186 0.99236 1.86580 1.79164 1.21530 1.49119 1.46199 1.06058 1.29468 1.57152 1.20820 0.90185 0.81555 0.77242 1.90713 1.72366 1.32458 1.42555 1.21681 0.91085 1.02667 1.00430 1.18198 0.86607 0.94593 0.97221 0.92928 1.20580 1.43551 0.94592 0.93284 0.91212 1.24895 0.93739 0.98863 0.94297 1.69905 1.47811 1.29202 1.06831 0.86900 0.78778 0.84236 0.79664 1.20272 1.22320 1.18272 1.20728 0.98371 0.92326 0.92051 1.20937 0.93382 0.98777 0.99479 1.21032 0.94601 0.98066 1.00689 1.20847 0.98712 0.94459 1.02948 1.20971 0.94505 0.97671 1.01124 1.21198 0.93840 0.98856 1.01780 0.92755 0.92095 0.92597 0.93960 0.93075 0.89501 0.92791 0.92383 0.92818 0.92514 0.93330 0.78533 0.76962 0.89858 0.91545 0.92942 0.86504 0.87248 0.87465 0.87400 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 7.94 37.16 0.30 -1.02 16 2 C -0.07 -0.76 0.62 -154.51 -0.10 -0.85 16 3 C -0.14 -1.44 7.45 37.16 0.28 -1.16 16 4 C -0.14 -1.46 8.34 37.16 0.31 -1.15 16 5 C 0.16 2.22 1.78 -67.93 -0.12 2.10 16 6 H 0.09 1.46 7.58 -51.93 -0.39 1.07 16 7 C 0.06 0.79 6.26 37.16 0.23 1.03 16 8 O -0.56 -6.53 9.87 -35.23 -0.35 -6.88 16 9 N -0.73 -11.05 4.37 -53.81 -0.24 -11.28 16 10 C 0.52 10.08 7.55 -10.99 -0.08 10.00 16 11 O -0.51 -12.30 14.68 5.56 0.08 -12.22 16 12 C -0.12 -2.24 4.84 -27.88 -0.13 -2.38 16 13 C 0.05 1.22 1.28 -92.92 -0.12 1.11 16 14 H 0.05 1.29 4.51 -51.93 -0.23 1.06 16 15 C -0.48 -13.35 7.20 -34.44 -0.25 -13.60 16 16 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 17 C 0.08 2.48 5.47 -17.82 -0.10 2.38 16 18 N -0.90 -28.21 13.96 55.43 0.77 -27.43 16 19 Si 0.88 22.94 27.34 -169.99 -4.65 18.29 16 20 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.30 -7.77 7.11 56.52 0.40 -7.36 16 22 H -0.26 -6.21 4.33 56.52 0.24 -5.97 16 23 C -0.03 -0.72 4.77 -104.63 -0.50 -1.22 16 24 C -0.11 -2.11 8.92 -39.58 -0.35 -2.46 16 25 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 26 C -0.15 -2.51 10.05 -39.58 -0.40 -2.90 16 27 C -0.12 -2.19 10.05 -39.58 -0.40 -2.58 16 28 C -0.14 -2.79 9.33 -39.59 -0.37 -3.16 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.56 6.37 -51.93 -0.33 0.23 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.39 8.11 -51.93 -0.42 -0.03 16 33 H 0.05 0.55 5.90 -51.93 -0.31 0.24 16 34 H 0.09 0.93 5.61 -51.93 -0.29 0.64 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.63 7.78 -51.93 -0.40 0.22 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.05 0.55 6.44 -51.93 -0.33 0.22 16 40 H 0.37 3.05 9.12 45.56 0.42 3.47 16 41 H 0.39 5.12 6.40 -40.82 -0.26 4.86 16 42 H 0.08 1.50 7.45 -51.93 -0.39 1.12 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 45 H 0.12 2.23 7.49 -52.49 -0.39 1.83 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 48 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 49 H 0.11 2.28 6.37 -52.49 -0.33 1.95 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -33.71 379.16 -8.05 -41.76 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -7.20 Total: 10.49 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.20 Total: -18.44 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.54 Total: -38.72 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.27 Total: -19.10 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.65 Total: 18.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.71 -8.05 -41.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356787263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.651 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds